Array 1 570-68 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCML01000109.1 Streptomyces acidiscabies strain a2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 569 29 100.0 32 ............................. TGCGGTTCCAGAAGGTCTACTACCAGGCCCTC 508 29 100.0 32 ............................. CGCTCCTTCTCGTCCGGGATCGACGCGAGGAT 447 29 100.0 32 ............................. CGTCTTGGTCGGGGCCGTCTGCTGTCCGCGTC 386 29 100.0 32 ............................. GTCCACCCCGATGAGCACTGCGGCCTCTACCA 325 29 96.6 32 ...........A................. GCTCACAGGGTGGCCTTGCTGACGGAAGGCGC 264 29 89.7 32 ...........A..G....C......... AAGGCCGCAGTCGTCGCTGAAGGTGGCGACAA 203 29 100.0 32 ............................. GTGGCGGTCGTGACCGCCCCTGTCCTCGCCCT 142 29 86.2 17 ..AA.................A..T.... GGAGCCTGGCTTCAGCA Deletion [97] 96 29 75.9 0 ...........C..C.....AA.ACC... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 94.3 30 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACGCCTCTCGCGTCACGGGGTCCTGAGCCGTCGAGCGACCCGGCCCAGGACCCCGCCCCCGAGCAGGACCGCGCGGCGGACGCGGAACTCGCGCGCCGGCTTGGTGGTGCGGGGTGAACTCTGGTGTGTACGGGGCTGAGGTTCACGTGGGGGTGCAACCGTCCAACTGACGGCAGGGGATGGGCGGGGGCCGAGGGTCTGGGCCTCGTGCGGGGTTCGTCGCCGGTACGGGGATGGCATCCACGCGAAAGCGGCCACCGGGGGTTCGTGGGGCACGCGGGGTCAGGGGCCGGAGCACGAGTCTGGGAGCGTACGGTTCGGGACGCGTTGGGGGCGTCTCGGGGTAGGGGTTGTGCGGTATCGCGTCCGCGCGAGGTTCTGGCGGTGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGATAAATGTCCGCTTCTCTGGAAGTGACGGATTCCGGGCTGCCGGCGGAGTAAAGCATCAGGTCGGGGTCT # Right flank : CTACCCCGCCAACCCCACCGCATACCCGGATCCTGTTCCCGCGGCCCGGGTACTGCACCGCCCACACC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3463-3206 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCML01000109.1 Streptomyces acidiscabies strain a2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================ ================== 3462 29 100.0 32 ............................. AGGTCCAGCTGCCACCCGCCGTTCATCCGGGC 3401 29 100.0 32 ............................. GAGCCGGCGACCTACACCCCGCCGCCGTTCCC 3340 29 93.1 76 ..........................AT. CGCCTCGCTTCCAGTTGTCCGAGGTCCGGTTGGCGGAGGAGTTCGGGGTGAACCGGGACACCGTGCGGAACGCGAC A [3316] 3234 29 62.1 0 .C....GTT...G.A.AA.......AT.A | ========== ====== ====== ====== ============================= ============================================================================ ================== 4 29 88.8 47 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGTGTTGGCCAGTGGGGTAGATCGAGCCGTGCGCTGCTGTCTTCGTAAGCGACGGGCTGCGCCGCACCCCCGGCACCCCGCTTCCCGCCGTACGCGACTCACCCGCCATGCCGGTGCGGCGGGGCGAGCCCGCCGATTGCGGCTCTCCCGCCGTACAGGTCAGGCGGGGACGGGCTCTCCGTTCGCGACTCTCCCGCCGTGCGGGGGGGCGCCGATACGGGGATGGCATCCGCACGAAAGTGGCCACCGAGGGTCGTGCGGCACGCGGGGTCAGGGGGGCGGCACCGTGTCGGAACACGACTCTGGGGACGTACGGTTCGGTACGCGTTGGGGGCGTCTCGGGGTTGAGGTTGTTCGATATCGCGTCCGCGCGGGGTTCTGGCGATGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGAGAAATATCCGTTTCTCTGGAAGTAACGGATTCCGGGCTGACGGCGGAGTAAAGCACCAGGTCGGGGTCT # Right flank : CGACGACTCCGGCGTTGGGGTCGTTCGTGGCGGATGAGCGGCCGAGGGGCTGAGCTTGGGGTGGGTTGCCCCGTCCGTATGCCGTGGGGGCGGCGTACGGACGGGGCGGGGAGGGCACGGTGAGCTGCTGTCCGCCGTGCCGTGGATTCAGGGAGGCGGCGGGCCGTTCGAGGCGATCCCCCAGACCAGCGCCGACGCCATCGACAGCAGGACCGTGACGTAGGCGATCGTGCGCCAGCGGTCGTTCACGGGGTCGCCCTCGGGATCAGCTCCTCGTAGTGCTCGCACAGGGCGTTCAGGGAGTGGGCCAGGCGCAGGGCCCTGCGGTACTCGCCCTGCGGGTGCGGACCGGTGCCGAGCTTCTGGCGGGCCTCACCGATACAGGCCAGGCAGCAGTAACGCAGGACGCTGTCCTTGCCGAGCTTCAGGGCGGCTGCCTCGACCTCCGGGAGGAGGAGGTGGAGGTGGCCGCGGAGGGTTTCGATCAGGGTGGGGAGGTC # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-1.39, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59063-58790 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCML01000046.1 Streptomyces acidiscabies strain a2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59062 29 100.0 32 ............................. GAAAAAAGCCAGGTCGGAAACCATTCCGCCGT 59001 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 58940 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 58879 29 100.0 32 ............................. ATCCCCTCTCGGCCCGCGAGAGGGGTCACGCT 58818 29 79.3 0 ............T........G...GGAG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGGTCCCCGCGCACGCGGGGATGTTCCC # Left flank : AAGGTGGAACGGCATCGTCTCGTACGTAGTCATGCCCCCACTTTGCCCCACGGATCATCACGAACTGCAGCTGGAGTACTGGCCTCGATTCTTCGGTGGGTTTGGTCGTTGAGTGGCCCGGCGGTTCGCCCGTAATTTCCCTCGCCGTGTGAGGGTGGGCCGTCGCGTGTCACTGCGGAGTGCGCCGGGTTCCACGGGCCCGGAGGAGCGTCTCTGCTGCCGGGGATGTTCGCGCCGGGCTACCAGAGATCGCGTCGAGGACACTCCACCTTCGGCAATCACCCTACGGAGCGGACGGGGCTGGCGCGGGTTGTCGGGTTGAGGTGGGGGCTCGGCGTGGATGTGGGGTGGGGCGCTGAGGGGTTCGACGGAGGTGGGTGGGTAGGGATGGCGGGGATACGGTTTGGGCCGGGGGTTCGGGGAGGGGCGACGAAATGTCCGGTTCCCGGGAAGCGATGAGAAACGGTGGCTCGCCTGGGTAAAGGGCCAGGTCATGGACT # Right flank : AGATTTCCCTGTTGGCCTGGAGCGTCCAATGCGGTCAGCGAAATTGAGGGAGGCGGCTGTCACGGTGATCGTGATGCGGTCTGTGGACGGTTAGGGCGAGGTTCAGTGGGCGGCATGCGGAGTCTTTAGGGAGACCCGATAATCAGGCCGACGTCGAATTCGCGGAATTAGCCTGTTCTGACCTCAAAGGGGAGACGTGAATCGAGCCACCAGCACCTTGCTGTCCTTCTCTGCCGCGCTGATCAGTATCGGGGTGACCGTCGCTCCGGCCAGTGCAGCCGATTCCTCGCGTATCGGTCCCGTGCATGTGTCCAGGGGCAGCGGCGAGGAGATCATCCTGTTCGACAAAGGTTCTGAGTTCAGGTCGGAATCCGGATCAGCCAGCGGTGAAGTCGGCTTCCGCGGTGGATCGTTCACATGGGTCGCCGATTTTCAGATCGGGTTCGAGTCCCGCCACTACACCGCAGTCGACGCAGGCACCCACCGGATTCAGATCAACG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12762-14658 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCML01000006.1 Streptomyces acidiscabies strain a2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================== ================== 12762 37 100.0 36 ..................................... CGGTGATGTACGACGCCTCGCACTTGCCGTACGACG 12835 37 100.0 36 ..................................... GGCTGCACCTCGGTCGGCGTGAACGCGGGCCAGCTC 12908 37 100.0 36 ..................................... AGCCCGTACTTGCGGATGTACGGCTTGTGGATCTCG 12981 37 100.0 37 ..................................... CCGTTGCCGGCCCACTGGTACGGCAGGCCGTTCTGGG 13055 37 100.0 35 ..................................... CCCCTCGCTCAGCACGTTAGACCCTAGGGTCTATG 13127 37 100.0 35 ..................................... GCGCTTGGGGTCGGTCGCGTGCCGCTCGTACTCGG 13199 37 100.0 36 ..................................... CCCAACCCCCCCACGTACGACCTCTACCCGAAGGAC 13272 37 100.0 35 ..................................... GGCAGACAGGGTGGTCACCCCAACTACCGCGCTGA 13344 37 100.0 37 ..................................... CGTACCGGGCGGGTGGCGTGGGGACCGAGGCCCGGCA 13418 37 100.0 36 ..................................... TACAACCAGGTCGTGGTCGAGACGGTGTGCGCGCGT 13491 37 100.0 36 ..................................... CGGTCCAGGTCGGTGTGTGCCGCTGGGGTGCGGCGG 13564 37 100.0 38 ..................................... CACAGCGACCGCAGCCCGTACCTGGCGCACTCGCGCTC 13639 37 100.0 35 ..................................... ATCTGTCTGTGCCGGCGCTCCGCCAGTACGACGTG 13711 37 100.0 37 ..................................... CACCGTGCGCCGCAGCCAGGCGAACCACGCCTCGGCG 13785 37 100.0 38 ..................................... ATGTCGGTCGGGGCGGCAGCCGACTTCCGGACGCCGGT 13860 37 100.0 38 ..................................... ACGGCCATCGGTAGCCTCCGCGTCGAGTACGGACCCGA 13935 37 97.3 36 ........T............................ AAAGCGGCCTGCGCGCGGGCGGGGTTGACGCTGACG C [13960] 14009 37 97.3 36 ...............T..................... GTCGCCGGGCCGTACGGCAGTCAGCGCGGCCCGGCG 14082 37 100.0 35 ..................................... GGGATGAGCGTGCGCGGCCAGTCCCTCCTCACCGT 14154 37 91.9 37 ...T............A...C................ ACCGGCACGATCGCTCACACCTTCTTGCCCCAGGGGT 14228 37 94.6 35 ........T.....T...................... GAGATGACCTACGAGGAGTGGATCGCTACCCAGGT 14300 36 89.2 36 ........T....-....A.C................ ATCCCCAGGAAGTTGCTGACCGTCGTGTACCGGACC 14372 37 91.9 66 ......C......C......C................ AACCGGAGCGTTGAACGGTTCTTCGGCAACGCCGCGTGGGCGGACCACTTGGGAGCCGAACGCCTG CC [14388] 14477 37 86.5 35 .....A....T...T.....C.....G.......... GCCGTCAACCGGACCGTGGCGACGGTGACCGGGAT 14549 37 86.5 36 ........T.T.....A..AC................ AGCGCGGTCCAGGCTACCGAGGCACAGCACGACCTG 14622 37 86.5 0 ..C.......T.T.......C.C.............. | ========== ====== ====== ====== ===================================== ================================================================== ================== 26 37 97.0 37 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : TCCTCCGCCACGGCGCTCCACCGCACGAAGCCCGTCCTGCCACGCACACGAGCCTTTTCCCACGTCATGGACCAAGGCCAGGTACTCGGCCAACTCCCCTACCCCGAACACCTCCCCGAACTTCCGAGCCAGAGCCGCTGAACCCCGCAGATGCGCTTCCAGCGAATGCTGCTGCCCCGACACGTCGCTACGGCTGTGCGCGATCAGCACACCCCCGGACCCACCCACAACAGTCCCTCCCGGAAGACGCAGGCCCTTTCGCCGAGCCTTGGTGGGCCGAAACGTACACACCCTCACTGACAACGCCCGCGAAGAAGCCCTCAGTTCCGGTTAGGCTCCTCACCTCGCCGTCGAATCACCGAACGCCATGCTTCGGAACCTCTAGTGCACACGCGACACGCGGAACGCACCTAAGGAAAATGTCCACTTTGTTGGTGTCTGCTTCGCCCTGGACTTGTTCCCACCTCCACTCGATACGATGAATGTGCTGGTCAGCCAGC # Right flank : CAATTTGGAACTGTGCGCCAACTTGTCCGGCGGTCACATGCCACAGTCGGCCTCTGAGCGATCGATCCACTGACGATGGGAAATAAGCGGCACCGGCGGCATATTCGTTGTCCGGAGGTGAGTGTCAGGCGGATTGTTTCTGCTCTTTTGAGGTTCTTGGTAGTGGCGATCGCCGCATATTTGCTGGTGATGTCGTGTTGCCCTGCGGGGTGGAGCGTTTGGCTAGATGCGTGCGCGGAGACGTGGTAGGTGCCGTGTTGGGGAACTGTCTCCCGTTGGGATGAGCGGAGCTGGCAGCAGGATTTCGAACCACGTCGTCTTTCCCGGCGGGTTCGTCTGAGTTCCCCAGATGTCGGCAAGTGCCTCTACGAGGAGGAGGCCACGGCCCCCTTCGTCGTCCGGCCCTGCTTCAGTGACGGTCGGCAACAAGGAGATCATGTCGGTGACTTCGACACGGAGACTCTTGCGAGTGCGTGTCACGGCGATGCCGCACGGGGCGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-55] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //