Array 1 466695-468066 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFT01000001.1 Salmonella enterica subsp. enterica serovar Ohio strain 07-0148 NODE_1_length_603155_cov_0.412527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 466695 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 466756 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 466817 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 466878 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 466939 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 467000 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 467061 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 467122 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 467183 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 467244 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 467305 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 467366 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 467427 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 467489 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 467550 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 467611 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 467672 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 467733 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 467794 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 467855 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 467916 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 467977 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 468038 28 93.1 0 ............T..........-..... | G [468055] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 484353-485847 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFT01000001.1 Salmonella enterica subsp. enterica serovar Ohio strain 07-0148 NODE_1_length_603155_cov_0.412527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 484353 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 484414 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 484475 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 484536 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 484597 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 484658 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 484719 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 484780 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 484841 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 484902 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 484963 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 485024 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 485086 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 485147 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 485208 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 485269 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 485330 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 485391 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 485452 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 485513 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 485574 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 485635 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 485696 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 485757 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 485818 29 96.6 0 ............T................ | A [485845] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //