Array 1 96368-94752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAADBY010000005.1 Escherichia coli strain 1804240018 NODE_5_length_228686_cov_20.0789, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96367 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 96306 29 100.0 32 ............................. TTGGCAACGCAACTAAAGACAAAAATGGCGAG 96245 29 100.0 32 ............................. GCGAGACGGTAACAGCGGATATTGTGCAGGCG 96184 29 100.0 32 ............................. TTACGCGCCTGGCTGGCGAACCGCTGGAACTG 96123 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 96061 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 96000 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 95939 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 95878 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 95817 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 95756 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 95695 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 95634 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95573 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 95512 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 95451 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 95390 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95329 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 95268 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 95207 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95146 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95085 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95024 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 94963 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 94902 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94841 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94780 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123197-122070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAADBY010000005.1 Escherichia coli strain 1804240018 NODE_5_length_228686_cov_20.0789, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123196 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 123135 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 123074 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 123013 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 122952 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 122891 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 122830 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 122769 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 122708 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 122647 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 122586 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 122525 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 122464 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 122403 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 122342 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 122281 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 122220 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 122159 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 122098 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //