Array 1 4410605-4413153 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011254.1 Serratia fonticola strain DSM 4576 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4410605 28 100.0 32 ............................ TCTATGGATTGTTGATTACTCGCCGTAAAGGC 4410665 28 100.0 32 ............................ TTACGCCATTGCCTAGGTGATATGCGTAAACT 4410725 28 100.0 32 ............................ TTGTTCACGCGTTGCCTTGATTGGAACGATTC 4410785 28 100.0 32 ............................ AGTTCAGCGGCTCGCTAACCTGCAGCGTGATC 4410845 28 100.0 32 ............................ TTGATGCTCATAGCCTGCGCCATCAGGTTCAT 4410905 28 100.0 32 ............................ GGCACCGCCTTGGTAGGGGTAGGTGCTGCTGC 4410965 28 100.0 32 ............................ AAGATCACCGCTGGATTCTTCCCGCTAGGTGA 4411025 28 100.0 32 ............................ CTTCTCGTTTGATAACGCCAGCACTCAGCGCG 4411085 28 100.0 32 ............................ AAAGAGCTATCAGAAGCGGAAACGTACATCTG 4411145 28 100.0 32 ............................ CGGCGAGCGTTGAGGCGATGACAGATGCAGTG 4411205 28 100.0 32 ............................ CGATGGCGCTCTGGTCTCCGGTAAAGCGCTTC 4411265 28 100.0 32 ............................ AGTACCCAGAACTTGCTATCGAGCCAGAGGGA 4411325 28 100.0 32 ............................ TGGTGGTGAATAATGGCAATGTGCGCACTAAC 4411385 28 100.0 32 ............................ TTCACTGGCTTGCCTGAATGCCTGAGCGATCT 4411445 28 100.0 32 ............................ TGCGCCGTTTCCGTCTTGCTTCGCATCGTGGC 4411505 28 100.0 32 ............................ TCTTCCTGCTTGAAATTTCTGCGTTTTCGTGC 4411565 28 100.0 32 ............................ ATCTACATGCGTAACTTTGCACTTCTTCACAG 4411625 28 100.0 32 ............................ CACTGGCGGCAGACCTTCACCAGACCAGTGCT 4411685 28 100.0 32 ............................ TGGGAGTGGTGGCAGAAGGGCCGGGAGAGTCT 4411745 28 100.0 32 ............................ TCGGCAACCCTATCAACCAGCAGGACGCGGCC 4411805 28 100.0 32 ............................ ACTGAAGTTAACGCTGGAAAGCCGCAAGACCA 4411865 28 100.0 32 ............................ TACCAGAACCTGGTATACCTTCCGTGCCTATG 4411925 28 100.0 32 ............................ TGAAAACCATGTAGCCCACATAGCCACATATG 4411985 28 100.0 32 ............................ AGTGGACACGGTTTCCGGCACCAGTTCAGCAC 4412045 28 100.0 33 ............................ CAAAGGGCAAGATCATCCACGGCCGCGCTCGCT 4412106 28 100.0 32 ............................ ACATTCCTTTGGCCGCTGAATGAACATCACTC 4412166 28 100.0 32 ............................ GCATCCGGACAAGCAGGGGTGGTTACTGGCAA 4412226 28 100.0 32 ............................ ACGACGGGTAATTGTGCAGCTTGGTTAAGGTC 4412286 28 100.0 32 ............................ AGGAGAATCATCCCCGCCAAGGTGTCTACCCC 4412346 28 100.0 32 ............................ TGAGAGTGACCAGCACCCGCTTTATCCTGAAT 4412406 28 100.0 32 ............................ AGAATACTGCAGGAAATCAGCGACAAGACCAA 4412466 28 100.0 32 ............................ TTGTGGACTCGGCCAGCGGAGAAAGCTTGTCA 4412526 28 100.0 32 ............................ AGTTGGCCACACAGTTTTTTGGTGGCAGCCGC 4412586 28 100.0 32 ............................ TGTATTGATGCGAGCATGATGCAATGCCCATC 4412646 28 100.0 32 ............................ AGGTAGCGCACCCCCACAATAACGCCACACAG 4412706 28 100.0 32 ............................ TCGGCAACCCTATCAACCAGCAGGACGCGGCC 4412766 28 100.0 32 ............................ GTTGGCATAACGGATCACGCACTGCTCTGCAT 4412826 28 100.0 32 ............................ CCGCCGGGGGAATTAACGTTGACCGTGACATC 4412886 28 100.0 32 ............................ TGGCGCCGCACTGCGAAAACTTGATGCCGTGC 4412946 28 100.0 32 ............................ TTAACCCCGCAATTGTGGCCACGGTAGACCAG 4413006 28 96.4 32 .........................G.. ATACGGAAGAATTTGAACATGTCATGCAGACG 4413066 28 100.0 32 ............................ ATGCCAACGCTGAAAGTCGGCACAAAGACACG 4413126 28 89.3 0 ...........C...........G...G | ========== ====== ====== ====== ============================ ================================= ================== 43 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGATAGCCAAGGCAACAGTGTGGGTTCTGTGGGGCAAGGTGGGCAAATGTATGCTCGCGTAGCGGAAGACAAAGGAGAACTGATTGTGAAATGGGGTGTCGGTAATGACATGCAATGTACTGTGGGATATATGCTGATGCCGCAGGCAAAAAACAGTCCCGTTTCAGCGATCCAGGTCTTCGATTCAGTTTGCCAATAGAGACAGCACACTTAGCTATCAATCTGACGGGAGCTATGGCTCCCATCTCCTTTTCCCTCACTGAAACTCTTCCGCACGGTGGTATGAAAAACGAGCTGCATTCATCCCTTGGTAGCTCTGTAATCATCCCGCCACCTGTACCTATCCCTGACACTCGTAGTGTCCCTCCAGACCCTATTTTTGAAGCTATTCATAACTCATTGATTTTAAATTAATGTTAGGGGTGGGTGAAAAAAAGGGTTTTCCGGAGGATCTTAAGGTTATTGTTTAAGTAACAGAGAATTAGCGCTAGGATGTAACA # Right flank : GGTTGGCGCACCGTCAACTTTCCACCCCAAGCTTGTTTTTATTGTTAAGGTAATTGATGTGAATGATTCATGCCATGTATCTATCTTTATGATTCATAATTAATAAAAATTAAATGAAAATCTAACACCAATCACTCTATCTAATGAGTGATTTATGCTAAAACAACAATATCGCGTTGGCATCTGTCATAGGTAATCACGTTCGGGATGATTTATGGCATAAAAACAGGGAAGTTTTCATTCCGTGCAAAATCAATTTTCGCCCTCTGATTTAAAAACCATTCTGCATTCAAAGCGTGCCAATCTCTACTACCTGCAGCATTGCCGGATCTTGGTCAACGGCGGCAGGGTGGAGTACGTTACGGATGAAGGTAAGCAATCCTTGTATTGGAACATCCCGATCGCTAATACCACAGCTGTAATGTTGGGGACGGGAACTTCTGTTACTCAAGCGGCAATGCGTGAGTTTGCTAAAGCCGGGGTGCTGGTTGGATTCTGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4421653-4422341 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011254.1 Serratia fonticola strain DSM 4576 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4421653 28 100.0 32 ............................ CTTAAAGCATACTCAACTAACGAGGATAATAT 4421713 28 100.0 33 ............................ AGGAATTTTACAGCGCGTTTTTTGTCGAATTCA 4421774 28 100.0 32 ............................ AGCGTTCTTCTTGTTCTTCTCGCAATAGGCCT 4421834 28 100.0 32 ............................ ATAAAGTGTTGCCGTAGCATCAAGGCTTCCCC 4421894 28 100.0 32 ............................ TTGGTCATCATCACAGTCTTTCCCACGACCAC 4421954 28 100.0 32 ............................ TGAATCAGGTCTGGGTATGAGCGAACCTGGCC 4422014 28 100.0 32 ............................ AGCGCTGCCAGCAGTGCGGTTACGTATTCTTG 4422074 28 100.0 32 ............................ CAAGGCGGCCATCAGATCATCTTCTGTTACGC 4422134 28 100.0 32 ............................ AGAGGTGGCGGATGACATTTGCGCACTGCTTG 4422194 28 96.4 32 .......A.................... AGCAACGTCTGATGTTCGCAGGTTCCCGTAGC 4422254 28 96.4 32 .............C.............. AATCACAACCCACTGAGAAAGAGGAACATATG 4422314 28 92.9 0 .......A.....C.............. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGTGCTCACGGCCTTTGAGGCTTTACCTTGGCGTAAAGGATTACGGGATTACACGGAATGTGGCGAAATTCTGCCAGTACCCGCCAATGTAAAATACCGTACAGTGCGACGAGTGCAGATCAAAAGCAGCGCCGAGAGATTACGTCGTCGTTCTGTTCGCAAAGGATGGGTAACTGAAGAAGAGGCTCGCCTGCGTATTCCTGACGCCGTTGAGAAACGCTCAGCGTTGCCATTTATTCGTTTAAAAAGTCTATCCAGCGAGCAAACCTTTTTGTTGTTTATCGAACAGGGCAAGATTTGCGATAACGCAACAGAGGGGGTATTTAGTGCTTATGGTCTAAGCGCAACGGCAACCATCCCGTGGTTTTAACCCTAATTTAATGGCTGATTCTAACCTATTGATTTTAAAAGTTGGAGTCAGTCATGTTTAGAAAAGGGTTTTTGGGTAAGGTGGTTGTATTCTATTGTATTAACAGTTAGTTACCGCTGGCATGTAACA # Right flank : ACCACCACATATTCGGTGAGTGGTTTCGCCACACGTAAATTGTTGCTGCCTGGCAGCTTACCGACTACGGCCATATAGCCGCATTATTGTGCCAACATATATCCAATCGCACATTCTGTGTTTAAATGTTCAAAGCCTGTGAGGGAGAAATGTGGTCAAGTATTTGTTCTACTCGTTGTTCTACGCCTCCGGTAACGTATAGGAAGGGAATATCACGTCTGGTCAATTCTTCGATATACCATTGCTGTTGTCGTTCACGGAATGACTCATCCTGGCGTGTGCCGTCCTGATGAAAGACGAAATCGTCAGCACAAAGTATAACGGTATCATAATGTCGACAGGCTAACTCCTCCAGCAAAGGGTCTGCTCTACCAAACATGGCCAGCGAGTAAAATAACGTTGTCAGCGGAGAAGTATCACAAACTAAATATTGATTTGGGCATGCAGTCATCTCCCATAAGGTCTGGGTTTGTGCAATATGCAGCATGTCTTCGAAAATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4424531-4425539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011254.1 Serratia fonticola strain DSM 4576 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================== ================== 4424531 28 100.0 32 ............................ AGTGCTGCGTCGGTGGCGGGGGTCAAAAGTGA 4424591 28 100.0 32 ............................ ACTAGGCAGGATGCTATTCAACGCCGGAAAAG 4424651 28 100.0 32 ............................ GTTGAATCCCCAGACAGTATTCAGTCCATTGC 4424711 28 100.0 32 ............................ TAAAGAGCTACCTGGGGACATAGATTATAACT 4424771 28 100.0 32 ............................ AAAGCCAGCGGGGCAGCACACACAGGGGGAGA 4424831 28 100.0 32 ............................ GTGCGCTCGTGCAACCGTTTCGGTAATGCCCC 4424891 28 100.0 32 ............................ CAGTAGTAAACGAATATATGCCGCTGCGACCG 4424951 28 100.0 32 ............................ GGTATTGCGTGACGAATCGGACTTCTATGAGG 4425011 28 100.0 32 ............................ ATATAAGGCCCACTGGATGGAATGATGAGGCA 4425071 28 100.0 81 ............................ GAGGCGTAGAGCCAGTTGCATCAAGAAGAAGGTACAGGCAGCTTAGAAACTTCCCGATGCCGTCACGCTTGAGCAACGTAA 4425180 28 100.0 32 ............................ AGATAGCTCAGCGTAAAGGGATAACGCTCGCG 4425240 28 100.0 32 ............................ TCGCGTAACGTTCTGTTTTCAGCATCGGCCTT 4425300 28 96.4 184 ......................C..... ACAAGGGATTTTAAATCCCTTTTGATTGGCGACAAAATGACTATATCGCTGGTTTTTTAACGGCACAAACTGTTCGAAACTCTAGTTAACCTATTGATAAAAAACGGGCGCAGCATGCAGCGCCCCTACGTGTGAGGCCGGTGAAGGTTTATCAGCTGTCTTTAAATCCCTTGTGTCTACCAAT 4425512 28 71.4 0 A....T...AA.G...C....AC..... | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================== ================== 14 28 97.7 48 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAGGCATTGATATTTATTCCTTTAAACACAACGAACTCACCAACGTAGCAAGTTGGCTACTGGATAGTCTTGGTCTCCCTGTAGGAGACGATAAAGCTGCAATATAAGGGAGTATTTGGCTAGCTAAGTCAATATTGGGGGACTGATTTGTGGGCTTTAGCCACTTCAAAAATAGCGCAGACTAAGGATCTGTCGCATAAGACGAGTGTTGCATGTTGAGGAGCGCAGCTATACAGGAAGGTTTGAAACCTCCAATGCGGCAGCATCGGGTAGGGTAGAAATACGACTAATCAGCGATTTTAGTGGACAGATAGACTCGTAATCATTTCACGAAGGGGTATCTACCTCTGGAGTGGGTTGTATCCTGCTTACCCTAATTTTTGAGCCATTTATAACTCATTGATTTTAAAAACCAGAAAAGGAACGGTGAAAAAAGGGTTTTCTGATAACTATCAGGGTTGTTGTTTAATTAACAGTGGATTAGCGATAAGATATAACA # Right flank : ATCAACTTCGGTTGTTATCGCGAAAGATCCTTTTTGCTACATTCAATGCAAACATTAAAAAGGAATTTAGACATGAAAAAACTTGCCTCAGTTTGTCTACTCAGCTTGTTGTTTGCCTCGGCCTGTAGCCCCCACAAAAGCTCCAATACCAAACCCATCGAGCTAAGGCCAACGGAAGTGGCACCGCTCGTTGATAAACCGCTCATGTACGCTCGTGAAGTTCGGGCAGCCATTCAAAGAAAGCTTTTTATCGAGGATGACTATCGCGGTAAAACCTGTGACATCAACATCAAGATGTCTAAAGACGGGAAGGTATATGACTTGCAGGGCAACGGCTATCCTCCGCTGTGTGAAGCTGCGATAAAAGCTATCAAAAATGCTGACATCCCCGCTCCATATGACGACGAAACCTACCAGCAATTCAAACAAACAGTGCTTAGCTTCCAACCTGTTTGAGCATCAGAGGCGGGGAGTCGATAGTCATGGGGGCTGCCTGGAAT # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-1.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //