Array 1 469464-471077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATLW010000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 388 NODE_3_length_729040_cov_71.7928, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 469464 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 469525 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 469586 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 469647 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 469708 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 469769 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 469830 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 469891 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 469952 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 470013 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 470074 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 470135 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 470196 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 470257 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 470318 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 470379 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 470440 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 470501 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 470562 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 470623 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 470684 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 470745 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 470806 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 470867 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 470928 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 470989 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 471050 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487337-488159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATLW010000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 388 NODE_3_length_729040_cov_71.7928, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 487337 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 487398 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 487459 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 487520 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 487581 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 487642 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 487703 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 487764 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 487825 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 487886 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 487947 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 488008 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 488069 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 488130 29 96.6 0 ............T................ | A [488157] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //