Array 1 25847-25039 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJSP01000020.1 Lelliottia amnigena strain 2017H1G6 NODE_20_length_96141_cov_36.795082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25846 28 100.0 32 ............................ TATTTTCGCGCCCAGTTGAAAGCCGGAATCAA 25786 28 100.0 32 ............................ AGAGAACTGACCCAGCGATGATTGATCTGTAC 25726 28 100.0 32 ............................ TCGAGCAGAGCGTCTTGATAGCGCAATCCACG 25666 28 100.0 32 ............................ ATACATTCTGTGACGATATGACCAAGGCCAGC 25606 28 100.0 32 ............................ GGACTCCAGCCGAGCCATTTCGGTCGCCCCTG 25546 28 100.0 33 ............................ GAACGTGAGATTCGTTATTACGAAATCACAAAA 25485 28 100.0 32 ............................ CGTCTGACTGATGACCAGATACGCCAGTTTAT 25425 28 100.0 32 ............................ TTTAGGCCAGTGGAAACGAAATACATTTCGCA 25365 28 100.0 32 ............................ GTTTTGTGAAATGATCTAGAATTGTTTGCGAA 25305 28 100.0 32 ............................ ACTACCACCGCCGCTGCTGGCGGATTCTGAAT 25245 28 100.0 32 ............................ AACGTGGATGTGCAAGATGACAATTGAGTTAT 25185 28 100.0 32 ............................ AATGTGGACGACGGCCCGGTTCAAGGCCGTGG 25125 28 92.9 32 .........................CG. CTCGAAGACATTGAAGGATATGGCAGAGCTCT 25065 27 75.0 0 ..........AG...A...A-.G.C... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACACGTTCGCTTTCATCAGGCGTAAGTGTTCTGCCCGCACTTTTTCGGCGGGCGACATTGCGCTCGTTGATGCCGGTGACGCGCAGAATGTCCGCCTTAGACATCTCGGTCCATTCATGAATATGATCAAGCACGCTGACGGGCAGACCCTGGTTGAGCATCTCAATCAGTCGAATACCGCGATTGGCTGGCAGACCTGCATATCGCCACAGCGCATTGTCAGCAGGTTGTTGTGCGGGCACCCATGATCTCATAACGCCTCCCGTTTATGACATATGTCATGCTTTATTATAGTCATTTGTCATCTCTGGGGGTAGCGATCTTACGCATGAATATCCTTATACGAAACATCATTTCCCTTCAGTCTCTAACCCTAATTTTTAGTTAAAATCCAGGTTATTGATTTATAAGGTAAATAATTAATAAGTAAAAAAAGAGTCATGAACGGTTAAAGATGCTTTTTTGTATAAAAAACAGCGCAGTGGGGTGATAATCTGTCA # Right flank : TCGCCAACATTGCGCATTTCGCACTGAGCTTAATTGCCCACGCGCGCTCATTCACTGCTGCTGCGATATAGGTATCAATAACATTCCAGAAATACAAAAAAATAAGGCCGGGGATATCCCGACCTTATTTATATCTGTACGCCTTCAGCGGCGAAATTAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATACGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCGGTGACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAACAAAACAGTTTCGGCGCATTGCCCAGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37688-35437 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJSP01000020.1 Lelliottia amnigena strain 2017H1G6 NODE_20_length_96141_cov_36.795082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37687 28 100.0 32 ............................ TTGTACAAACTGACCTGGAAGCAACGGGCCAC 37627 28 100.0 32 ............................ TTCAATTCAAAACAACGCGAGGAAACTAATGA 37567 28 100.0 32 ............................ CATCGGCAACACCCTCCACCAGCGCTTTCCAT 37507 28 100.0 32 ............................ CACCGCCGCTTCCCAAGTAAGCTGCTGCATCA 37447 28 100.0 32 ............................ ACTAGAAAATAGCGCAACGTTTATTTCTGATT 37387 28 100.0 32 ............................ AAAGACGGCGGCACCACTATCACCACTGACCC 37327 28 100.0 32 ............................ GATATGGTAATGCCAGAGATGATGAGCTATTG 37267 28 100.0 32 ............................ GTGATGAAGTGCTGAAGTTCGGTGATGATAGC 37207 28 100.0 32 ............................ CAAAACCATGAGCTTACTTATGGGAAGAGCGG 37147 28 100.0 32 ............................ TCGCCGCAATCATATCCATCAAGATTTCAGGG 37087 28 100.0 32 ............................ AACAAAAGTTCTAAGTTGGAATGAGATAAATC 37027 28 100.0 32 ............................ TCCTCCGGCGTTGCGGGCTCGCGTAGACCAGA 36967 28 100.0 32 ............................ GTCGAGCGCATGACGCTTGTGTTCAGCGGCAA 36907 28 100.0 32 ............................ TCATCTGCTGAGATTTCACCATCGGCGCGATC 36847 28 100.0 32 ............................ ACCGGCACCGACTCCCAGCAGATCACCGTCAC 36787 28 100.0 32 ............................ ATGAAAATCCCGTCCACCGGGAAGGTCAACGA 36727 28 100.0 33 ............................ CATGACAATTACCAGAGAATTCACCAAAGCGCA 36666 28 96.4 32 .......................G.... AATGACCCCACGCCAGAGACGAGCACACCAGA 36606 28 96.4 32 ...A........................ CGTAATTGGTTCTGCGCGGCTTAATCTAGCAG 36546 28 100.0 32 ............................ ATTTGAATACGGCGCAAAAGCTGTCTGTAAAT 36486 28 100.0 32 ............................ TGTCACTGATTACAATGAGGCATTGATTACGA 36426 28 100.0 32 ............................ GGCAACGGCCTTGCTTGCGGGTCTTGATAAAT 36366 28 100.0 32 ............................ GTGCTGGCGTACTGTTTGATTGCCTGCGTTTT 36306 28 100.0 32 ............................ TGAACCGGGTGACGTCGTTATTTTCGATTACG 36246 28 100.0 32 ............................ CAGCCCTGCAGCTGACTATGTCGAGTCCGACC 36186 28 100.0 33 ............................ GGAACAGTAACAAGTGGAATCTCCAACACGACA 36125 28 96.4 32 ............G............... AGCCCGGTATCAGAGACGATAACAACTTTGTC 36065 28 92.9 32 ............G..A............ ATGCGCTTGGTGCTCAGTTCTTTATCGCTGTT 36005 28 100.0 33 ............................ GCGGAATGAATATGGGTTCAGCTCAGATTCACT 35944 28 100.0 32 ............................ TTTATCGGGCGAGGCTGGCGCACCTGCAAACG 35884 28 100.0 32 ............................ ATTAGGCACGCTTGAAATATCACGCATAAACG 35824 28 96.4 32 ............G............... GGGCTGTCGTCGCCGAACTGAGCTCGGGCGAT 35764 28 96.4 32 ............G............... GTTAACGAACGAGACCGGCAGCGCGACCAGCT 35704 28 96.4 32 ............G............... GTGCTCGGCAACAATCCCGACTAAATCGACGA 35644 28 96.4 32 ............G............... AGTTTGAGCCGTCTCCTTCTTTCTTGTAAGAA 35584 28 92.9 32 ............G.............G. TGTTAAAGCACCCACAGCAAAACCAATAGAAT 35524 28 96.4 32 ............G............... ACACCAAAATAACCACTAATCTGCATCGCAGA 35464 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGCTCGACTGCCATTCTCTTTCGCAAATGCAACCTGTAAGTCGATGCCTTACTGCTTATCTGGACACCCTTCAACGCGAGTTGGCAAAATCGATGACTGATTTTTACGTGGTCGAAAGCGCCGATAACCAGCCTCTGAAGCGAAAAGAGTGGCTTTTAGAAGATACCGAAACGCTTTGTGATTACAGCCGCGCGTTAAATCACGTTCTGCAGATTTCACACGTTGATGGCGAGATGCGCCCTCATCTTACCGGCCTGCTGCACGACATCACGCACGCGATTGCTGACGATCTCAATGGTTCTCAGATCCAGGTCACTAACCGTTCCCTCTAACCGAACCGTGCCGGGATAGTTCCCGGCACAATCCAAAACCCTTTTTTCAGATGATTTTTAACGTATTGATTTTATTACGCGTAAATAACCACTCAGAAAAAAGGGTAGAAATGGCTGAATGTTGATTATTTTGCGTCGCAACAATAAGATAGCGCCGTAGCACTTCA # Right flank : TCTGCGTCTTAATGGGGACATTATGACCCCACGTTAACTGCCGCTCAGGCAGCCACCCGTCGTCAAATAAACACTCAACCAGTCACTGACGCATTCTCCAGCACATCACTCTCAACGATGTCTCTTCTCGCGGAAATATCGCGACATCAGAATGAATAACACCTCCTCATGGTTAAATAATACAAATAAATAATCTTAAAGAACGCACATAATTAAATTTATTGCTCTTGTGAATAATGTCTGAAAATAAACGGGAGTTTAATCGTGTATTAGTCCTATTTATTTTGCGGTTTGATATTCATCACATTTAATGTGGCCGACTGTCTACTAACATACTTGACTAAATATCGCTGTTGAAAAAGGTTTTTTAATGCCTGCTAATTTTGTCATGCCTTCCGATCTTAAAACGATTCTGCATTCGAAACGGGCCAATATTTATTATCTCGAAAAATGCCGTGTACAGGTTAATGGCGGCCGGGTGGAATATATCACCCAGGAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 57949-57139 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJSP01000020.1 Lelliottia amnigena strain 2017H1G6 NODE_20_length_96141_cov_36.795082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57948 28 100.0 32 ............................ GTGAACCGAAAGCTGATGTTATCAACGGTACT 57888 28 100.0 32 ............................ AGGTCGTGCCATCGCGCTGATAAATTATGATA 57828 28 96.4 32 .............G.............. GTATACAGCAGCTTCAACACAACGACGAGCGC 57768 28 100.0 32 ............................ TGACCCAGTGCGATTTGCAATGCGGTATTGTT 57708 28 100.0 32 ............................ ATCCATAACGTTCACAGAATCCGGAGAAAGTT 57648 28 100.0 33 ............................ TATCCGCTGGGTCAGGGTAAGGGGTATTGGCAT 57587 28 100.0 32 ............................ TCAATCAGTCGCACAACGTCGGCGGGATAGGT 57527 28 100.0 32 ............................ TATATTCCCGCGCGGTAAACGCATCCCCCTTC 57467 28 100.0 33 ............................ TCAGAGAGTTTCGCCAACTGGTCGAGGTCGTAG 57406 28 100.0 32 ............................ GCAACGGCCAGACGACCAGCCTCCGGTTTAAA 57346 28 96.4 32 ................T........... TCACTTCGAACCCGCTTCTGCAGAGCAGGCTC 57286 28 96.4 32 ............T............... GCTTCGAGCGATGCCAGCGCGATACTCAACAG 57226 28 96.4 32 ..............G............. CTGGTGAGTTCTTTCGCGGCAAAGGGCAAAGG 57166 28 67.9 0 ............G.......GAATACCC | ========== ====== ====== ====== ============================ ================================= ================== 14 28 96.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCATTAGCGGCATGCTGGTGGCAAAAGGATTACCAGGGTTTATCGCGTATGGTGTGTTGATTGGCGAAGTGGTTGCGCCTGTGCTGATTGTGCTGGGCATTCTGACGCGTCCGGCAGCGCTGGTGCTGGCCTTCACGATGATTGTCGCCTGGCTGATGGTCGGCACCGGCAAAACGTTCGCGCTGGACGCAGTAGGCGCATGGGCGATCGAAAGTCTGGTGTATTTCTTTATCGGCGCGTTAGCCGTGGCGTTTTTAGGTGCTGGGCGTTATGCCTTAGCCAAAGACCCGGCCTGGAAGTAAGATTTTCTCCGGGCGGCGCGAGCTTATGTCGAGATAAAAACCAGCATCTGCAAAAAGGGTTCTTCGGAACCCTTTTTTGTGGGTTCTGTTTAACTCATTGATATTGTTGAGTGGAATGAGTATCCAGGAAAAAAGGGTTTGGCGCGCTGGAGTCGAATTTAACTTTAAGTATCAAAAGCAAAGGTGTAGATTGCTTCA # Right flank : GCCGAGGCGGGTATTTAGTATTTCAAATTAAAGGGCTACAGTGTAATCAAGGTTGCCGATCTGACTTTCCATTTTCCATCCTCGCGAACAAGGCAATCCGCGATGACATGTTTTTTGTTCTTACCAAATGCAATGTAGATATTCATGCACACCGCATCAAAATCAGAAGAGATTACACTCACGTGATCCCAGTCCTCCTCCCAATCCTGGGCTTTGATAAACATATCTGAATCTGGCATATCTTTATCATTGCTGTCGCCCGAATAGAGAGCTTTTATCGCTTCGATGGATTTTTTTGACACGTAAGGGGTAAGAGTGTCGGGCTTAAGAAGCGGGGATTTATCCTGCTTGAGGGCGTCTACATACCAGCGATTAAAATTCAATGCGGCAATTTGTGGCGTTACCGCAAGTGGGCTGGCATAAATCGGCGGGCATAATGATAAAAGGAAAAACATCCAGGCTTTCATATTTTAACGCCTGTATATTTCAAAAGATGGACG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //