Array 1 64618-65109 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAE01000045.1 Clostridium botulinum strain P551 Cbot_75_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 64618 30 93.3 36 ................AT............ GTGGCAACTCTTCCTCAATATTTGTTTTTGCTTCGA 64684 30 93.3 36 ................AT............ TGTTGATTGATTTAGCGGACGAGTTGGGGGACGATA 64750 30 100.0 36 .............................. AAATCTTACCTATATCTTCTTGTTTAAGTCCTTTAT 64816 30 100.0 36 .............................. GTAATAGTTATTCCTGTAATACTAACTCTTTCCGAT 64882 30 100.0 36 .............................. AGTTTTTTCCTTATTAGAGAGTAATAAGTTTTTATA 64948 30 100.0 36 .............................. ACAAATTCAACAATATCAGTACCCACTATTGAACAT 65014 30 100.0 36 .............................. TCAAACACTTGGAGTTTTTACAGATACTATAATAAT 65080 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 98.3 36 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : AGACAGTGCAGAAGAGATATTTAATAAAGTTAATGATTATATTTTAGACGGAATGCCATGCGATAGAGTAAATGAAATTATAAATAGCAATGAAAATTGTGTGAAATGGACTAGAAGAATTTGTGTACATAAAGAAATTTGGGATAAAGAAAGTGGAGATGTAGAGTACTTTTATTTCCTAAGGAGTTTATGGATTAAAGCTTTTGTAAATGAAATAAATACTGAATTTGATTATTTAGAAGACAGTAAAGGGGTAAAATCTATAAGAAGAAAATAAAGATTTTTATAAAAATATACATTTGTAATTTAAGACAAGCTTTATTATTTTACCAGGCAATTATTTTAATGAAATCCTATTAAACCTAGATAAATACAAGGATTATATATAATAGAATAGGTTGTTATCAATATTATAAAATCACTTGGTAAAATAGTAATAATATGTTACTATTACTGTATTAGAGCGATTTTATTATTTTAAGAATGGCTTATTTTCAATG # Right flank : TTCATAATATACTGGTGTTGTTATGAAGAATAAGCCTAACCTAAATTTTAGATTGGGCTAAATATTACTAAATAGAATAAAACATTAATTAAAAATATTTTTATCAAACATTTCTATAAAATTACATGAAATATTTGATAGAGGTTTATTTTTAGGCCATATTAATCTTAGATATGACTCAATTGATGGTTCTATTATCTTTTTTATCTTTAAATTAACATTGGGTAAGATATTAGAAGCAGTAAGTGGTAAAATAGAAATTCCAATTCCAGCTTCAGCCCAACTTAAAGAGGTAATAATATCATCATTCTTACATATTATATGTGGTTCAAAGCCTGCCTTATTACAAGCATTTTTTATAACATCATCGTATCTTCTATTAATTATTAATGGCTTATCTTTTAATTCGTTAATGAGAATAGTGTTACTTTCTATAGAATTATAGAATTTAGATTTTGCAATTGTAACAAAATAGTCATTTAAATTATTTTCAAGGTTAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : GATTAACATTAACATGATATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 31424-30147 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQAE01000111.1 Clostridium botulinum strain P551 Cbot_75_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31423 30 100.0 36 .............................. TTCAGTAAGCTATGTAGATGGAATTTCAACTATGAG 31357 30 100.0 36 .............................. AATCTAGTTACTACGTTATGTCTTGCTTCGTTATAT 31291 30 100.0 36 .............................. AATACAAGATAATCAAGACATGAGCCTTACAGCATA 31225 30 100.0 36 .............................. AGTATATGGGGATAAGGGGGAATATGAGTGTATATA 31159 30 100.0 34 .............................. GGACTTGTAGTTTCATTTCCATCAGAATCATATG 31095 30 100.0 37 .............................. AAGTATAGAAGAAACTAAAAGATATTTAGGCATTAAA 31028 30 100.0 36 .............................. GATAATAATTCAGAAACAACAGAAAAACTCTCTTGG 30962 30 100.0 36 .............................. ACGATTAGTAAAATTGAAACTGGTGAAACAGATGAT 30896 30 100.0 35 .............................. TTGAAAGTTGTTAATGAATTGATTCCTAAACCTAC 30831 30 96.7 35 ........G..................... TCTACTAGAAACACACTCGGCAGCTTACCATCTAA 30766 30 100.0 36 .............................. GTAGATACCCAATAAGGTATTGACTTCCAACTCCAG 30700 30 100.0 37 .............................. TTGGGTTGAACCATGTTGGCCAATGTAAAAATAATTT 30633 30 100.0 36 .............................. TTTTTTACATTTGATATTACAACTTTTTTCTTGCCA 30567 30 100.0 36 .............................. CCCTTTGATACATTATCACCTTCTATAGTCATTGGA 30501 30 100.0 35 .............................. TAAGGTATACGCACTACCAAACAAGTTGTATTGAA 30436 30 100.0 36 .............................. TATCGTTAAGATATTTAAACATATTTAGGAGGTCTT 30370 30 100.0 35 .............................. AGTCCTAATCGTGCTGTATAAATAGATGTTGTTCC 30305 30 100.0 35 .............................. ATAAATGATACACTAATTATAGTGGAAATAGGTAT 30240 30 96.7 34 ............T................. TTAGAATTAGCTCCTGAAGGTATAGGCTATAGAG 30176 30 93.3 0 ............................TG | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.3 36 ATTGAATAATAACAGTAGATGTATTTAAAT # Left flank : TTCAAAGATAGTTTTAAAGGAAATAATTATGCCAAAAAGAAAATTGATATTAAAAATTCTATGTGTGATTTAAGTTATTTTTGTTATAAATATAGTTTTAAAGGAAGTATAGAGCAATTTGAAGATATGCTAAATAGTAAAGATATTTACTATGAATGTATTGCAGGAATATATTGCTTAATGTTAACGGAAGATGAGATTTCTACAATTATAAGTCCAGAATATAAATTCAATAAGGAGATATTTGATAGATTTCAAGGAAATTTAATAATTTAGAACTACTAATATTCGTATTTATATAATTTAAAACTCAAAATTTAATACTATTTTACCAAGTGATTTTAAATAAATTTTATGTAATGCATTGATAATACTAACTTTATTAAATGATATTTATATAATAAGTATTACTTAAGTTTACTTGGTAAAATATTTAATAAAGATAGTAATTGAGTTGTTTATAGCAAAATACGAATATTAAGAATAGGTATTTTTAATGG # Right flank : TTTTTACAAATACTAAAACTATATAACTTTAATATGTGCTAAAATAAGTATTATGTGCTTTAAAGATTTAATAAGTACAAGCTATATTAGTAATTTATATTTAATTTTATTTGGTAGTCTATTAATACATTACCAAATGGAAATTACGAACAGTTTTTAGCTTTATATATAAAGATATGTTATAATAATGGTAAGTTATGAGGAGTGTAAGTATGAATAATATTAGCAAAAAAATAGAAGAACGTATTCAAGAATTAAATATATCGCAAAGAGAATTGGCTGAAAAAGTTTGTGTTACAGAGGCTACTATATCTAGGTATATAAATGGAGAAAGAATTCCACGTGGTGATATAATTCCCAAAATTGCTAAATCCTTAAAAGTAACAGCAGACTATTTAGTGAATGGAGACAATAATACTAATAAAAATAGTCAAGATATTGATTATGCTTTTGCTGATGCTTTATGTAATGAATGTAAGAAAAAAAATATTGATTTAAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATAATAACAGTAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //