Array 1 226973-231422 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJXL01000002.1 Klebsiella pneumoniae strain EuSCAPE_TR215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 226973 29 100.0 32 ............................. CGATGCCGGATCCCGAGTTTATCCCCGCCGGT 227034 29 100.0 32 ............................. ATATTAAAGGTTTTAATGCGATCTACCTTTAC 227095 29 100.0 32 ............................. ACGGATCAGTAGTTACTGACGGATCGCCCCCA 227156 29 100.0 32 ............................. CTGTGCGAGTTCGGCATGACACCGGCCAGCCG 227217 29 100.0 32 ............................. GAGGGGGCCGAGGGAGCAGTGATCAGCAACGT 227278 29 100.0 32 ............................. CCAAACACAGATTTTCGTAACGTTATCCGGGT 227339 29 100.0 32 ............................. TTTTTTTTCGATCCCCTCCCCACCACTAAACG 227400 29 100.0 32 ............................. CGCCGTTATCCAGAGCAAATGACTGAGTAACC 227461 29 100.0 32 ............................. GCCAGAGCGGTGAAGCGCCAGCGCCGCGCCCG 227522 29 100.0 32 ............................. TCGCTCACCCTGAGCCGCCAGACCGGCACGTG 227583 29 100.0 32 ............................. GGCCCCAAAGGCGAAGAGGCACCGGCCTACGG 227644 29 100.0 32 ............................. CAATGGTGATGGACTATGACCGATAGCAGCGT 227705 29 100.0 32 ............................. CAATATATGGTGTGCTGACGGGCTGTAAAAAT 227766 29 100.0 32 ............................. GATAATGACTGACAATATCTTACCCGCTACCG 227827 29 100.0 32 ............................. GTATTGATAACCTTTAGGATTTATAGAAATGG 227888 29 100.0 32 ............................. TGCTTCCAGCATTTCCGGTGCTGAGGCGATTA 227949 29 100.0 33 ............................. TGGTGCCGCTGAAATTAGCGCCGCTTACCAGGC 228011 29 100.0 32 ............................. CCCTGCGGTGCGCCAGTTCCCTTATTGGTGGC 228072 29 100.0 32 ............................. GCGCAACTTAAACTGTGGGTCTTCTCTGGACA 228133 29 100.0 32 ............................. ATCAACTGATTCGCTCAGCCTGGGAAGATGCA 228194 29 100.0 32 ............................. AATCTGGCACTCGCTTCCGGTGATATTCTCTA 228255 29 100.0 32 ............................. CAGAAAGTCACTTAGCATCGCCTTTCTCCTGT 228316 29 100.0 32 ............................. TCCTATCAGACCAGGATTAACCCGCCTTTCCT 228377 29 100.0 32 ............................. GAATTTCAGTCCAGAAATATTTATCCAGAGGA 228438 29 100.0 32 ............................. CTGGTGGAGCGCGCAGAACTGTATTCGACAAC 228499 29 100.0 32 ............................. GTGGCCTTTCATGACCGTTTCCGAGCATGGAC 228560 29 100.0 32 ............................. CACAGTCTGTTTTCCAGAATGTGCATGGTGCA 228621 29 100.0 32 ............................. TCATCCAGCAGGACAAAGCCAGAAAACTCTTC 228682 29 100.0 32 ............................. CAACTCCGCAGCGCCTGGGAGGGGTTTCGGAT 228743 29 100.0 32 ............................. CTGGTCCCTTTCTTGAATCCGCCGGATGCTGG 228804 29 100.0 0 ............................. - Deletion [228833] 228833 28 86.2 32 ...G.-G.G.................... TACACAAAAACGTTTTACAGTTGCGCAGCGCT C,A [228836,228844] 228895 29 100.0 32 ............................. TGCGCGGCAGAATCGTCGCCGTCCCGCCCGGT 228956 29 100.0 32 ............................. CAGGTCATGATGAAGACCTATCCGCTGGCCGA 229017 29 100.0 32 ............................. GGATTCACCTCGACCTGCTACGACGGACAGTA 229078 29 100.0 32 ............................. GCGACGGCGTGGATAGTCGGGATTTCACGCTA 229139 29 100.0 32 ............................. CCGGTTGACCGCACGGCGCCAGCGCGCCCCTT 229200 29 100.0 32 ............................. GCCGGCAATTTCTCGTTGAGGGCGCAGTTCAG 229261 29 100.0 32 ............................. TTGAACGATTCGGTTACCATCGCCTCCTGCGA 229322 29 100.0 32 ............................. ACACCCGAGATTTACCTGTCAGCCAGCGGCGG 229383 29 100.0 32 ............................. TAATGAATAGCAATTATCCATTTTTAGTAGGG 229444 29 100.0 32 ............................. GCTGCGTTGCCGTATTTACTCGCAGCGGTGGT 229505 29 100.0 32 ............................. CTGTCGGCCCGCCAGCGCTCAATAGGCGCTAC 229566 29 100.0 32 ............................. TGTTAGCTGAGTGTCGCCGGCACCGATATATT 229627 29 100.0 32 ............................. GGAAACCAGTTGCCGATATGCCCCGTAAACGC 229688 29 100.0 32 ............................. AACTCATGACGGGCAAGCGGGTCGCCACCGTT 229749 29 100.0 32 ............................. CGCTCTCTGGTATGTACTGCAACGTGCGATTC 229810 29 100.0 32 ............................. GTAAATAACGATTATGCACTAGAGGAGTTGTC 229871 29 100.0 32 ............................. TCATGCAGCAGATACAGAAAAAGGCTGGGCCG 229932 29 96.6 32 ............................A TATGCAGGCCGCAATTGCCTGTAGCTGCTGCC 229993 29 100.0 32 ............................. GGTGGAACCAATGTCGCCAAAGCAATCGGAGT 230054 29 100.0 32 ............................. AACTGTCCGACGTGGTCGCCGGTCGTGATATG 230115 29 100.0 32 ............................. GGGATAATCTCAGAGTGTAAGTCATTGTCACA 230176 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 230237 29 100.0 32 ............................. TTATTATATCTTCACGGTGAGGGAATGGTCCC 230298 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 230359 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 230420 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 230481 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 230542 29 100.0 32 ............................. TGCTAACCGGCACGTTTACCCGGACGAACACC 230603 29 100.0 32 ............................. CTGATCCCCTCCAACAACACGCCAGGCACAGC 230664 29 100.0 32 ............................. CGGTTAGCAATCCCGGGCACGCTATGGATACC 230725 29 100.0 32 ............................. CGGGGATCAAAAGTTGCCACACCGTCAAAATG 230786 29 100.0 32 ............................. GGGCTGAATGGCGAAAATATTGGCGATCTGTT 230847 29 100.0 32 ............................. TCGACGGTAACCCGTGGAGCAAACTGGAGCCG 230908 29 100.0 32 ............................. GAGGCACTGGGTGAATTATATGTTGAGATTGA 230969 29 100.0 32 ............................. CAGGAAAAGGCGATACAAAAGGCAGTGAGCGA 231030 29 100.0 32 ............................. TGCGGCATCGCTCTTCATGACTGGCGATATGT 231091 28 96.6 32 .....-....................... AGCTACTGGCCGCCAGCCACTGGATGACGTTG 231151 29 100.0 32 ............................. CCGTGAGCCGTGCTCCTCGGTCGCCATCCCCA 231212 29 100.0 34 ............................. CGAACCAATAAGCGCCCCTTGCCGAGTGACTCCC 231275 29 100.0 32 ............................. GGATTTCCATCTCCGGCGTCTGACTACGTTGA 231336 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 231394 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================== ================== 74 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGACCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //