Array 1 24481-23988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFR010000001.1 Azospirillum oleiclasticum strain RWY-5-1-1 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 24480 36 100.0 42 .................................... CGTGTTGGCGTTCGCGCCCGCCATCAGCATTGGCCGCGCCTC 24402 36 100.0 37 .................................... TCCATCCGCTTCTTCGCCTGCTCCGCCTGCCACTCGC 24329 36 100.0 42 .................................... CGGATTTTCTGTACGTTATCCCAGTAAGCCTTGTTCCACCCA 24251 36 100.0 40 .................................... TAGTTCTTGAGCGTGGTGACGATCAGTTCGGCGATGTTGG 24175 36 100.0 42 .................................... CCGCGCTGCTCGGCGTCGTCACCGACGAGTTGGCCCGCCGCG 24097 36 100.0 38 .................................... ATGTCGATGTCGGAGATGCCCTGGAAGGCCCGGAGGTT 24023 36 94.4 0 .C................................A. | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 99.2 40 CTATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Left flank : AGGCGATGCGCGGGTCGTTGTTCAGGAACGCGATCTGCGTGAAGCTCTGGGAAAACCCCAACGCCGCCAAGCCCTGCGACCGGTCACGGGGAACAGCGCGGAGACCGCGGCGTAGTCCGGGAGCGACGGGCATGGCGGATCCTCCCGCTTGCCGGTTTCATGGACTTTAATCCTATCAACAAGTCAATCCCGGCGCAAGGCGGAGAACACCGGCCCCACCGCGTTGCGCCCCGCGCCCCGGTCTCGCGCACCACGTGCACGAGTGGGTGACAGGCTCCCACCGCCGTGATACGTTCCGCTGCCGTTCTTTTTTTCGAGCGCTCCGGTGCACGCAAAAACCCCGGCAGCGCTCGAATCCGGCGGGTCGTTGATTTTCTTGGGTTCTTTGACATCGTTGAGAACAGAACGGAACGAAATTCGGCCCGTCACGAGCCGGTTCGTCGGACCCCTCGCAAACGCGTCGATTCGTCGGCCCTTATCAGCGGCTTGGCACCCACCCT # Right flank : CGGGCTCCGTCTCCGTCGTTGTCGCGGAATGCCAGCCGCTCCCGCCCGGGCACGAGTGCCGGGATCCGGAGTGGACCGTGGCGCAGGACGGAGGGCGCGGGCTTTTGGCAACGCGCTGCCCTCACCCTCCCACGCCTTCGGCGCGGGCCCCTCCCTCTCCCGCCGGAGGCGGGCGAGGGGTTATGGGTCGGAGGGGATTGTCCGCAGAGGTCCTGCGACCCTGCACCGTCACCGTTCCGCGTCAAGAACCTTCATCACCACATCAACCACGGATCGGGCGCGGTCCAGGGCAGCCGCGGCGCGATCCGGCGGGATCTCGGCGTCCGGCCCGAGTTCGTAATCGGCCACGGCCTTTAAGCTGTAGGCCTGCGAAAGGAAGCGCCGGGATTCCGGATCGAAGGCCGGTTCGTCGCGGGACAGCCGGTGGAATTCCGCGTGCACGCCCTGATGCGACTTCGCCACCTTTCCCGTGCACTCGAAGATAAGCGCCTGGGCGGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 5343-5643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFR010000011.1 Azospirillum oleiclasticum strain RWY-5-1-1 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 5343 37 100.0 29 ..................................... GCCGCCGGGCCGGAGGCCGCGGTTTCGAC 5409 37 100.0 29 ..................................... GTCTCGGGAACGGGGCCGCCCTTCGTGCG 5475 37 97.3 29 T.................................... CGTAGGCGGGGCTGCCTTGCATGGCCTGT 5541 37 100.0 29 ..................................... CGTAGGCGGGGCTGCCTTGCATGGCCTGT 5607 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 99.5 29 CAGTGTAGCCGATGGGGATCGGGGGTCCAGCCGCAAC # Left flank : TGCTGGAGGAAGGGAAGGGCGATCTCGATCTTCCCGCGCTGGACCGGCCGTGGGCGCCCATGCCCCTGGAATGGCCACCCCCGGCGCCGGACGACCGGGCATGCTGAGCGGGTACCGGATGATGTGGATGATGGTGCTGTTCGACCTGCCGGTCCTCACCAAGCCCGAGCGCAAGGCGGCGACCCGGTTCCGCCAGTTCCTGCTCGACCAGGGCTTCGAGATGTCGCAGTTTTCCGTCTATCTGCGGTTCTGCAGCGGCAAGGAGCAGGTCGAGACGCTGACCGGCCGAATCGGGAAGAATGTCCCCTCCACCGGAAAGGTCCACATCTTGTGTTTCACCGACCGCCAGTACGAAAACATGGTGTGCTTCGACGGCCGCGCCCGAGCCGCATCACGCAGGAATCCCGAGCAGTACGTCCTGTTTTAGCCATGTCGCGCCCGTTTCCACCACCCTGGAATCCCGGAAAGCCGCTGAAAAATCAACGACTTGCCGGGACAGC # Right flank : CGACGAAGGCCGCGGACCGTCCGGTACGGTTTCCGGGCGATCCGCCGCCGGCACCATCCCGCGCGCCCTCGATGCCGACACGCGTGCTTTCAGCCTGTTGCGGTTCGGCAGCGATCGACGACCGGGTCGTCGATCAGCACGCAGGTCCCGACCAGACCGTCCGTCCGGAAGAACCGGCCGGGGAGCACCGACCCGTCCATGGGGTGCCCGTGCGATCCGGAACGGACCGTGGTTCGGAAGCACCCGGCGGCGAGATCGACCGCCGTCTCCAGATCCTGGAAATCCATCGGGGCCCGTGTGACGGCGTACTGGGCCTTGAAGGCCGCCTCCTTGGCGGAGAAGACCAGCGTCGTCAGCAGCGCGCGCTCGCCTTGCGGGTGGTCCTCCAGGCGGTGGCGCTCACGGGCGGTCATGAACATCGGCACCAGGCTGTCATCGATCCGCGGGTGATCCTCCAGATCGATGCCGATGGCGATGCCGTCCGTCGCCCGGCACAGGGC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGTGTAGCCGATGGGGATCGGGGGTCCAGCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 188048-187486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFR010000013.1 Azospirillum oleiclasticum strain RWY-5-1-1 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 188047 36 100.0 40 .................................... CATGGAGACGAACGCGGACAGGTGCCGGAACATCTGCCGC 187971 36 97.2 39 .C.................................. GTCTGGAAGCTCACCACCGGCAGGGTGAGCGTCGTGTTG 187896 36 100.0 39 .................................... TGCGACGACGAGGTGCTGAAGTTCGGCATCCACGCGCTG 187821 36 100.0 41 .................................... CCGCCGCCGTCCTTCAGCGTCTTCGAGCACAGCTCTGCCGC 187744 36 100.0 38 .................................... GTGCCGGTCTCCTCCGATCCCTCGCTCATGCGGGCGGA 187670 36 100.0 39 .................................... ACCATCAGGACGGGGAAGCTCTTCTTCGCCACCTTCAGG 187595 36 97.2 38 .....T.............................. ACGCCGGCGTTCTCCTCGCTGTCGTCGGTGTAGCGGAA 187521 36 83.3 0 .........................G...GC..CTG | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 97.2 39 CTATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Left flank : TTCGGCGGCCCTTTTCAGCGGCTTGGCAACCCCCC # Right flank : TTTGGACGCCGGGCTTTCACAGGCGCCAATCCTCTCCCACCGTCGTCCCCGGCTTGACCGGGGATCCGGGCACATCGGGCAAGTCCCTGGACGACCGGATCCCCGCCTTCGCGCTACGGTATGCACACAACGCTGGAAGCGCCCAACAACCCTCTCCCGCCCCGGGAGAGGGTGGCGCCGGCAGGCGCCGGGTGAGGGTCCAACGCCGCGGCTTCGCTCCACGTTCCCGCAACGAGCCCTCACCCGGCCGGCTTGCGCCGGCCACCCTCTCCCGGGGCGGGAGAGGGTTTTCCCCCTCACCCGGCGCTGCGCGCCGACCTCTCCCCGGGGGGGAGAGGTGGAGAGCGTCTCACGTCCACAATGTGTGCATGCCGTAGCGCTTTCGCCGGGATTACGATGACCGTGCTTCAGGACAACGATCCCCGAATGCGACAGCCCTGGGGCGTGCAGTCATGGTCAAGCGCGTCATCGTCCCCGGACAGCCCCGCCCGACCCGTCAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 67560-67298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFR010000036.1 Azospirillum oleiclasticum strain RWY-5-1-1 contig36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ================================== ================== 67559 42 100.0 34 .......................................... ACTGGCGCGACAAGGATGGAGCGGTGCGCGCCGA 67483 42 90.5 30 ...GGTG................................... GGCTCCCTTGCCCACACCGCATGCCCAGCC 67411 42 100.0 30 .......................................... GGCTCCCTTGCCCACACCGCATGCCCAGCC 67339 42 100.0 0 .......................................... | ========== ====== ====== ====== ========================================== ================================== ================== 4 42 97.6 32 AGAACGCGCTTCAATGAGGCCCCGGCATTTCTGCCGGGGATA # Left flank : GCTCCAGCTCCACCTGTTGGGAGACGAGGTCGGCGTAGGTCTCGTCGAGCTTCCGGATCACGTCGATCCAGGCACTCTCCATATCCGCCGCACCCGCCTCCTCGGGCAGCGTGACCGATGGGAACCGTGTTGCCGCCATGCCACCGTCCGCAACGGCGCGCGGATGCGCGCGCTCGGGAAGGCGCGAGGTTAGCACGCCGGGGGAGGCGGGGGCGAGGGTGGTTGGGGGCGCGCCATGGTGATCGCAATCAGCGATCATTGTCCTGAGGCAAGACCACCGTCATCCCCGCGAAGGCGGGGATCCAGGGAAAGCCGCGTCCGCGGCGACATGAGTCACGTGGCTCGCGGACGCTCGCCCTGGATTCCCGCCTTCGCGGGAAAGACGAAAAGTCCTGCTCAGGAAAAAAGATCAGCAAATGCGATCCCCGTGGGGCGGGTACCACCGAGGCCCCCGGCGGGTGCCGGGGGGCTGGTGGTCGCGGGGATCATGCTGTTGTTCC # Right flank : GCGCTGAAGAAGGCGGAATTATGTAGCACCCGCCACCAGCTCACCCTACCGCCTACGAACGATCTAGGGGACCATGGAAGCGGCCGGGAAGGGTGTTGGCGCACCCGACCCGGCCTGACCACAACCCGAGCTTCTGGAGAGCATCGGACCATGGCTGGTTCCCAGCATAGCACGTGCGCGCTCCGGCGCTGCGCGTCGATCCCCCATTGAGGTGCGGCACCATGGCCGAGCCTCACGTCGTCTCCGCCCTGCGGGACAAGCACGCCGAGATCCAGGGCCGCATCCGGGAAGCCGAGTGCGAGCTTGCCCGGCTCCGTGACGATCTCTCCGCCGTCGCCCGCGCCCTGATCGTCTTCGATCCCGACTTCGATCTCCGCACCGTCCGCCCCAAGCGTCCCGCCCGCCGGGGGAAGTGGTTCGGGCCGGGAGAGTGCGCCCGCTTCTGCTACGACATCCTCAGGCCGGCAACCGCCCCCGTCACCACACGGGAGATCGTGGAG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAACGCGCTTCAATGAGGCCCCGGCATTTCTGCCGGGGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 296763-295755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFR010000009.1 Azospirillum oleiclasticum strain RWY-5-1-1 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 296762 36 100.0 40 .................................... CCGGCGTCGCGTCGATGGGGCTTGCCAAGGCTGCCGTCGC 296686 36 100.0 38 .................................... CCCGCCAGTGCTGGCCGGGGTGGGCGGCCTGGGGGAAC 296612 36 100.0 39 .................................... CCCTGCGCGAGGCGCGGGACGAGGATCGATTCTGGCTGG 296537 36 100.0 38 .................................... GACCCCTTCGTCCTGGCCATCCTGCGCCAGATCGGCGT 296463 36 100.0 38 .................................... GCGGAGTTGTCAGCGTCGGAAAACGAGGGCATTGCTTT 296389 36 100.0 40 .................................... CAGGACCGCGTACGCCTTGTCAAACGCCTCGGAAATCTCG 296313 36 100.0 39 .................................... TATGACATGGAGCGGCCTTAGCAGTGGGAATAAACCCAA 296238 36 100.0 38 .................................... ATTGTCGATAAATTCCAGGCACAAAGCACAAGCTTCTA 296164 36 100.0 38 .................................... CGCCCTCGTTCACCAGCGCGAGCGACAAGCCGGACCCG 296090 36 100.0 39 .................................... ACATCCCAGTCGGACAGCAGGCTCAGCGCGTTGTCCGCC 296015 36 100.0 38 .................................... GGCGTGGAGCCGGCGGTAGGCCGGGATCAGGCGTCCGC 295941 36 100.0 40 .................................... ACCAACGTCATCTGGAGAGGCGACATCGGCGCTTTCATCT 295865 36 100.0 39 .................................... ATGAGGCTGGTACCGGATATCTGGGATTCCGGCAGTGCG 295790 36 94.4 0 .........................C........C. | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 99.6 39 GTATCCCCGGCCTTCGGGCCGGGGCTTTATTGAAGC # Left flank : CCAGATAGGCCAGACGGGGGCAGTAGACGTACTCGTTGATCATGCGGGCGGGCAGGGGCGGCGTGCCGGTGGGCAGCGGAACCGGCGGGAACGGCAACTCCGGCTGCCATTCGGTGACGGCGGCGTCGGGGATCACGGCATCCGGCCCGGCCATGGGATGTCTCTCGCGGTGGAACTGCCGGGCGCCTGTTCGTCCCGACACCGCGGCATGGGGCGATGATGCACGCTCCGGCTTTGCGAGTCCAGGGGCCGGGAAGGGCTTGGTTGCGGCCGACGTTGCGATTATCATGCGCGCGGTCCGCCGCCCGGATGCGAGCACCCTTGTGGCGCATCACCCCCCGGGGGTCGCTCGAATCGGTCTTTTACATTGTGAATCAACCGGTTGGCGCTCCGTCGCACGGGCCGGGGCGCCGGATTACGGAAAATCAACGCCGCTCGGCGGAGGGTGCTCGAATCCCGCCTTGCAAGGCGTTGAGTTTGCAGGCAGTTTTCGGGGGGCC # Right flank : GGCCCCCCGGCCCGGTTGCCGGGCGTATCCTCCACCCTCCGGCGCACCGCGGCCGCGATGGCCGGCAGGTCGGTGGTGTCGATGCGTTGGCTGGCGTAGGAGTGGAGGAGCAGGCTGTCGGTCAGGTGTGGGTCGTACTTTCCCGCCACACGCGTGGATGCCGATCGAAATGCCGCGGGGTGCTGCGTCCAGGCCACGGGCGCGCAGGGCGAGCGCCAGCGTGCCCAGCTTCACCGTGCCCACCCACGGGAAAAGCCAGAGGTCGCCGTCGTCGTCGATCAGCCCCGTGCGGTCCAGGCGGTGGCGGGCGAAGGCCGTCCGCCCCTCCGCCAGCAGGGACCGCGCCGTGGCGTCGAGGAAGGCCGGGACGTCGTCCGCCGTGTAGAGCGCGCGCATCGCCTCCACGACCGTGTCGTGCAGGTCGCCGCCGTTGCCGCCGAAGGGGGGCGGACGCCCGGCCCTGGCGGGCTCGACCTCGATCAGTCTCTCCCGGTCCAGCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCCCGGCCTTCGGGCCGGGGCTTTATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.10,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 299404-300486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFR010000009.1 Azospirillum oleiclasticum strain RWY-5-1-1 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 299404 36 100.0 41 .................................... TGGAGCGATTCGAACATGGCGACATCCGCGAAGCGCTCGCC 299481 36 100.0 37 .................................... ATAAGAAAGAACTTGGGTTTCTCCATTTAGCCAAGAT 299554 36 100.0 38 .................................... GTAGCCGGACTCAAGGGCCTGCGCTTGTTGCCCGAGGA 299628 36 100.0 37 .................................... GCCGGCATCGCCATCCACAACCTGCTGAAGACGCATC 299701 36 100.0 40 .................................... CACAGACGATCAGAGACGCGGTGAAGCCATCACCGGAACG 299777 36 100.0 38 .................................... GCCGCCACTTTGTACGCGGCTTCCTTGAACGCGTCGGA 299851 36 100.0 42 .................................... GTAGACCAACCGCGGGGTAGAGATGCATCCTGTCCATGGCTG 299929 36 100.0 37 .................................... TAGGCCAGCCACGCCTCCGGCGTCTGCCAGTGGAACA 300002 36 100.0 42 .................................... GCAATTCTTTTCGGATCGTTGCCCGGCAATGATTGAACCACG 300080 36 100.0 37 .................................... GGCGACGGCGGCTTCGCCACCTTCTACGGTGTGGGTG 300153 36 94.4 39 .......C...........................T TTTCGTGATCGGCATGGCGCACCTCGCTGTGTGCATGCC 300228 36 91.7 39 ......TC...........................T TTTCGTGATCGGCATGGCGCACCTCGCTGTGTGCATGCC 300303 36 94.4 39 ......TC............................ GAGTTTCAGAAGGATACCCTCCTTCTCCGTGGAGCGCCC 300378 36 91.7 37 .......C...........T.........C...... ACTGCCTACCAAGTCGGGTGGTGAACATTTCCATTTG 300451 36 80.6 0 .......CA..................GG...GG.T | ========== ====== ====== ====== ==================================== ========================================== ================== 15 36 96.9 39 CTATCCCTGGCAGAAATGCCGGGGCTTTATTGAAGC # Left flank : TGCGCGACGAGAACCTGTACGTGATCACCTACGACATCGCCGACCCCAAGCGCTGGCGCAAGGTCTTCCGGCTGATGGAGGGATACGGGGAATGGCTCCAGTTCTCCGTCTTCCAGTGCCGCCTCGGCCGGCGCCGCCTGACCGAGCTGCGCACGCAGCTGGAGACGCGCATCAAGCCCAAGGAGGACCACGTCCTCATCCTCGACCTCGGCCCCGCCGACGGCGTGCGCCCGCGGGTGGACAGCCTGGGCAGGATCTTCGAACCCGTGGTGCGCCGGCCCACGATCGTGTAGCCTTCCGCCGACCGGATTCGAGCGGTCTTGTGACGCGCCACCCCCCGGGGGTCGCTCGAATCGCTCTTTGACATTGTGAATCAAGTGGTTGGCGGACGCGAGGGGAGACCCGCGCCCGTGATTCTGGAAAATGCTGCCACCGTCGCCAGGGGGTGCTCGAATCCTGCCTTGCAAACCATTGAGATCGCTTATAGATTCGGGGGCGCC # Right flank : TGCGTCCCCGCCGCCACGTTTGTCGATGTCATCCGCTGGACGGCCCGGCATCATCCCGGTGTCTCAAGGGTAATGCCCGTCGCCGAAGCGAACGGCGCCGTAAGGGCGTCACGGGTCACAGACGCCGCAGCTCGGACAGGATCCGGCGTCCGATGCGTGGCTTGAGCGTCTTCTTGTTGGTGAGATCCACCCGCAGCCCAAGCGCCTCCGACAACTCCATCTGAAGGCCGACATGGTCGATCAGGGTGACGCCCTCCCCAAGGTCGACGAGGATGTCCACGTCGCTGTCCTCACGCTGCTCCCCGCGGACATGGGAACCGAACACACCCATCTCGCGGATGGGGTAACGGCTTTGCAGCGCCGGCCGAATTGCAACGCCTCAGTGCCACCACCCCTTGCACGGCAACGCAGGGGAGAATAACGTCGCCCCCACTCTCCTCTGCCTCCGGAGCCCCCCCATGTCACCCACCCCTCCCTCTCCCGTCGCCCCCACGCTTGCC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCCCTGGCAGAAATGCCGGGGCTTTATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 308694-308221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFR010000009.1 Azospirillum oleiclasticum strain RWY-5-1-1 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 308693 36 100.0 38 .................................... GTGCCGGCGGTGGTGGGCAACCATGGGCGGATGACGCA 308619 36 100.0 38 .................................... GTGCCGGCGGTGGTGGGCAACCATGGGCGGATGACGCA 308545 36 100.0 40 .................................... CCTCAAGAAAATCGGCGCTCGTTGCCCGATGGACGGTCCA 308469 36 100.0 40 .................................... ACGCCGCCGCCGGGCAGGTACTCCCGCCACCCGCCGGACG 308393 36 100.0 27 .................................... CAAGAATGGTCACACCGACCCGCACAC Deletion [308331] 308330 36 100.0 38 .................................... TCGAACAACATGCAATCGAAGTTTGGAACCGTCGGGTC 308256 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 100.0 37 CTATCCCCGGCAGAAATGCCGGGGCTTTATTGAAGC # Left flank : GGCGGCACGCCTCGTGCCGGGTTGGCGGCGATGACGCCTTCCGGCCGGTCGCCGCGTCGCGCAGGAAGCGGCCGATGTCGACCGGCATCGAACCCTTCACCGACCAGGCGCCGGGCCGATGGACGACGTGATGGCCGATGCGGCCGCGCTCGGTTGCCGGCGTGCCACCCTCCGACGGCGGAGCCCTCTTCCGTCATGGAAGCAGGGGGACGCGGACGCCTCGCGAACCCCGCCCCGCGACGCCATGGCACGCTTGGTCGCCCCGCCCGTTCCGGTTATCCTCCCCACCCGGGGCCGCCCACCGGCCCGATTCGAGCGGTCTTGTGACGCTCCACCCCCCGGGGGTCGCTCGAATCGCTGTTTGACATTGTGGATCAAGGACTTGGCCGCCGCGTCGGGATGGTGGAAGCCAAGATTACGGAAAATCGTGCGGCTTTGGCGAGGGGTGCTCGAACCCCGTCTTGCAAGCCGTTGAAACGGCTTGTAGATTTCGGGGTGCC # Right flank : CGCTCGTAGGTCTCCGGGGACAGCAGCCCCCGCCGGGGCTTTGCGTCGTTACCGGCGGGGCGGCCTCATCCCTCCTCCGGGCGGAACAGCCCGAGTCCGAGATGGCAATCCCAGCCGAGCGCGAGGGGGCCCTGGACCGGCTCCGGGAAGGCGACGCGCCAGAGGCTGCCCGTGGGATCCGGCCGGGGGCGGGTGACGCGGCTTTCCAGGCGGGTGGCGAAGGCGTGGGGCGGCAGGTTGCTGCCGGGCGTGACCGGGGTCGCGGCCAGCCGCTCCAGCCGCGCCGGGGCGGGACGGCCGCGGAAGGCGAGGTCGCGGGCGAGCAGGGCCTCGGGCCCCAGCCCCCGCTTGGGGTGCAGCGGGCTGAACCAGGGCGTGGCGGAGACCCACACCGCGGCGCGCCCCGCCAGCCGGCAGGGGGCGGCGTCGGCCATGCCCAGCCACACGCAGCGGACCGGCCATTCCCCCTGCCGCCCGTCGAACAGCCGCTCGCAGGCGGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCCCCGGCAGAAATGCCGGGGCTTTATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 4 314238-313853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFR010000009.1 Azospirillum oleiclasticum strain RWY-5-1-1 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 314237 32 100.0 36 ................................ ACGGGGACTTCGCCTGCTCGGGCTGCTGCCCGTTCA 314169 32 100.0 41 ................................ CCGACCCCCGGCCGCGGCTTGAACACCGTGCCGCTGGTTCA 314096 32 100.0 36 ................................ ACGGGGACTTCGCCTGCTCGGGCTGCTGCCCGTTCA 314028 32 100.0 41 ................................ CAGCAGCGGGCGGCGTGGGGGAGGCGGCGATCCTGGGTTCG 313955 32 90.6 39 ..C.GA.......................... AGCGCCTCTACCAGCTCGCTCAACAGCGCGTCGGGTTCG 313884 32 81.2 0 ...C.T...............T.......CGG | ========== ====== ====== ====== ================================ ========================================= ================== 6 32 95.3 39 GAGGCCATCCGCGTTCGGGAGCGGATTGAAAC # Left flank : TGCCGCCGGTTAACCCTGTTTTGCCGCCGTGGCCGATTCCATCCACAGGGTACGTGGAAAGCGTGCCGAATTTCCCTGTTGCATCAACCGCATGGCAACAGCACTGTTC # Right flank : GTGCCCACGGGGTTGGAGCCTTGGCGTCGTCCATTCCACGGCGTCGGTGTATCGGGGCGCTTTTCTTGTGTGAGCCACGCGCCTGCGTCCGGCCCCCCTCCCGACCTCCCCCCATCTTCGACGGGGGAGGAGAGGTTGGTGGTCCCCCACGTCGCGGGGGGAGGAGAAGAAAGCCCTCCCCCGTCGAAGATGGGGGAGGGTTGGGTGGGGGCCGGGGCGGGAGTGCCTACAGCACCCAGAAATCCCGCTGTTCCGGCAGCGGGGCGCCGCCCACCGACGCGCTGCGGGCCAAGCCGTGGGCGGACAGGGCGTACATGCGCAGGGTGTCGCGGGGGCCGAGTTCCTTCGCGGCGCGGGCCATCAGGGCGCGGGCCTGGCGGTCGGTCAGGCGGGCCTCGAACACGCTCTTCTGCACGCGCACGCCCCATTCCTCCAGCAGGGCGGAGACGCGGCGGCGGCGGCGGTCGCTTTCCACGTCGTAGCAGAAGACCATCACCATC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGCCATCCGCGTTCGGGAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA //