Array 1 159391-158891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIR01000002.1 Lacticaseibacillus rhamnosus strain Lrh13 Lrh13_contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 159390 36 100.0 30 .................................... TGCTAATGATACCTATCCGGACTTGTTTCG 159324 36 100.0 30 .................................... TACAAGGATGGCGGCAAGGTTTGGCAAGAC 159258 36 100.0 30 .................................... CAATATTTTGCCCCTTGTTCCGTTGCGCCA 159192 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 159126 36 100.0 30 .................................... AAGCAACATATCAATCAAGCCGAAAAAAAG 159060 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 158994 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 158928 36 86.1 0 .......................AA.C....G...G | T,C [158894,158900] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : TGTCAGATCAATCAGTTCAAGAACAAGTTCGGCCTCAACGGTGTACCACTTTC # Right flank : ACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 26-522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIR01000076.1 Lacticaseibacillus rhamnosus strain Lrh13 Lrh13_contig00076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 92 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 158 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 224 36 100.0 29 .................................... CGGCGAACGCAATGGTCTTCGCTGACAGC 289 36 100.0 30 .................................... GTAGTGCATACCATCATCACGAGTGCCGTT 355 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 421 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 487 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : ACGCTTAACGCTCTCCGGTTGGTCTG # Right flank : GCGGCATCTTCAAAATCAAACGACGCGCAGTCTCAGGTAGATGTCAGATCAATCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 31-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIR01000079.1 Lacticaseibacillus rhamnosus strain Lrh13 Lrh13_contig00079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31 36 100.0 30 .................................... TTGACTAAAGCCTTTAATAAGCTAACTCGC 97 36 100.0 29 .................................... GAAGGCGACTACCAAGGTGATGAGTTAGT 162 36 100.0 30 .................................... AGAATCACTCGATTGGAAGACCATGTAGGC 228 36 100.0 30 .................................... TCAATAACTTCGAATCCTTCATCGGTTGGC 294 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : TTATATTTTGTATGACGAGCCAAACCACCCG # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 31-330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTIR01000078.1 Lacticaseibacillus rhamnosus strain Lrh13 Lrh13_contig00078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31 36 100.0 30 .................................... CCTCACGGCTAATGACTGGATCCCATACGG 97 36 100.0 30 .................................... TCAAATGCTTTCAGAGACGATGAATCGTCA 163 36 100.0 30 .................................... GCATTCAGCGTTGGGACAATCCTTCCAGAA 229 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 295 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : ACAGAAGTATTATTTCATGCCAAAGAGAGTG # Right flank : TAATGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //