Array 1 8572-5429 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQQI01000002.1 Listeria monocytogenes strain ICDC-LM3069 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8571 36 100.0 30 .................................... CCTCCCGCTATGAATCCATCGTGACCTTCT 8505 36 100.0 30 .................................... TTGCAGTCTTCCCATTTATTTTGACTGCCT 8439 36 100.0 30 .................................... ATTACCTTTGGATTACAACGCATTGCGTGT 8373 36 100.0 30 .................................... TATCCGAGATAGCTTACATCACATCTGAGC 8307 36 100.0 30 .................................... TGGGCATTTGATGCAGTAAAAGCGAATGAT 8241 36 100.0 30 .................................... TATTATTCAACGTGCTGAACGAAGCAAACA 8175 36 100.0 30 .................................... GATTAAAGTGCTATGTAACTTAGATTTGAT 8109 36 100.0 30 .................................... TCAGTCACAATGGTTACTTCCTGTTCGCTA 8043 36 100.0 30 .................................... AATTAAACGAGCATTACAATAGGCCATTCC 7977 36 100.0 30 .................................... TAAGCAAGTTGCAGATAAGAAAACCATGTC 7911 36 100.0 30 .................................... TGATTATGCGCAAAAAGCTAGCGTTAAATA 7845 36 100.0 30 .................................... TTGTGCAAATTTAAGAGGTGCAAATTTAAG 7779 36 100.0 30 .................................... TTCGTATCTAGATAGCTTGTAATCATTTCC 7713 36 100.0 30 .................................... CATCGAACTCCCCGTTAGTAGACATAGTAT 7647 36 100.0 30 .................................... CTAATTATCCTGAAAAAGATTTGTTTAATG 7581 36 100.0 31 .................................... TAAACGTTTTTGCATCTAACCATAAAAGGTT 7514 36 100.0 30 .................................... AGATTACTTTTTCACTGTTTATATGCGCGA 7448 36 100.0 30 .................................... TTGGATTAGCAATGGTTACTAACATGTATT 7382 36 100.0 30 .................................... ATCAAACTTGATAGCAATATAAAGCCTGTC 7316 36 100.0 30 .................................... TATTCCATCGTTTCGCGATAACTACCGTCT 7250 36 100.0 30 .................................... CTTTATGCAATTCAAAGGAACATTAGATGC 7184 36 100.0 30 .................................... AATAACTTGTCATTATTTATCATCCTTTCT 7118 36 100.0 30 .................................... AGTCTGAATGTTGCAACTGCTACACCGCTT 7052 36 100.0 30 .................................... TTATTTTATGTTTTAGATTAAAGCCGAGCA 6986 36 100.0 30 .................................... TTTTTCTGCGGCACTTGAACCGTCTAGCGC 6920 36 100.0 30 .................................... ATCTAACATTGTTTTATTAACAATTTGAAT 6854 36 100.0 30 .................................... ATCTGCATTCGCAATCATACTTTTTTGTTC 6788 36 100.0 30 .................................... CGTTAATATTAAATACCTCTCGAAGCGCTT 6722 36 100.0 30 .................................... TTCAGACTGTAACGGATACAGAGTGCAATA 6656 36 100.0 30 .................................... TGGTGCAAATTTAAGTTATGCAGATTTAAG 6590 36 100.0 30 .................................... GAAGCGATTGTTTTGCAACAAATTCACTAC 6524 36 100.0 30 .................................... TATGGAGTAAATTAATTTCTAAAAATGTAA 6458 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 6392 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6326 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6260 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6194 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6128 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6062 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5996 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5930 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5864 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5798 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5732 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5665 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5599 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5533 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5467 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5432,5435,5440] ========== ====== ====== ====== ==================================== =============================== ================== 48 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1174589-1173260 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQQI01000001.1 Listeria monocytogenes strain ICDC-LM3069 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1174588 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 1174522 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 1174457 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 1174393 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 1174327 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [1174318] 1174259 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 1174194 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 1174129 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 1174063 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 1173999 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 1173934 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 1173869 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 1173804 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 1173741 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 1173678 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 1173612 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 1173549 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 1173484 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1173418 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1173353 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1173289 29 93.1 0 .......................C....C | A [1173264] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //