Array 1 683401-684748 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSSQ01000001.1 Vibrio cholerae strain DL2114 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 683401 28 100.0 32 ............................ GTTACTGGTTTTCATAATGTAAGGCGTGTGCC 683461 28 100.0 32 ............................ TTACGGTTTAACTGAGCAAGCAAAAGTATTGG 683521 28 100.0 32 ............................ AGATTTTCAGTTAGATGGTTCAACGGTTTACG 683581 28 100.0 32 ............................ TCATAAATATATTCGTAATACTTGCCAGCCAT 683641 28 100.0 32 ............................ ATTATCATCAAAGCACTTGCTCAAGATTTGAT 683701 28 100.0 32 ............................ TCAAGCGTATTGCAAAGGATGTAAATGCAAAC 683761 28 100.0 32 ............................ TGCGTAAACCAATGGCGACCCAACTCGAACCT 683821 28 100.0 32 ............................ TGTTGTTTTGCTTCGGCGCTTTTGGCGCAAGC 683881 28 100.0 32 ............................ CACAACTGGACTCTACTATTTGAAACTTTAAC 683941 28 100.0 32 ............................ GTCATTACAAGATGCATTTTCTTGCTAAAATG 684001 28 100.0 32 ............................ GCTACGCTCTTCGACTTCCAGCTCCAAAGCAT 684061 28 100.0 32 ............................ AGTCGTTAGCTTTAACGAACCAAACCCATACG 684121 28 100.0 32 ............................ TGAGTGCCATGGTCTAAGACGTTGTAAGCATT 684181 28 100.0 32 ............................ ATCAATAAAGAAATCGTATGTCATATCTTGGT 684241 28 100.0 32 ............................ GAAGCCAAGCTCAAGAATATGAATCTGGTGAA 684301 28 100.0 32 ............................ ATGATCACGCCGCACCAAGTCGGATAGCCCTT 684361 28 100.0 32 ............................ TTTTAGTGTATTGGCAAAGCGAGATTCTGCCG 684421 28 100.0 32 ............................ ACAGAAAGCGAAGCAGGAAACATCCTACTCAC 684481 28 100.0 32 ............................ ATGCAGCAATACATCTATCGTCACTCCGATCC 684541 28 100.0 32 ............................ TATAAGATGAATCCGATAAACAAGCCGCAAGC 684601 28 96.4 32 ...........T................ GCGCTCACTCAAACCCCAATCCTGACGGCCAG 684661 28 100.0 32 ............................ TACAACGAAGCAATTTTCGGTTAATAAGGGAA 684721 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTGGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCAGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33993-32581 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSSQ01000020.1 Vibrio cholerae strain DL2114 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33992 28 100.0 32 ............................ TTCGATCACGACTTCGCCAACTGGCTGTACGT 33932 28 100.0 32 ............................ ATCAATCGACTATCATCAAGCTGAAGCATCGT 33872 28 100.0 32 ............................ TAGCAAGGTTTCCATTTTTTCAGGGTCGAATT 33812 28 100.0 32 ............................ TGTCTAAAAAGCCGCCTCTGTGCTCGCTCATA 33752 28 100.0 32 ............................ TAGCTCTGAACCATCCGTGAAAGTAAATGGAT 33692 28 100.0 33 ............................ GCTCAGCTAATGAATGAAGTGATGACGTATTGC 33631 28 100.0 32 ............................ GTAAAGCTTAACCGACTTACCAACCCACAAAT 33571 28 100.0 32 ............................ TGATCGGTTGCTTCAGTGAAGAGGCGGATGGA 33511 28 100.0 32 ............................ AACGCTGGCCAGAGTCTTAACTGCCTCCTCTT 33451 28 100.0 33 ............................ GAACGTTGATCTCTGAGGATGAAATTCCGCCAA 33390 28 100.0 32 ............................ AACCATAGGAGGGCAATCAATCAGTACATAAT 33330 28 100.0 32 ............................ TTTGAGGTTGCAGTTTGGGCAACGATTTAGCC 33270 28 100.0 32 ............................ CAAGATTTGCGCACCATGGCACTCACGGGCGT 33210 28 100.0 32 ............................ TTTACAGTAAGCGCGTTTCTCAATCTTGCCAT 33150 28 100.0 32 ............................ TGCTGCAACCGCATCAGTACACACAGATTTAT 33090 28 100.0 32 ............................ TCATCGCTCATTTTTACTGGATCAACGTCATG 33030 28 100.0 32 ............................ AGAATGCCGCCAGTGGTATGAGGGATAGGGCT 32970 28 100.0 33 ............................ AGTTTTGGCGCAGTGTGTTCACGTCCCATTTAT 32909 28 100.0 32 ............................ ATTTTGAAGCGATTCAGAGTGCATTCGAGAAT 32849 28 100.0 32 ............................ TGTCGCCATATTTCCTGCAATGATTTTCCCGA 32789 28 96.4 32 ....................G....... AGTCGTTACGATTTGCAAGCGACCATTTGCGC 32729 28 100.0 32 ............................ ATGCCGACACTTCGCCCGCCGTAAGTAACGGT 32669 28 96.4 32 ...........T................ GCAATCAGCAGATAGATCACGCCTGCCTTGGC 32609 28 82.1 0 ...........A..C.A.....G.A... | T [32589] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATCTTATGGTTGGGGTTATATAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTTTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGGAACTACGATGTGACGTTAGGGGATACAGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCCCGTATCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //