Array 1 95625-97544 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXW01000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X658 NODE_12_length_104707_cov_73.820500, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95625 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 95686 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 95747 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 95808 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 95869 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 95930 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 95991 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 96052 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 96113 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 96174 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96235 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 96296 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96357 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96418 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96479 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96540 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96601 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96662 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96723 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 96784 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 96845 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 96906 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96967 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 97029 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 97090 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 97151 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 97212 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 97273 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 97334 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97395 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97456 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97517 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58926-57321 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRXW01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain X658 NODE_30_length_67926_cov_55.849494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58925 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 58864 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 58803 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 58742 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 58681 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 58619 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 58558 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 58491 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 58430 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 58369 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 58308 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 58247 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 58186 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 58125 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 58064 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 58002 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 57899 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57838 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57777 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57716 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 57655 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 57594 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57533 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57472 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57411 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57350 29 96.6 0 A............................ | A [57323] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //