Array 1 24723-26276 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANRI01000006.1 Neisseria meningitidis 97014 NM97014.contig.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24723 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 24789 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 24855 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 24921 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 24987 36 100.0 30 .................................... TTGCCGGATGAAGAGGTGGCGTTTGTTGCC 25053 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 25119 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 25185 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 25251 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 25317 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 25383 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 25449 36 100.0 30 .................................... TCATAATTGTATAGGTAAATGTCATCAACA 25515 36 100.0 30 .................................... CTGATGAGTTCTCTACGCATGGGACGTAGG 25581 36 100.0 30 .................................... TGAAGTTGCGCCGATTGCACCAACTGATGC 25647 36 100.0 30 .................................... ATCCGTTTGAGGCTAACAAGCCAGCCACTA 25713 36 100.0 30 .................................... AAATTCGAGCAAAGATAGAAGCAACTTGTT 25779 36 100.0 30 .................................... TGAGTTGTAGTTGTAGCTAGCATCAATAGA 25845 36 100.0 30 .................................... AAATGACGATGCGGAACGATTCAGGCAGAG 25911 36 100.0 30 .................................... GTGTGCCTCACTGTGCGCATTAAGTTGGTC 25977 36 100.0 30 .................................... AATGACGAGGCTTTGGATTGCGAGGATTTA 26043 36 100.0 30 .................................... TTGAGAGCAATATTTGTTCTCTCAGCATCG 26109 36 100.0 30 .................................... GCATTCTCCAACACTCGCGATACGGTGTTC 26175 36 100.0 30 .................................... TCATCAGACCTTTACTGTTCAGACGAGACA 26241 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //