Array 1 128355-126679 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCJP01000009.1 Escherichia coli strain 27_CAASB NODE_9_length_198484_cov_34.126624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128354 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 128293 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 128232 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 128171 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 128110 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 128049 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 127988 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 127927 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 127866 29 96.6 32 ............C................ TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 127805 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 127744 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 127683 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 127622 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 127561 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 127500 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 127439 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 127378 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127317 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 127256 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127195 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 127134 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 127073 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 127012 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 126951 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 126890 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 126829 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 126768 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126707 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155490-154058 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCJP01000009.1 Escherichia coli strain 27_CAASB NODE_9_length_198484_cov_34.126624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155489 29 100.0 32 ............................. TATCAGGAGCGTGAATAGTTTTGTGTTTTTGT 155428 29 100.0 32 ............................. GCCGCTGTATCCGTAGTCCGGGTGATACGGTG 155367 29 100.0 32 ............................. GCTCACTACCGCCGAAATCGCGCAGGCACTCC 155306 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 155245 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 155184 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 155123 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 155062 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 155001 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 154940 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 154879 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 154818 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 154757 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 154696 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 154635 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 154574 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 154513 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 154452 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 154391 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 154330 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 154269 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 154208 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 154147 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 154086 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //