Array 1 684453-679951 **** Predicted by CRISPRDetect 2.4 *** >NC_002977.6 Methylococcus capsulatus str. Bath, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 684452 37 100.0 35 ..................................... AATGGCAATCATTACGACATCCCGATGATTATTGG 684380 37 100.0 34 ..................................... GACTGACCTGAGGAGGACGCTAATGATGATGATG 684309 37 100.0 36 ..................................... TGCCAACACTATGCTGAAACTGGAAACGGTAGCGAC 684236 37 100.0 35 ..................................... TGCAAGCTATTATTGCCAGATGGTCGAGGATGGCT 684164 37 100.0 35 ..................................... AAGGGCTGATCATCGTCACGATGGGGCTGCGTAGC 684092 37 100.0 34 ..................................... TCTTGTCAGTCGCGCCTTGATGGCGCGGACGGAT 684021 37 100.0 35 ..................................... GCTAGCTGATGGCGCGGATGAGGACTAAGAGCTAC 683949 37 100.0 35 ..................................... CTCAGATAATGGGCGATCAACTGGGCTTTGCGATG 683877 37 100.0 35 ..................................... GCTATTCGCGGCGGCCCGCGATGACCGCCGCCCTT 683805 37 100.0 37 ..................................... TCTACATGATGTCTTGCAAGATTGAGCGAGCCTTGCT 683731 37 100.0 36 ..................................... CTCGGGTTAGTCCAAGCGCCCCGGCCAATCCGTGAC 683658 37 100.0 36 ..................................... GGGTCTAGCATGACGCTTGTCCAGAACGCATGTCGC 683585 37 100.0 34 ..................................... ATATTCACATTCATTTGGAGTGCGTTTGCCGCGA 683514 37 100.0 35 ..................................... GCAACATGCTCTTGATGCTCAAGCATGGACGCTAT 683442 37 100.0 35 ..................................... ACGCTTACCCTAACTTTGTTAGGACCTTTCCTCAC 683370 37 100.0 35 ..................................... ACGGTCACGAGCTTTTATGTCGTGCTCGGCGGCAC 683298 37 100.0 33 ..................................... TCTGAATATGGGCACGATTTGTGTGTGAATACC 683228 37 100.0 33 ..................................... TCTGAATATGGGCACGATTTGTGTGTGAATACC 683158 37 100.0 36 ..................................... CGGTCTTACCAAAGGTGCCGTTAATCATAATCTTGC 683085 37 100.0 36 ..................................... ATATTTAAACCTCAGGTTCCAATTTGGCTCAGGTTT 683012 37 100.0 34 ..................................... AGGGGCAATCCCGCGACCGGTCCAAGTCTCCTCA 682941 37 100.0 34 ..................................... CTTTCAGAATGGTTTCTTTCTCGGCTTGCCAAAC 682870 37 100.0 35 ..................................... ATTTCTCGAATTTTGTCAGCCTTCGCGGTCTTTGC 682798 37 100.0 34 ..................................... ACCGTGTAGATGTATCCCACCGGCGATTTTTCGC 682727 37 100.0 34 ..................................... CACATCAATCAACCAATCGAGGAAAAGAAAATGG 682656 37 100.0 34 ..................................... GCTGCCGGCCTGCTGTATCTACCGCCCATCGCGT 682585 37 100.0 36 ..................................... CGCAAACATTTTCAGTAACGATTCCATTACATCGCC 682512 37 100.0 36 ..................................... TTTGGGGCCGGCGGTGGTGGTGGTGGTGGGGATACC 682439 37 100.0 34 ..................................... AGCAAATGCCGTCACGATTACGCCCATAGAAAAG 682368 37 100.0 36 ..................................... CGTCCTCCGCCGACATCAAGGAGGCCATCAAGGCGG 682295 37 100.0 35 ..................................... AGGCTCCAATTTCGCGAGCAGCTTTTGCAGCGGGT 682223 37 100.0 34 ..................................... CTCGCCGTGGTCGGCGAATCCGGAGCGGGCAAGA 682152 37 100.0 38 ..................................... CCCTTGCCGCCCTCCCTTGTGCCGCGGAACGTGACGCC 682077 37 100.0 34 ..................................... CGCTATATCCGCAAGGCCCTGTAAGGCGTGGCGG 682006 37 100.0 35 ..................................... ATCGCCATCGTGGGTGCCGTATGGATCACCGTGTC 681934 37 100.0 35 ..................................... TCGCCAAGGTGAGCAGCGCCGATGCCACGTTGACG 681862 37 100.0 33 ..................................... ACTAGAGAGGTAAACTATGTTCCACACCTTGAA 681792 37 100.0 35 ..................................... CTCGTCGGGGGCTTTGCCGTAGAAGGCGCGATAGG 681720 37 100.0 37 ..................................... CCTGGTCAGCCCTGAGGACATCGACAGGGCGCGGAAC 681646 37 100.0 36 ..................................... AGGAGTCGTGCGCGGAGCATGCGGATCATGCGGATC 681573 37 100.0 34 ..................................... AAGAAACAAGAGCTAGATGATGCCGAATGCGGCT 681502 37 100.0 34 ..................................... TCATCCGGCGGCCCATTGCCGAGCGCCTGGACTC 681431 37 100.0 34 ..................................... ATGATCCAGAGGAAAACCGGCTTCAGCGCCGAAT 681360 37 100.0 39 ..................................... GCGGCGTAGGCGGCGGTGTCGGCCGGACGCGCGAAGGAC 681284 37 100.0 34 ..................................... AACTTCCGCAATGGGTGATATGGCGCCGCCTAGG 681213 37 100.0 36 ..................................... AGTGAGGCTGTCAACCATGGTTGTAATTGTGGGCAA 681140 37 100.0 35 ..................................... CCGGCAGGCGCAGGCGAGATGATGCGTCACGCATT 681068 37 100.0 34 ..................................... TTCGGCGGAGTGACCAAGGTGGCGGAAGCCATGG 680997 37 100.0 34 ..................................... CTCGATCTGGAGCTGGCGCAGGGGCGGCACTGTC 680926 37 100.0 34 ..................................... CCTGCTGGAACCGGAGCGATCCGAACCTCCCCCG 680855 37 100.0 34 ..................................... CGGGAACCCATTGTACGCTTTTGCAAAAGCGTGT 680784 37 100.0 36 ..................................... AATGCGCCATCCCCCGCGGTGGCCGTGGACAACGCG 680711 37 100.0 37 ..................................... ATCGACCAGAACACCGGGATGCCCGTGCCCATGAAGG 680637 37 100.0 34 ..................................... CCAGCAGGTTCCGCCTTCGCGCGCCCGTCTCAGG 680566 37 100.0 34 ..................................... ATAATAAATTAAATTACCATTGGAATCGTATTCT 680495 37 100.0 36 ..................................... GTCTCCATCGGTGGTCAAAATGACACCGTGCTAGTG 680422 37 100.0 35 ..................................... AAATTGGCATGGATAAGATTGGCGCCGCGCAGATC 680350 37 100.0 36 ..................................... ATGATGATCATAATTGAAACTATTAGCAAAAAACTT 680277 37 100.0 34 ..................................... TATTAGCTTTGGCTATTTTTGCGGAATTAATCTG 680206 37 100.0 35 ..................................... CAGGCCGGCGGCGCGCCAGGCATGACCGCCGCCAT 680134 37 100.0 37 ..................................... ACACGGTCATGCTAAACCATGGTTGGACGACATTGCG 680060 37 100.0 34 ..................................... ATCGGTCGGCTCACCCATGCAGCTTGGCCTCACG 679989 37 94.6 0 .........................C...G....... | TC [679961] ========== ====== ====== ====== ===================================== ======================================= ================== 63 37 99.9 35 GTATCTCCCGGCTAAATAGCCGGGAGTGGATTGAAAC # Left flank : CTGGCAATTGAACCCATGGGCTTTTCGTCATGTTGATTTTGGTTTCCTACGATGTCTCCACCGAAACCGCCGCCGGCCGCAGACGTCTGCGCCATGTGGCCAAGGTATGTCTGAATTACGGCCAGCGCGTGCAGAAATCCGTGTTCGAATGCAAGGTCAACCTCGCCCAGATGGAAACACTCAAGGCAGAATTGCTGGATGAGATCGACGAGAAAGAGGACAGCCTGCGCATTTACCGCATCACCGAACCGCTGGAGAAAAACCTCATGGAGTTCGGCAAGTTCAAGGCGGTCGACTTTGAAGACACTCTCATCGTTTGAAATGCGCGAACCTCAAGCGATGCGAATTTGGCCGTGGGTTCGCGCAACTTCCAACTGGTTGAAAAACCAGTCGATAGCGGAGTCCTCCCCGATCCGCATCACGCCGGCGGACTGGCTCGACCACCCGTCCGCTCTTCCCTCGAAAAAAATCCTAGCTTATCATCAAGCTGCGGCAACGCC # Right flank : ACGGATACGCTTGCGAAACAGGAGGAAATGAATGATGCGGAATGCGGCTAGGGTCATTCCCGTGATTCTGATCTCGGCAGTCGCCCTGCACGGCTGCGCGATCGGATACCAATTCAACTACGCCGAAGCCGAGCCTACCATTCGGACGAACCCCAAGATCGTGGTGGCGGTCGGCTTCCAAGATCGACGCCCTGCGATCGTGAGCCAAAAGAAGCCTCCCGATTACGTGGGGGTTCTTCGGTCCTCGCTCGGCATCCCCTACAGTGTAACCACGGAGTCGGAGAGACCGATGGCGGATGACATGGCGACCGCCGTGGCGGGAGCGATCGAGCGGGACGGAGGCAAGGCGATCGCGCTATCCATTGCGCCGACTGCGTCGATGGCGGAAATCGTCCGCGATGCCAAGGTTAGAGGCGCAGGAACGTGCATGGTATTCACCCTGCGCGACTGGCAGACGGACACCTACATGAGCACGAATCTCGTCTACGACGTGGCGGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTAAATAGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.10,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 972243-971787 **** Predicted by CRISPRDetect 2.4 *** >NC_002977.6 Methylococcus capsulatus str. Bath, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 972242 28 100.0 33 ............................ CTGCCCTGGCGCACGCTCATATTCGGCGCGAGC 972181 28 100.0 33 ............................ TGTTGGCAGAAAGTCCGTTGACGTTCGGTGAGC 972120 28 100.0 33 ............................ TCGTCATGGCATGCGATCGGCCGGCCGCAACTT 972059 28 100.0 33 ............................ CGGATACCATCGCGCAGCTCATGCGGCAGTTGC 971998 28 100.0 33 ............................ GTGAGATAAGCGATTGAAGCGTAAGGAATTTTT 971937 28 100.0 33 ............................ GGCCGCGGATTTCCCGATGGCTGAGCAGATCGC 971876 28 100.0 33 ............................ CGGCTGGACCGTCTGCGGCTTCCGCCTCACCGG 971815 28 100.0 0 ............................ | A [971789] ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 33 GGCTCCCCCGCACACGCGGGGATAGACC # Left flank : CTTGCCACTGGCTTTCAGCGTCGCTAAGCGCGTGATGGACGATCCGTCTTTGCCATTGGAGAGGGCACTGCGCAAAGAAGCCGCCCGGCAGTTTCACAAGCAAAAAGTCATTCCGAAGATGATCGACCGCATCAAGGAGTTGCTGCATGTCGATGACGGTAATGGTGACGCGTAACGTCTCTCTCCGCATGCGCGGCTTTCTGGCATCCTCGATGCTTGAATTGGCCCCCGGTGTCTATAGCGCACCGCGCCTCTCGACTGCAGTCCGCGAGCGTATCTGGGCGGTGGTTGAGGATTGGTTCACTGCCGAGCAGGATGCCTCGGTCGTAATGGTTTGGGTCGATCCCGCAATGCCTGGCGGACAGAATGTCCGGACTCTCGGGCTGCCACCGGTTAAATTCGTTGAACTTGACGGAATAGTCCTGACTCGTCGACCTTAGGGTTTAGTGGATCTTTAACAGTCCGCTTTTTTGTTTTACCTCAAAGCGTTAGCCTATAGA # Right flank : CCGGCGGTGTCAAGGACGAAGTGCAATACCTGGTTCATTGAAGGAGCACAAGGAAGTCGAGCGAAGCGAGCGAGTGCGACGTCCCCGCGAAGCCATAGGCCCGGATGTTTTGCCGGAATCCGCGGCTTCATCGCGGGTGGAGACGAAACATAAGGGATCCGACAAGGCGACGAGTCATTGGGGGCGCCTTGTCGGAGTGCATCGCGGAGAGGCGGACGGAGCCGGGGCGGACGCAGGACGGCGCGGGCCGCCGAAGGCAAGGACGTCGCCAGTTTTTTGCTCCCGAGGGGGACGGGGATGTCCCGTCGGGTTTCGCAAAAAATGGCGACGCTCCAGCTGACCGAAAGAAGCCGATGAATACGAGAGCCTCCGGAGGAGGGACACTCCCGTCCCGACGTCTGTCGACTCAGATACGATCCCGGGTCATATGATGAGGATGCCTCTGCCCTTAACTTGCCTCCCGCGCGTTTCGATGATCCTTTCAGCGTCGGCCGGACGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //