Array 1 4072-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPD01000122.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold94_1_size13557-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 4071 30 100.0 37 .............................. ATGATTGGCTTGGGGTTGGTGGCTTTGTCGAACTCGG 4004 30 100.0 35 .............................. TCAAACTGAGGGTGAGCTTCAGCACGCCTCATAAA 3939 30 100.0 38 .............................. CTTGCAAAAGAAATAAACAGAATGATTGGCGTAGAATG 3871 30 100.0 39 .............................. AAGATAATGATTACAGGTGTGTACGATACGCAAAAGAGA 3802 30 100.0 35 .............................. AGTTCAACGATCTCTCCACATGAAGGACATTTATG 3737 30 100.0 36 .............................. TCGTATGACTGCCTTGAATACCGTTCAACGTCATCC 3671 30 100.0 37 .............................. AATTTCAGTCGGATTTGTTTTAGTATTTTTTCACATG 3604 30 100.0 35 .............................. TTGTTATTTTTTTAAGGGGGTCTTTCAACTTCATT 3539 30 100.0 35 .............................. TTTTTGTTGCACAGAATGAACAATATCCCTGGATG 3474 30 100.0 38 .............................. ATCGCCGCCAGGGTTTGCCCAGGAAGTATTTTTCTCTC 3406 30 100.0 38 .............................. AAATCTTCAAATTCCTCCCTCAAGCGGACGTACCGAAA 3338 30 100.0 36 .............................. ATAGAGTGAGAGGGTTGCCTTTTCGATTTTCGCGCC 3272 30 100.0 36 .............................. TCATTGAGAAAGTGGTTAAATCTGCCGGAACATCCG 3206 30 100.0 38 .............................. AATTGCCGAAATAGTGGAGGTAATCATTTCTTTGTTAT 3138 30 100.0 32 .............................. ATTGGAAAAATTAAACAGGAAATAGCAGAACG 3076 30 100.0 36 .............................. CTTAATAAGCCCCCTGCCTGCGTCCCCTCGTCCTTA 3010 30 100.0 35 .............................. ATTGAATACAACAACTGGATAAGTGCGGCTTACTC 2945 30 100.0 36 .............................. GTTTATCGCCTTTGATGAACTTACTCAATTTTCGGA 2879 30 100.0 36 .............................. GTTTTCTGGTATTCGGGGGTTTTCGGGTCAGTCTGG 2813 30 100.0 38 .............................. GAGAATACCGGATAGAAGATAATTCAATAACCGAGAAA 2745 30 100.0 37 .............................. TCTATCACGTAATAAGTTCCCGACTGCGTTTCTGAAA 2678 30 100.0 35 .............................. CTGACCTGGTCAGGGGATAGAACAACAAAAGCCTC 2613 30 100.0 35 .............................. CTTTGATACTGCTGCGCCCCTGACAAGCGTGTAAT 2548 30 100.0 38 .............................. TTGGATTAATAGGAGAAGGCGCACCAATCCAAGTACAA 2480 30 100.0 36 .............................. TCCATAATACCAAAAAGTACATTATTTGACATTGAA 2414 30 100.0 39 .............................. ACAAAAGCATATAAAGCAGCTCATTTTGCTGCTTTTAAT 2345 30 100.0 46 .............................. ACATAATTGTAATGCTAGAATCTGTGACAAAGATTGTATACGGCTT 2269 30 100.0 40 .............................. TAAGTTTTTTATAATACTCAAGTGCGTAATCACAAATACA 2199 30 100.0 34 .............................. ATATACTAGACCCCTATATGCATACCAAACGCGG 2135 30 100.0 36 .............................. TTATATTGTGATTTACCAGATACCCAAGGGGACCGT 2069 30 100.0 36 .............................. CATTTAAAACTCATTGTTTTGGCTCCTTTGAACTTT 2003 30 100.0 36 .............................. TTTAATTGGTACGCTAAACAGGCGGACGTTGGAAAC 1937 30 100.0 36 .............................. GGTCCTCCGCGTTGAATCTTTGCGGGAATAGAGGTT 1871 30 100.0 36 .............................. AACAGCACCCCGTACCCTCTGCAATTATCGAATACG 1805 30 100.0 36 .............................. CTTGCAGGTACTAGAGCGGGGTTGATCGGGGTGAAG 1739 30 100.0 35 .............................. TAGTTATTCCACGCGCGGGCATCTGAGCCGCCGTC 1674 30 100.0 37 .............................. GTAGCTGATTCCTTCGAGATTACTGCCGATTTTGAAA 1607 30 100.0 38 .............................. TTTCTTCGGGTCATACTGCTTCATTGGTTCGGTCTGAC 1539 30 100.0 34 .............................. TGATCACATCATCTTCATTGAAAAATCCTTCATA 1475 30 100.0 36 .............................. GTTGTTCGCTTCGGGAGCAGTTGCAGCCGTCCAGCT 1409 30 100.0 37 .............................. TCAGGATATATAAGTATTATTTTTCCGTCCTCATTAC 1342 30 100.0 36 .............................. GTGATAGATTTCTATCTGTTTCGATTCTTGGATACT 1276 30 100.0 37 .............................. ACTATCCAGATCCCAGGACCCCAGGTTGAGACAATGT 1209 30 100.0 35 .............................. GTTCCGGCTGAAGCAATGCCCACCGAAAAAAGGAA 1144 30 100.0 35 .............................. TCTTCTTCTTCAGGGTCTTCGGCTGAAATGAGAGG 1079 30 100.0 36 .............................. TTGTCATGCTATAACCTCCTGAGCATAAGCTCCCTT 1013 30 100.0 39 .............................. GTCCGAGTGGATTGATCTGGGCCTCGTAGTTATCCAATC 944 30 100.0 38 .............................. TGTGCTTTCTGTTGGAATTTCGGTGACATTTTCAGGGA 876 30 100.0 35 .............................. TAGAACAAATGGCAGCCCCCGCAACACTTAACCCG 811 30 100.0 36 .............................. CTAAGAAAAGAATACTCCGTCAGTGTTTTGAAAAGG 745 30 100.0 36 .............................. ATCGGTGATTTCTTCTATAGCCTGAGAGTAGAGTTT 679 30 100.0 38 .............................. TCCTTTGCGACAAAAGGTTTAGTCAGACTTATTTCAAA 611 30 100.0 36 .............................. GAGAAAATGTTTCCTCGAGCCTCAACCGCGTATTTG 545 30 100.0 35 .............................. CTAATATCTCAATTCGTGGTTGCCATATCCATGAC 480 30 100.0 36 .............................. GGATCTTTCTCCGTGAGTGCCGGGTTGTCCTCCAGG 414 30 100.0 34 .............................. TGACCTGAATTCTCCCTGAATTAACTTTAATATC 350 30 100.0 36 .............................. CTTTAAATCCGGTAAAGGCCCGATGTGGCAGGCCGG 284 30 100.0 37 .............................. TCCTTTGTACCTATGATAACGGATTAAACCGCCACAT 217 30 100.0 37 .............................. AAATTCAGAAGCCAGGGTTACTGTTGGAGTCAAGAAA 150 30 100.0 36 .............................. CTAAAAACTCCTCTTCTGACATCACCTCTCTTATTT 84 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 61 30 100.0 36 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : TATGAACTGGGTCCAAAATAGTGTTTTTGAAGGCGAACTCACAAGAGCCGAATTCGCAAAAGTTAAATCAAGGCTTAAAGAACTCATTGAAGAAAAATCTGATCACATCATTTTCTACAGCTCAAGAGATCGGAAATATCTTGGAATAGAAAATCTCGGAACCCCAAAAGCAGATACAAGCAATATCATTTAATTGCCTCGTCCATGAGTTTCATTACTTAGATCTTCATACTAGAATTAACACTTAATTTATATATTTCTCCCGTCTGCCTTTTTTGCAGTTCCTGTTTCTCCTCTTTTTTCGTGGATCTTTATATATGAACCTCCTGAAGCACGATCCCCGAAATCAGCTCTTAAAACCCTCTTAAAAAAAGAATGCTTTTATATCAACAGTGAACAAATACCATTGAATAAAAACAGTATCATTCCCCCGAATTATTTATCACCCATCTGACAGGATCAGGCATCCAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : CTGACCTGAATTCTCCCTGAATTAACTTTAATATCGTTAAAATCAGACCTTAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 5157-9065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPD01000191.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold130_1_size9136-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5157 37 100.0 36 ..................................... TACTCTGTAAAAATCCCCCCTTTTGGAGCGAAAGCC 5230 37 100.0 36 ..................................... TAATCTATCGAAAATGAGGTTTTCCATGAATCTGGT 5303 37 100.0 36 ..................................... ATAAAGGTAACAATTGGGGGATTTACTTAGAGCTGT 5376 37 100.0 36 ..................................... AATTGTTTCTCAGCGCATTCCCGCGCTTTTCTGATA 5449 37 100.0 35 ..................................... TTCATTGTTAATTCTCCCGCGCAGGATCATATCAG 5521 37 100.0 35 ..................................... TCCCCCCATAAGAATTTCTTAGTTTCAGGAAATTC 5593 37 100.0 38 ..................................... TGACCGAGTAGTGTACGAGTATTTGTAAAAAAAATATG 5668 37 100.0 36 ..................................... CCAAGCCTGATTATGAGGTAAACTGGCATCACCGGC 5741 37 100.0 39 ..................................... ATAGATGCGGATCGAAGTCTTCTACTTTTATTACTTTCG 5817 37 100.0 35 ..................................... TTTGCAGGCTGATAATAGTGGCGGTGCAAGTATGC 5889 37 100.0 38 ..................................... ATCAGAAAACGCTTTTATTACGCGGGTTTTCAGATCGT 5964 37 100.0 37 ..................................... CTCGGCTTTCACTCGGGCGCAAAAATACCCCTATATG 6038 37 100.0 35 ..................................... CCGGGAATGTGACGGTCAGGGAATACGGCATTTTC 6110 37 100.0 38 ..................................... ATGACGATCGAGAAGTAATGCTTACTATTCCTGAACAG 6185 37 100.0 35 ..................................... TTGAGAAAAGTGAGTTGATTAAGGTATTATCAAAT 6257 37 100.0 36 ..................................... TGCCGTCCTTTTTCGGGACAATATGAACAACGTGGT 6330 37 100.0 37 ..................................... ACACACGAAAATGTTGTGCCGATTGATAATCCCTGCT 6404 37 100.0 33 ..................................... AGATCGCTGCCTGTTCAAAATCATCGAGATCAT 6474 37 100.0 35 ..................................... CTTATTAAATTGAGGAGAATTACCACTACTGTACC 6546 37 100.0 37 ..................................... ATGTGCATGTTCGGGCTTGCTTTTCATGCTAATATAC 6620 37 100.0 37 ..................................... ATAAGGTATGCAGCAAAGTCGTATTCTGTTTTTGAGA 6694 37 100.0 38 ..................................... TTCCACGACCTGCCGGAGGGTATCGGAACCCGGTTTGA 6769 37 100.0 37 ..................................... GGAATTTTCAAAAGCTCATCTATATTCGTGAATCCCG 6843 37 100.0 34 ..................................... GCAAGTGTAAAAAGGGAGTGGCTAATCAGTTTCG 6914 37 100.0 36 ..................................... TACCACCAGTTTCAACATTTTGGTTCGAACCGCAAA 6987 37 100.0 35 ..................................... CTATACGGATATCATCAAATGACGCAGGAGAAATA 7059 37 100.0 36 ..................................... CCCGGAAGGCTCCCTGCATGACCACAGGGACGATGA 7132 37 100.0 34 ..................................... CATCCACGAAAGAAGCTTCAGAAGGTACGTATCA 7203 37 100.0 36 ..................................... CTGTCGATATATACGGGAAAAAAACGGCTACCACTA 7276 37 100.0 35 ..................................... AGCTTATATTCCTCGTATTCACATCCCCATTTCTC 7348 37 100.0 36 ..................................... CATGAGGGAAGCGGACGAGGTTAAATATCTGAATGG 7421 37 97.3 34 ..................C.................. TTAAAGCTGACCATGCATTATCAAGTTCTGTTTG 7492 37 97.3 38 ..................C.................. GAAAATTGTTTTCATACTTCCTAACTGATTCTTAATCT 7567 37 97.3 36 ..................C.................. CTAGTATAAAAAAGTTTTGAGTAGAGAAGACTTAAT 7640 37 97.3 37 ..................C.................. ATTTCTCCACCCTGTAACGTTGTTGCACCTGCAAATT 7714 37 97.3 37 ..................C.................. ATGTCTTAAATCGCCTTAGATTTGTTCGTACTTATTA 7788 37 97.3 34 ..................C.................. TTAAAGCTGACCATGCATTATCAAGTTCTGTTTG 7859 37 97.3 38 ..................C.................. GAAAATTGTTTTCATACTTCCTAACTGATTCTTAATCT 7934 37 97.3 35 ..................C.................. ACCTCATTGCAGATAAATGATTTAGCCCTGTAGAG 8006 37 97.3 37 ..................C.................. GGGTATGAAATTGACCAGGAAATCCACAATGTTGTTG 8080 37 97.3 38 ..................C.................. TTTATAGAATTACATACATAAGTGAGTGTAGCGAACGT 8155 37 97.3 35 ..................C.................. TAACAGTCCTCTATCTGGTTGTTTTCAAAAATCGT 8227 37 97.3 36 ..................C.................. TAAAAAATACACTCGAATGCATCAAATTATACTGAG 8300 37 97.3 36 ..................C.................. TGGTGGAAAGGAAGTTGCAAAAAAACTTGGAATTGG 8373 37 97.3 36 ..................C.................. GCTACGATTTCACTATACAATTCCTCTACAGTCTGC 8446 37 97.3 33 ..................C.................. TTATGATGAGTGTGAGACAAAAACGGATACTGC 8516 37 94.6 35 .....C............C.................. ATTTATTACTTCCCATTCCTCAGAAAACAGTTCAA 8588 37 94.6 38 .....C............C.................. TAAACCAGTCCCGCGATTACAAGCATCGAAATGATACA 8663 37 94.6 36 .....C............C.................. CGAAGTTAAATGATGGTGGGTTGAAGTTTGACGGTG 8736 37 94.6 37 .....C............C.................. TCCATATGCCCCATCTGTGCGCATATAATCGCATATT 8810 37 94.6 34 .....C............C.................. CTACACTCTGTGCGTTTGCGCTTGTTAAATTCGC 8881 37 94.6 37 .....C............C.................. AGATACGCTGCCCAAGAAGCCCCACCTGCCCCTGCAG 8955 37 94.6 37 .....C............C.................. AAATCTATACTAACCCAGCCACACTTTAGCCCTGCAG 9029 37 94.6 0 .....C............C.................. | ========== ====== ====== ====== ===================================== ======================================= ================== 54 37 98.5 36 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : GGAGAGGAATTGCAGGGATGAGGGATAAACTGATCCACAACTATTTCGGTGTGGATTCCAGTGCTGTATGGGATACCGTAAAAGAGGATATTCCTTCTCTCAAAGAAGAAATCATTAAAATTATTCAGGACCTTAATGAGAACGTTTAGTTTTTTTAATTTTGTCAACCGATCTATTATTATGAGTACAAGAAAAACATTCGTGAAGTTCCGGAATATTGCCCCTCTTTCTGATCCTGCCCAGGGGCGGAAAATCCCTCCTCGCTCCCAATATAAAACCATATTTCACGGTAGATCTGAAAAAGAGTATGTACAAATATACAAATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCCATATGTTTCTAAATTACTAAAAACCCTGTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTCCCAGCAAGAATTTTAGCCTCGAAAAAGGGCACATTTCCGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : AAATCTATACTAACCCAGCCACACTTTAGCCCTG # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 3880-63 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPD01000126.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold161_1_size3967-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3879 37 100.0 37 ..................................... TAAGCTACTATTTTACCTTGTCTGACTAAATCTGCAT 3805 37 100.0 35 ..................................... TTCAATGATCTCTACTTTTGCCGGGAAAGATTCGT 3733 37 100.0 36 ..................................... AAAAGCGACTTGCATATACTACAGAGCCGGTTCCGG 3660 37 100.0 36 ..................................... TAATTTCATCATGCCCACAGGTTGCAATGGTGTCAA 3587 37 100.0 35 ..................................... TGGCCTCGATCTCTGCTGTAGACCCCTTTTCCTCT 3515 37 100.0 38 ..................................... TAACCGGCATACAGAGCCATTATTAATTGTACCAAAAA 3440 37 100.0 33 ..................................... CAGGGGCGAATTCGTCTTTTACCGTCGGGACAA 3370 37 100.0 36 ..................................... TGCAAGTAAATTACGGTGGAAGTGTTGCAGTTTCTA 3297 37 100.0 34 ..................................... TGACTGAGAGACAGAGGAACGAAATTAGAAAAAG 3226 37 100.0 35 ..................................... GGATTTATCAAGGCGTTAACAGATACAATATCCAT 3154 37 100.0 37 ..................................... TTAATTTCGCGTATATCGTCTATAAAACTTTTCACAT 3080 37 100.0 37 ..................................... AAGGTTTATCTTTTTCCTCAATGTTTCAAAATGTTTT 3006 37 100.0 37 ..................................... TCCTTGGCTACTTCAAATTCAGTTTGTAGTTTATTAA 2932 37 100.0 37 ..................................... AAAACGTTATCCCACTTTTCTTTGGTGATTCCATAGG 2858 37 100.0 38 ..................................... TCAATCACACATTCTTTAAAGTCTTCTATCGTAACTTT 2783 37 100.0 36 ..................................... TAAAGTTAGATGTACGTGGCGCATAAGATACACTTC 2710 37 100.0 36 ..................................... GTTTTATAGTTGTTACTACTATAATAATCACCTCTA 2637 37 100.0 38 ..................................... TTCATTCCTCGAAGCTACAAACACAACAAATCTAAATT 2562 37 100.0 36 ..................................... CCTCGCTCTTGCCGGATGGGACGTAAATGAAATCAT 2489 37 100.0 37 ..................................... AAAACTCCTGCTTCAATCTGTTCGGGGGTTGCTACGT 2415 37 100.0 38 ..................................... CCTCGTTTCTTTTTTTTGAAAATCCCAGATTATGACGT 2340 37 100.0 34 ..................................... TTCTCAGGGAGCGCGGAGGCACAGCGAGAAGACC 2269 37 100.0 34 ..................................... TTAAGAAGTCTGAACCTGTGGAGCAGTTGAAAAA 2198 37 100.0 33 ..................................... AAATTGGCGATTTCTTTAGAGTTAAAGGTAAGA 2128 37 100.0 37 ..................................... ACATAGTCATACATGCTGTCATAGAGGTTCACGTATC 2054 37 100.0 34 ..................................... TAGCTATCTTAGCTATCTTTTCGGCTCGTTGGAA 1983 37 100.0 36 ..................................... CATTCAACGATATTTACAAGCCTAGTGTAATCCCCT 1910 37 100.0 35 ..................................... AACCTTCTACAAGATAATCCAGCCACATTTTTTTA 1838 37 100.0 34 ..................................... CCACCTTGTAGGTAATAATCTTTCCGATTACTAC 1767 37 100.0 35 ..................................... TTCCAAGAGCCGTGTAACTGCATGTTGCGGCTTTC 1695 37 100.0 33 ..................................... TCCCTCCTTAAGTTGTCACCGTTCCGAGTCCAA 1625 37 100.0 36 ..................................... TTAAAAAAATGTTCTTTCTTGCAAATCCGGTTAACT 1552 37 100.0 37 ..................................... GTTCTCCTGATTCGTTATCTATGCGATGTAATACACA 1478 37 100.0 37 ..................................... TTATGGTGATCCAGAGAAGGATATTCCGGCGAAAGAG 1404 37 100.0 36 ..................................... TATTCATGCTTCAACTTCCTGCGTTCCCTTGCTCCA 1331 37 100.0 36 ..................................... ACCCTGGGTCTTCTGAATGGTACTGGACAGGTTCAG 1258 37 100.0 36 ..................................... GCATCATCGTTTCCGGACCCGAGAGATATGATATCC 1185 37 100.0 36 ..................................... TTCACCATATTTGATAAAAATACGTTAGTATGTTAA 1112 37 100.0 37 ..................................... ATGCCAGTGTTGCAGCTTCCGTGCGGGTTTGTGTTGA 1038 37 100.0 36 ..................................... AAACACAATTGAAGTTATTCCTATCGCTATATTCTA 965 37 100.0 37 ..................................... CAGGAAAAGGTATCCGAAATACAGGTATTACAGGTAG 891 37 100.0 33 ..................................... CATAACAAATTCGATATTCATCTCTCGATACTT 821 37 100.0 34 ..................................... TGATAGGCATATAATTGATGTTTTGATAGAAAAG 750 37 100.0 34 ..................................... TATAGAATTGTAATTGCAACAGACGATGAAACAC 679 37 100.0 37 ..................................... TCCGTTATTGCCTCGTTTTTACCAATTATCCCTTTTA 605 37 100.0 36 ..................................... AGATCGTACTGTAACTGCTTTACCAAATCGTCAAGG 532 37 100.0 34 ..................................... AATTACCTATATTTCCACTCCAAAATCTGGTCTA 461 37 97.3 35 .....T............................... AAGTGGATACATGCCCCACATGACCCCATTGAACC 389 37 97.3 34 .....T............................... TTTCGACTTCCCATCTCCTGCTCCTGATGTCAAA 318 37 97.3 36 .....T............................... CGGGACTCTGAGGTGATCAAGAATGACAAATGCACT 245 37 97.3 36 .....T............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 172 37 81.1 34 GG...A..AGT..C....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA T [157] 100 37 81.1 0 .G...A..AGT..C......................G | T [84] ========== ====== ====== ====== ===================================== ====================================== ================== 53 37 99.1 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GACGGCATACGAGATGTAGAGAGGTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGATACTAACCCAGCCACACTTTAGCCCTGCA # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 45-9024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPD01000037.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold62_1_size23258-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 45 37 100.0 35 ..................................... AGAAAGTAAAATGCTTATCCAGCCGTACCTGAATA 117 37 100.0 34 ..................................... CAGCCGGATACACTGTTACAGGCTCCGTTTCCGA 188 37 100.0 34 ..................................... TTACGCCCTGGGAGATTTCGTATTTATCAACTAC 259 37 100.0 35 ..................................... TATACTGCATCCGAAACAATGTTAATAAGAATTGA 331 37 100.0 35 ..................................... TTCCAAGATCCAAAACTAGACCCGGCTGATACCGG 403 37 100.0 36 ..................................... TTTTATACCCTGGAAATGGGCTGATCTACTACGGGC 476 37 100.0 34 ..................................... CACTGTTGGAAGAACTTGTCAAACAAGGAATTCT 547 37 100.0 37 ..................................... TTAACACCGTACCGCTCAGCCCTGAAGTTCAGGTCAG 621 37 100.0 35 ..................................... GTGATTGCTGTAACTGAGGGGAACCACACTGTTGC 693 37 100.0 38 ..................................... CAAACTCTTCAGAGCCATCAGGATAGATTCTAAGCACT 768 37 100.0 37 ..................................... CATATATGCATTCCTAACCCATGCCATAACAAAAACT 842 37 100.0 35 ..................................... TGGCTTTTGCGCTCGTTGGAGGAACTACCCAACCT 914 37 100.0 38 ..................................... TCCAGACCGGTTGAGACATAGGGGTGGCAGACGGAAAG 989 37 100.0 41 ..................................... TTGAGTATGTTAAGGGCTGCTGTTCTTACGTTGTTGAACTG 1067 37 100.0 39 ..................................... TTTATCAGACTTGCGACCCGGCGACCTCCACAAAATCCA 1143 37 100.0 35 ..................................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGA 1215 37 100.0 36 ..................................... TTTAGTACTGTTCTGCCTTCCGTTTGTGTTCATTTG 1288 37 100.0 35 ..................................... TCAATAAAATTATCTTGTCCTCTGTGACCTCTCCT 1360 37 100.0 36 ..................................... AAAATATCAGTATTGTTAGTACCCTTCCTATAGGGT 1433 37 100.0 38 ..................................... ATACAGGCTTGTTAGAATTACTCAGGTTTGACTTATTT 1508 37 100.0 35 ..................................... GCCGTGACTTCGATAAGCTTCTCATAAATTGCGGC 1580 37 100.0 35 ..................................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGAAT 1652 37 100.0 34 ..................................... GCGTCTGTTGTATTTTCATTTGCAAATGTGACGG 1723 37 100.0 35 ..................................... CGGTCCAATTTGGATCAGGAACCGAAACTCTAATC 1795 37 100.0 37 ..................................... ACCCGTTGTTAGTCTGATACTACATGGACATTTAGGC 1869 37 100.0 35 ..................................... ACAGATTAACATATTCAGATTCAAGAGCATCAACT 1941 37 100.0 37 ..................................... TGGACAGGGAGCGGGTTTTTTGCAGGGAGGTTGTAAT 2015 37 100.0 34 ..................................... TGTGCAGACGGGATAATCTGAAGACGCTCATCAT 2086 37 100.0 35 ..................................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 2158 37 100.0 36 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAAC 2231 37 100.0 36 ..................................... ACACTCGCGAGCAGGGAATATCCATTCCCTAGATCC 2304 37 100.0 36 ..................................... GAATTTTCAGGACTCACTTTCGATGGAAATTACAAT 2377 37 100.0 36 ..................................... CCTAATAAGTTCCAAGCTTTATCAAGTCTGTTTCTG 2450 37 100.0 37 ..................................... CATCCTGTGAATTCAGGAAGCAGTCTTGAAGCAAGAA 2524 37 100.0 35 ..................................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTG 2596 37 100.0 35 ..................................... ACACTTACTTCAAGCAGTGCCGACACTTCCGCGAA 2668 37 100.0 33 ..................................... GCCCCGATCTCCTGAAGAAGAGGCTGGATATTT 2738 37 100.0 35 ..................................... CTTCGTGATACCGTTTCCCCATCAAAAAAGAATTA 2810 37 100.0 34 ..................................... TGCGATTCCACAGACTCAGTGAAACCCATGTCAA 2881 37 100.0 38 ..................................... ATTATACCCCCCATATATACACGCGTATTATCAGAATT 2956 37 100.0 36 ..................................... TCAAATCAGAGCATTATAAACAGTGAAAATAATAAT 3029 37 100.0 34 ..................................... AATACTTCTGCTGAAAAACATGTTATTTTTTGAG 3100 37 100.0 37 ..................................... TTGAGTCGATATCTTCCCAAAATGTCTTTCCATTGTT 3174 37 100.0 35 ..................................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGACA 3246 37 100.0 37 ..................................... TCTATTATTTCCTCTTGCATCATTCCACCCCTAACAC 3320 37 100.0 35 ..................................... CTATTACAGAATCTCCTTTTGGCGGGCTGAAAGGT 3392 37 100.0 36 ..................................... TATAGCACGGGTATCGGCAACAACTAAACTCTGTAA 3465 37 100.0 35 ..................................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTTA 3537 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 3609 37 100.0 36 ..................................... TCTCTGCTTCGTTCTTTTCATATGCTTTTTCTGCTT 3682 37 100.0 35 ..................................... ACGCATTGTGTTAGCATCACAGACTTAAAATTATC 3754 37 100.0 35 ..................................... CAGTTAATTTTTCATTATTGATTCAATGAACAGGA 3826 37 100.0 35 ..................................... ATGATACGTGGGTTCAGTGCATGGTAATCGGCAGG 3898 37 100.0 35 ..................................... GGAGTCTGGCATCTATCCACTTCTCAGATGTTCTC 3970 37 100.0 35 ..................................... CTCGGTAACAATATCAAAAACGCTATCAGTGATGT 4042 37 100.0 34 ..................................... CTTATATATGAATTCGGTTTTAACCTTCGTTTCC 4113 37 100.0 34 ..................................... CATTAGCTTTTCAATTAACTTCTCATTTGCCTTA 4184 37 100.0 34 ..................................... ATTCAAGAAGCTCTTTTTTCATGGTTTGGATTGA 4255 37 100.0 37 ..................................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 4329 37 97.3 35 .....A............................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 4401 37 97.3 34 .....A............................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 4472 37 97.3 36 .....A............................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 4545 37 97.3 35 .....A............................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 4617 37 97.3 35 .....A............................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 4689 37 97.3 35 .....A............................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 4761 37 97.3 34 .....A............................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 4832 37 97.3 37 .....A............................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 4906 37 97.3 35 .....A............................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 4978 37 97.3 38 .....A............................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 5053 37 97.3 37 .....A............................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 5127 37 97.3 33 .....A............................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 5197 37 97.3 35 .....A............................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 5269 37 97.3 35 .....A............................... AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 5341 37 97.3 35 .....A............................... ACAATACAATTACTCATTCTCCAGTTTGATCCATA 5413 37 97.3 35 .....A............................... TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 5485 37 97.3 34 .....A............................... TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 5556 37 97.3 36 .....A............................... ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 5629 37 97.3 36 .....A............................... CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 5702 37 97.3 35 .....A............................... CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 5774 37 97.3 35 .....A............................... CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 5846 37 97.3 34 .....A............................... AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 5917 37 97.3 35 .....A............................... TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 5989 37 97.3 32 .....A............................... TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 6058 37 97.3 34 .....A............................... TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 6129 37 97.3 35 .....A............................... CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 6201 37 97.3 37 .....A............................... CTCATCAAATCTGTTGGAGCTTGTGCCCGCTTCGCTC 6275 37 97.3 36 .....A............................... CACTGTTGCAGAAGGCGGAGCAAGCGACATTGTAGC 6348 37 97.3 34 .....A............................... TACGTTGTAGTGTTTGCAACCTCATTACCATCAA 6419 37 97.3 36 .....A............................... ATACTAATACGCTTTTTAGATATAAAAAGGTATCTA 6492 37 97.3 32 .....A............................... CGTTTCCTTCTTTGAGGATGCAGGTCATTTTT 6561 37 97.3 35 .....A............................... AAATCTTTTTTATCGCTTATCTGTTTCCAGTGATA 6633 37 97.3 34 .....A............................... TAGTTACATTCCATCAACAAAAAGAGCCTTACAG 6704 37 97.3 34 .....A............................... CTGTCTAGGCTGCCCGTATCTATTTCGATTCCGG 6775 37 97.3 34 .....C............................... TTAGTAGATACTTAGCTAAGTAAATGTATAAATA 6846 37 100.0 35 ..................................... CTTATGTTCTGTGCTCTTAAAATAGTGCGCGAAAA 6918 37 100.0 37 ..................................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 6992 37 100.0 33 ..................................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 7062 37 100.0 35 ..................................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 7134 37 97.3 34 .....A............................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 7205 37 97.3 36 .....A............................... TTTGAGAGTGTGCAATATTTGAATTGTTCTTTTTTT 7278 37 97.3 35 .....A............................... AAAATACAAGTAAAGTAAGCCACACAATCCCTCTC 7350 37 97.3 35 .....A............................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 7422 37 97.3 34 .....A............................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 7493 37 97.3 36 .....A............................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 7566 37 97.3 35 .....A............................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 7638 37 97.3 36 .....A............................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 7711 37 97.3 34 .....A............................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 7782 37 97.3 36 .....A............................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 7855 37 97.3 34 .....A............................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 7926 37 97.3 37 .....A............................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 8000 37 97.3 35 .....A............................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 8072 37 97.3 34 .....A............................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 8143 37 97.3 43 .....A............................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 8223 37 97.3 32 .....A............................... TTATCAGCGTGGATATAATACTTATATTTCTT 8292 37 97.3 37 .....A............................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 8366 37 97.3 36 .....A............................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 8439 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 8514 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 8589 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 8660 37 91.9 71 .....A.............................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 8768 37 81.1 35 TG...A...T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [8773] 8841 37 83.8 34 .G...A...T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [8848] 8913 37 81.1 36 GG...A...T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [8918] 8987 37 78.4 0 TG...A...T.GCT......................G | A [8992] ========== ====== ====== ====== ===================================== ======================================================================= ================== 124 37 98.1 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GATTGAAACCTTCTCGATCGTCATTAAAGGGATCTTCGCAAATGA # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 18160-18488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPD01000037.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold62_1_size23258-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 18160 37 59.5 36 TGGTCTCC.TCTTTA.A.................... TTAAGATGACCAGCGATCACAGTTTTCGTCTCTGCC 18233 37 78.4 35 .G..G...GT.GCT.....G................. CTATTTCCCTATACCTTTCTCACTCAAAACCATTA G [18242] 18306 37 100.0 35 ..................................... TCAGAAAGTTCCTGCATCGAGTCTACCCATGCATT 18378 37 86.5 37 ....GC..G...................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 18452 37 81.1 0 ....G.T.A.........T........A.....T..T | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 81.1 36 ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATAGGTCAAACAATTAGAGCAATAAGATATCATTTAGGTGAGTTAGAAGCATGTTGGTTACTGTGTACAAGAGAAACAAAAGAGAGTGAAGAGCTAATAAATTACTTTATAAGAAAATTCTCTAAGAAAACGGTAGACATCCAATCAATCGAATTAATAAATTCTTCAAAAATTGGTGATACTTTTAAACAAATAAATGAGATATATATAGAAAAAATAAAAGGAGTTGGTTTAAAAGAAGGAGAGGTCATAGCAGATTTGACAGGAGGAACCGCGGTTACGAGCTGTGCGATGGTTCTTGCCTGTGTACCTATAAAAAGAGACATGGAATATGTTCTTCAAAGTACATATGATCTAATAAAAATAAAAGAAAATATCTCTGAAATAGTATTTGATAGATAATTGTTAAACAGTTAAGTTCGAAGTTGCTTAGAATTGGCTAAAAATAAGAAAGATAACTCTTTAAGAAATAGTTGCCACGAAATAAATAGTGAGATGCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.05, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAGATCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 12159-11872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPD01000027.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold107_1_size12210-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================ ================== 12158 30 100.0 34 .............................. ATTGAACTATTACGGCATTTTGAAGGACAGGAGG 12094 30 100.0 36 .............................. AGGAATACACCGGATAAACTGCCTGCAATGAATACA 12028 30 100.0 96 .............................. GTGCTTAGGAAAACCCTTGTATATAAACATCTTTAAATTTGTGGGAGAAAAATTAATAAAAGGAAATTAAAAAGTTATATACTATTAGAAAAATGT 11902 30 80.0 0 AA..G.....CT.................A | T [11896] ========== ====== ====== ====== ============================== ================================================================================================ ================== 4 30 95.0 56 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : CCTTAGAGGGATTGAAACATTGAACTATTACGGCATTTTGAAGGACAGGAG # Right flank : TTTGGAGTTCGTAATTTCAATTTATTAATAAGACCTTTTAGGGATCATTTATTTTTTTTACATTTTATTTGGGAAATAATGACTTACCGTTTGGAGTTCGCAATTAGGAAAGATTTATCTATTTGAAATGCTTTATACTCTATAACTCATTAAGAAAAACGGGAAATGTAAATACAAAATTTAAATAATAGTCAGGGAACAAGTTATGGATCAAACAAATCCCGTTGAATTGACATTATTGTTTTTGAGAATACTGGAATTTCTGCAACAAAAAGCCTATATCCGAAAGACGGACAAAAAAACAATCCTTGGTAATGGAAAGAAAGTTATCTGGAGGTTAAATATTGATATATCAGTATACAGGGAACCCGTTCGTCGATAATGGTATGTGGGCAATTTGCGAATGGGCAGAAAAGAAAGACCCAAAGGAACTTGGAATTGAGGACATAAAGGAAAGTATTTCCGATATTATTCCAATTTATTTAACAGAATCTTGGGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-2.39, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 314-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPD01000159.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold17_1_size46583-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 313 37 100.0 36 ..................................... AGAGTACATTTTCTAACGTTCTCACCTTTGAGAATC 240 37 100.0 37 ..................................... ACACTATAAAATCAGCCGGAACGAAAGCTAAAGTATC 166 37 100.0 35 ..................................... CAAAGTCCCCCGTAGGATGTACGAATCTTGGAAAG 94 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : CCTGTCTCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //