Array 1 184896-186386 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPQ01000002.1 Streptococcus cristatus strain A54 D8794_contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 184896 32 100.0 34 ................................ ATGGGAGAGACTAGGTTTATTGAAAATCCAGAAG 184962 32 100.0 36 ................................ TTTGCCAAGCGCTTTTCCTTGTCTCTGGACATTCCT 185030 32 100.0 34 ................................ AATCATCATTGCGAATAACGGAAGTACCGTGACG 185096 32 100.0 34 ................................ TAATTTATGGGACGGCATTAAATCAGCCTTTACT 185162 32 100.0 34 ................................ AAAATGAGAAACAATATCAGAAATCTCAAAAACA 185228 32 100.0 34 ................................ CGATATCACCCAAAGTATCAACAATGAGCGCTTT 185294 32 100.0 34 ................................ AGTAAACTGTGGGACGGCATGAAGAAGCTAGCTC 185360 32 100.0 36 ................................ ATGCCATCGCTCCACCCCACAGTAGAAACCCCTGTC 185428 32 100.0 34 ................................ ATACTTTTTGTGACATGGGTGTAGATTTGCATGG 185494 32 100.0 34 ................................ GCGTTATCAGCGATTGTCTTGAATGATGCAGCAA 185560 32 100.0 36 ................................ ACAATCTTCATTATGAAAAACTAAAGCATTCATCTT 185628 32 100.0 33 ................................ AAAAGCTGCCAGCCAAAAATAGCCTGCAGCAAA 185693 32 100.0 35 ................................ AAGCATACTGTCCGCTATGTTTGGGGGAATAAGAC 185760 32 100.0 34 ................................ TCAGTTGCTCTCGGTGTCGCCGTCTGCGCCTTTC 185826 32 100.0 35 ................................ TTAGGTTCATCATAGCCTAGGGCTCGCTGGCTATC 185893 32 100.0 34 ................................ ACCAGCACCAGCAGATACTGTACCGTGTGTTGTC 185959 32 100.0 34 ................................ ATACAGCGTTTGGAACTTCTAAAATAGAGGTGTC 186025 32 100.0 33 ................................ ATCAATCGCATTTTGAATAGATTCTGGTAAATC 186090 32 100.0 34 ................................ AGATAAATAATTGTGTGTGTGTCACCGCCAGCGA 186156 32 100.0 34 ................................ AATGAGTGATTGAAAAGTAAATACGATGTACCCG 186222 32 100.0 37 ................................ AAAAATTAGGATGCAGATACGTCTCTGGACCCTGAAG 186291 32 87.5 33 A......T......A..A.............. GGATAAACTGATAAAGTTTATTTGATTTTTTAA 186356 31 84.4 0 .......T........A..........-..GC | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 98.8 34 GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Left flank : CCAAGACAATTCGTGGAGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCCGGTTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGCAGGAAAAGGTTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAAGCTAAGCTTTTGAGTATAATTGACACTGAGTCCGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTCTAGAAACGATTGGACGTGATACAAGTTATGATCCTGATATAGGGGTATTACTCCTTTAAATAGTCTAGTGCGAATGGATGTTACTCAGAAAAAAGCAGGACTTTCGCGCAAAAAATAAACAAAAATAAGGCAAAAATTCGAAATTCTAGAAGAGTTTACTTTCCTCGAAAGATAATTTTTGCCTAAAACAGTGCAACTACGCGCT # Right flank : CATTGGCTGACAGACTTGTTGTCTGTCGCTCCCTCCCAGAATGTGTTTTTTCATGAAGCCATTGTAGTTAACAAAGATCTAACTTCTACTTTTGGTTGGAAGGTTATTTGTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAATTTATGAACACGAACTATATCCAGATTATCTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGACACGAAGCTCCCCATAGTCAAATAAATCCGATTCTTGAAAGGAGAGTCGGATTTTAGTTTTGTTTGATTTCGATTTTTGTGCTATAAATTTTTTGCAATATCTGCTTGTATTTTCCTGAGATTCTGCTATAATGGTAAAATATTTATTTAGGAGGAAGAGAATGAGCTATATTTTGGAAATTTTACCTAGTCTTCTAAGTGGAGCAGCAACTACCTTGCAGGTGTTTGCTTTGGTCTTGGTTTTTTCGATTCCTTTGGGAATTATGCTGGCTTTTTCGATGCA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 61792-62686 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPQ01000004.1 Streptococcus cristatus strain A54 D8794_contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 61792 36 100.0 30 .................................... AATCATAAAAAATAATCATATGTCTCATTC 61858 36 100.0 30 .................................... ATTTAGGCGTATAAGGGCCGAAGTAGTTCA 61924 36 100.0 30 .................................... TGTTTCTCAAAACAGAGTCAGCGACATTGA 61990 36 100.0 30 .................................... AGTGTTGTCATAAAATCAATAACATCAAGA 62056 36 100.0 30 .................................... GGAGGAGACTATGGCACAGCGGAGGATGTT 62122 36 100.0 30 .................................... CCTGTTCTTTACTCATAAAGTTTTGGTTCC 62188 36 100.0 30 .................................... TTTTCTCCCGTAAATCTTCATTCTCGGATT 62254 36 100.0 30 .................................... TAAATTTATTGATTTTATGATCGCTGAATA 62320 36 100.0 30 .................................... TACGTGAAGTAGATGTTTCTTAAATCATTC 62386 36 100.0 30 .................................... AAACTGTTCCTTTTACAGCCAATGATCCAG 62452 36 100.0 30 .................................... GATTTCTCAGGATTCTATATTGCTTTCAGA 62518 36 100.0 30 .................................... CCACATCAGAAATAATCCCTTTTTTCTTTT 62584 36 100.0 31 .................................... CATCTTGCCTTGCGTGTTGACTGTAGCTTTT 62651 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTATCTGACTTACCAATCTTTTGTAAAGTGTTGCAAACGCCTCCAAATGATGACAGAAAAATTTCCTAATATTTATGTGATATCTTTTCCTTNAAATGAAGGCTATCTTCATATCAACAGAGAAAATATGGAATTTGTTAATATTATTTCTGGTTTTATAGAGCATTACTATGAATTTCGGTTTATGTATGAAAGTTTTGTACAACGTTATCCATCCAACGAGATTCCCAATGAAGAAGAATTTTTAATTTCCTTGCAAAAAATTTCTCCTTATTTATTTAGCTCTGATGTGGAGCATATGAGTCTTTCGATTTATGATATGGTCACTTTAAAAATTATGAATAGCTTATACCAATATGATAAAATTATTGATTTTAAAGTACAGATGGCTAATCCATTATTAACAAATTTTTTAAAATATTAGACTTGACAAGCTTTTGGGGAGAATCTATAATCAGTATGAGAGTACAAAAAGCAAAAATTTTTAATTTGAG # Right flank : CAGAAGAAAACTAAGCGGGCTTGGTACTGGTCTCATAAAATTGATTTTTATCTTGACAAACTTATTACTGGGAACAAGCAATGTTGTAGATGGTTCTGGAAGAATTCGAAAGTTAAGATTAGAAGGAAAAGTAATTATGGAAAATTCAAACCAAATATCCCAATGTCAGACTCTTTGGGCTAAAAATAAGTATCTGGTGCTCAGTCATTCCAGTAAGATCTATCTGGAAATCCGTCAGTATCTGAAAAGCGATTTGGTGGAAGCAGCACATGTTCAAGACTTGATTGATCAGGCGGTAGCCCTGCCTGAAAATCGCGGTCAGGTCTGCAATGCCTTTCAGCATGTTTGGGGCTATTTTAAGAAAAAAGCCAGCCCAGCTGAAAAAGAAAACTTTATGCTATTTTTAGAGCGATACCAAGTAGGTCAGGTGAAGCAGGAGGTTTTGGTAGAAGCTGTGACAGATTTGCTTAGAAAGTACCCCAATCCCTATCTGCAACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //