Array 1 46942-41087 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAGF01000001.1 Acinetobacter baumannii strain Aci00860 isolate Aci00860 Aci00860-merged_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 46941 30 96.7 30 .............................A CTGAAAGAGTAACTAACTGTTTAAAGAAAC 46881 30 96.7 30 .............................A TTCCTATTTATTTTGAGCCTAATACACCAA 46821 30 100.0 30 .............................. TCCAACGAAATTATGACGCTGACAAGTCTC 46761 30 100.0 30 .............................. CACAAGACCATACTCACGAATAAATTGTTT 46701 30 93.3 30 ............................AA CAGGAACTTTTGCAGGTCGTAGCCAAAGAA 46641 30 96.7 31 .............................G ATTCCGAATTATTTGCGGATGAGAGCAGTAA 46580 30 93.3 30 ............................AA CAGGAACTTTTGCAGGTCGTAGCCAAAGAA 46520 30 96.7 30 ............................A. CGTCACAGCGCACTGGTTACTTAAAACAGG 46460 30 96.7 30 ............................A. CAACAACTTTATTAGCCTTCACAAGACCAT 46400 30 93.3 30 ............................GA TACGGGTAAACCGTATGAATGGGTTGATTT 46340 30 93.3 30 ............................AA AGATATTACTGGTGTATAGAGCTGAAGATT 46280 30 96.7 30 .............................A ATTCACTTGATGCAGGTGAATCAATATTAA 46220 30 100.0 30 .............................. TAGATACAGGCGTTGATTCTGCAAAAGTGG 46160 30 96.7 30 ............................G. TACCCAACCCTTTATCAATCTCTCGACCAA 46100 30 93.3 30 ............................AG GGTGCGCTTGCACGTCAAGAATATCTTGGT 46040 30 93.3 30 ............................AA CGAGATACTGTTTCAGGAGATTCACCCAAA 45980 30 100.0 30 .............................. TTTTTAAGTGTTTCATCCACAACATCATAA 45920 30 93.3 30 ............................AC CATCAATCGTGAAGCATCAAGGCGATAAAG 45860 30 96.7 30 .............................G CAAGACAGCTATATAGAACAGTTGGAAAAT 45800 30 96.7 30 ............................A. AACTTGCTTGTACGTTTCTAATCTTCAGTT 45740 30 93.3 30 ............................GG TGGAAAATGTACATAGACATTGCACCGAGA 45680 30 93.3 30 ............................CC CAAAGGCTCAAGAGTTGAGCGCGTCAACTC 45620 30 100.0 30 .............................. GCGAGTCAAGCCGACAAAGTAATCGCTATG 45560 30 93.3 30 ............................AC GGTGTCAGAGTTTTAGAACTCAATGATGGC 45500 30 93.3 30 ............................AG TTAATACCCGTTGGCCATATTGTTCAGTTT 45440 30 100.0 30 .............................. AGTCGCATTAGCGCAAAAGCTACGTGGATT 45380 30 96.7 30 .............................A ATGATGAAATCGATGAAATGTGGCGCTATG 45320 30 100.0 30 .............................. GTTGCAACACCGCCACCGCTGTGCCTTTTG 45260 30 100.0 30 .............................. CAATGTGTTTAAGATCGGGTCAAAAGCTAC 45200 30 93.3 30 ............................CC CAACTTTTTAAATATTTAATTCTTATAAGA 45140 30 93.3 30 ............................AA CGAGAAATTGGAACTACAAAAGAACCAAAA 45080 30 93.3 30 ............................GA TTATTCTGGTTATAACTTTGTCTGTGTAAT 45020 30 96.7 30 ............................A. CTTCCGCAATGGCCTTTTTGAATGCTTCAT 44960 30 93.3 30 ............................AG CCACGTCAACAGCAGCATTGGCATTAGTAA 44900 30 93.3 30 ............................GC TAAAGGCTAAAGCAACCAAGGTGAATCTTA 44840 30 93.3 30 ............................GA CGAGCAACACGTCAACGAACTCAAAGCAAA 44780 30 93.3 30 ............................GA CATGGCGAGTTGCAGCAGGAATACCATAAT 44720 30 93.3 30 ............................GA GTAATGCAGCACCAACAGCAGTAATCGCAG 44660 30 93.3 30 ............................CA AACGTGGGTTACATCTAGTTGCCTGAGGAG 44600 30 96.7 30 .............................A ACTTAGACTGAATATCTGATGCTAAAGATT 44540 30 93.3 30 ............................AG CCGGTGTTGATCTGATATGCGTTAGCCATT 44480 30 96.7 30 ............................A. ACGCGCCAAACATGAATGGGTTTAAAACGT 44420 30 100.0 30 .............................. TGTGCCTCAATATGATTTCAAATATGGTTT 44360 30 93.3 30 ............................GC CAGGGGCAACATACCGCGCTAACGTTAGTG 44300 30 93.3 30 ............................GC AGTATTGACTGTCGGACTTGTGACAACCTG 44240 30 93.3 30 ............................GA CAGGAACCGTCACTGAAAGCGCACAGGCTC 44180 30 100.0 30 .............................. GTAACAACTTTAATGGAGAAGCCTTAATCT 44120 30 96.7 30 ............................A. AACGAGAAGCGTTGCGTAGACTTACAACTC 44060 30 96.7 30 .............................C TTGTTATTTCTGGTAATAAATATCAGAACA 44000 30 96.7 30 .............................C AAATCTAAGCCATGCTCATTAGGCATAGGT 43940 30 96.7 30 ............................A. CCTGTCTCTTGGTCAATCTTGGCACGTAGG 43880 30 96.7 30 ............................A. TACCGACTGATTGTTGAGTGGCAATGTTAA 43820 30 100.0 30 .............................. ACACATGAAGTCAGCAAATGCCACCATGTT 43760 30 100.0 30 .............................. GAATCGGCCGCTTTGCGTATAAACACCACC 43700 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 43640 30 96.7 30 .............................G GAAGTCATGAATGTAGGTGTTGAGGATGGC 43580 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 43520 30 96.7 30 .............................G ATGCGGGTTGTCCACCAGTTATGACTACTT 43460 30 93.3 30 ............................CC AAGCTGTGAATGTTGGTAATGCTTTAAGCG 43400 30 93.3 30 ............................CG TCAAAACAATCAAAAAAGCAATGAGTACAA 43340 30 93.3 30 ............................AG TGAATGGGATTTATTCGCAAGGTGATATTA 43280 30 100.0 30 .............................. GTTTCAGTTGCATAGTCAAACGATGAGAAC 43220 30 96.7 30 ............................A. TAGCAGGTGATTACGCAGTCTTATCTAATG 43160 30 96.7 30 ............................A. TAAGCAAGGGCTGACCCCGACCGCCGAGCA 43100 30 96.7 31 ............................A. TGACTTACAGCGTTATGAGAGATCCCTAGTT 43039 30 96.7 30 .............................G ATGATTGGATAGAGATTCATGCGTTAGATT 42979 30 96.7 30 ............................G. AAAAAAGAACATTTCCCGCCAAAATTGACG 42919 30 100.0 30 .............................. TGGCAACCAGTCGCCCTATGCGACCTGATA 42859 30 96.7 30 .............................G TAAAAAAGTTTAATAATTTTTTCAGTGAAT 42799 30 96.7 30 .............................A CAGCAATAACGACCAAACCGATATAGGTAA 42739 30 96.7 30 ............................A. ACGAACATCATTTACTTGCTGAAGTTGCTT 42679 30 96.7 30 ............................A. GCTCTCAATAATTCGCAAGTAAAAGTGGAT 42619 30 93.3 31 ............................AA AAAGTTTTTTTGACAATCAAGCCGGCAAGTT 42558 30 96.7 31 .............................G CATCGAAGTCATAGAACGCTTTGAGTTTCCA 42497 30 93.3 30 ............................GC AAGTGTCACCTTTAAGTGCACGGAAGAAAT 42437 30 96.7 30 .............................C CATTCTCGCTAAGTGGCATCACACGCGATG 42377 30 100.0 30 .............................. GGTTGTTTAGTAAGTTCAAAGCCCGTTGTA 42317 30 93.3 30 ............................CA ATGGATTTAAAGATTTCAACCGCTTGGGAG 42257 30 93.3 30 ............................AG TTGATATGATTATTAATATTAAAGTTGTTT 42197 30 96.7 30 .............................G TGCCCATTCCCGCAAACACGGCGCAACGCT 42137 30 93.3 30 ............................CA TGACCCAACCACGTAAATTCATACCACACG 42077 30 93.3 30 ............................GC TCCGTAATTAATCAAGAAATAATCAAATTT 42017 30 93.3 30 ............................AG TAGTTGCACCAGACTCCGCACAATCTAAAA 41957 30 93.3 30 ............................AG CAAATAGATCAACTGGTGCGCCCTATGAAT 41897 30 96.7 30 ............................A. CATCGAAATTTAGTTCTAATTCTTTAATTT 41837 30 93.3 30 ............................AG TCTTTAATGTCGGCAACATGCTGTGCAAAA 41777 30 96.7 30 ............................G. AAATATGCTGCTTTAACCCGCCAAACGAAT 41717 30 96.7 30 .............................G CATTAAGACGAATGCGGGCAATTGGTAATG 41657 30 93.3 30 ............................GA GATTCAAGTTTCACCGGATGGCACAAGTAA 41597 30 93.3 30 ............................AC CAGAAAAGCAGAGTAAAGCTTCACAGCCAT 41537 30 96.7 31 ............................G. AAAAAAGAACATTTCCAGCAAAAATTGACGA 41476 30 100.0 30 .............................. GCTGCCTGCAAACTTGTTTGGGGCTTTATG 41416 30 93.3 30 ............................AC TGGAATTCAGCAGTAAATAAGGGGTTAAGA 41356 30 100.0 30 .............................. TAAAGCTAAATGAGGGTTAAACCTAAGAAA 41296 30 90.0 30 .......T....................AA CGTGAACAATTGTTTTAGCTTTGAACATTA 41236 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 41176 30 86.7 30 A......A.........T..........A. TTTGATCTTTACTTATTCTCGCTTCAAACA 41116 30 73.3 0 .......A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 98 30 95.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCTACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //