Array 1 17957-17745 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVO01000041.1 Thermomonospora echinospora strain DSM 43163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17956 29 100.0 32 ............................. CGCGCCGAGATCTCCTGCACGACGCGTGCGGC 17895 29 100.0 32 ............................. CGCTTGGTGACGACCGCCGTGCCGGTGGCGAC 17834 29 100.0 32 ............................. GCTTGGCGGCGTTCAGCCAGGCCTGCCTCGTG 17773 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCAACATCAACGGTGCCGTACTGCTGTTCACCTTGGTGACCGTGCCGGCCGGCATCGCCCTGGCGCTGCTCCAGGTCCTCAGCGTCAGAGACCTATGGATCTTCACCACCGTCTTCGCCAGCTGCCTGCTCCTCACCGGCCTGCTCCTGGCGACCGGCCCGGCCCGAGCCGTCCTCCGCTCAATGCGAAGCCCTCGCAAGCAAGCCATCGCCGCCCCAACCCACCACCGGAGGCGATGACTCAACGCACCGCAGGAACGCGCTTAGGTCAATCCACCGGCAGCCCTCAAAAGCTGCAGACGAACCACTGGCCCACCACGCCAGCACCTTGCCGATTTGCACCGCGGACCAATAGCACCCACACCAGCTTGCTCACATCCCCACATCCAGGCACCCTGAACCAACGATCGAGCCACGAACGAGGCCATGCCCGAAATGTCCGAGTCTGCAAAAGTAAGGAATTCCAGCCCCTTCTCGCCCTAAACCCGCAGGTCAGCCAGT # Right flank : TCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24143-23809 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVO01000041.1 Thermomonospora echinospora strain DSM 43163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24142 29 100.0 32 ............................. CGGTCGTGCGGCACGTCGGGGTCGTGGCGGAG 24081 29 100.0 32 ............................. CGCTGGGTGATGCCGGTCGGCTCGGCGACGCC 24020 29 100.0 32 ............................. TCGAACTCCATGGCTTCCTTCCTGGCCGCGAT 23959 29 100.0 32 ............................. CCTCGGAATCAAGTAGGAGGCAACCCCTTGAC 23898 29 100.0 32 ............................. GCTGGTGGCGAGGCCCTGCGGTACCCATGTCC 23837 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGTGGTGGCCAGCCACACCACGAGGCGACGCGCGTCCTCGAGCCCACCCGGCACCTCCGCCGCGATCAGTGATCGCACCCGCCAAGGGACCCACTCATCCCACAGAAGCCCGGCCACCGCGCCGCTGTCGGCCATGTGCCGCCACAACGGCAGCCACCCACCAGTCACATGATCATGCTTGGCCCACACGGTCCGGGCAGCGGCCGACAGGCCATCCCCCAGCCGGACGGGCTCCTCCCCATCAGGCATGAACGCAGTGAAGCAGACATCAGGGTGCTATGCAGAGTTTCTACGGATTTCGTCTGACGCTTCTCTTCACAGACGATCTTGAAGACCCGAACCACTCAGCTCGGCAACCCCGTCCAGCTTGCCCCCGCCACCCGACCCAGGCACCCTGAACCAACGATCGAGCCACGAACGAGGCCATGCCCGAAATGTCCGAGTCTGCAAAAGTAAGGAATTCCAGCCCCTTCCCGCCCTAAACCCGCAGGTCAGCCAGT # Right flank : CCGTGCCTGTCGCCGTCGAAGCCGTCGTCTTGCTGCTCCCCGCGCACGCGGGGATGGTCCCGCATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCTGCTCCCCGCGCACGCGGGGATGGTCCCACCGGTGGCTACGCCATCGTTCCCCACCCAGACTGCTCCCCGCGCACGCGGGGATGGTCCCGCCTTCCAGCGCCTGGGGAGGGCGCACCCCTTCTGCTCCCCGCGCACGCGGGGATGGTCCCTCGCCCGGCCGGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6422-6877 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVO01000002.1 Thermomonospora echinospora strain DSM 43163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6422 29 100.0 32 ............................. GGCGGGTTCCTGCCGACCGGGCCGTCCCTGGT 6483 29 100.0 32 ............................. GCTCCCCTCCCTGGGAGGAACCCCTTGCGTCC 6544 29 96.6 32 ............................T CACCGCCGCTGGCACGAGGGCCGGGGGATCGT 6605 29 100.0 32 ............................. TTCTTGCACGCCCCGCCGGACGTGCGGCCGCC 6666 29 100.0 32 ............................. TGGTGTTCGTCGGGCTGTTCCTGGCCGGTGTG 6727 29 96.6 31 ............................G GTTCCTCTTCGAGGGCGGTCAGCCCCTCCGC 6787 29 100.0 32 ............................. CCCGCCGGCAGGGTGGCGACGCGGCGGCCGGA 6848 29 96.6 0 ............................G | T [6873] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCGACTACGTCCGCGCCTGGCGCTCGACCGTCCCGGCCACACCGCCGCAGCCCGTCGGGCCCACGGTCCGCAAAGCCGCCGGCTGGTTGCTGCGCGACCCGGCCCATCTCACCACGGACGAGCAACGCCAGCTCGACGCCCTCACCCAGGCAAGCCCGACGTTGGCCGCCCTCCGCCGGCACGTCGCGGCGTTCGCAGTGATGATGCTCAACCGCCAAGGCCACCGCCTGGAAACCTGGATGAACGCCGTCCAGGCCGATGACCTGCCCGAACTCCACTCCTTCGTCACCGGCCTGCGCCGCGACTTCGACGCCGCCCGAGCCGGCCTGACGCTGAACTACAGCTCCGGACCGGTCGAGGGTCACGTGAACCGCATCAAAACGATCAAGAGGCAGATGTATGGCCGGGCCAATCCCGACCTGCTCCGCAAACGCATTCTGCTCGCTGACTGATCCGATCACGGAATGTGTGCCTGAGCCCAGATTCGCGCGCCGTTGACA # Right flank : GCCCTTGACTGGAAAGAAACTCAGAAGCAATCGGCGCCATCAAAGCAATCCGTTGATCACTTTGCATAACACTCGATCCCGCAAGGGAAATAAGACATCTAGACATGCAAGCCGAACCAAACGCTCGGCAATCATCATATCAATTTCAAAGGCCTGCCCAGATAAAGGTGTAACTAGACAGGCCCACTGGACCCTCTCTACTGCGACCGAAGATGATGGCGTTGACTAATCAAGTCGGCGGGAATTGCCGTGTCGAAAACGGCAGCCCGGTTTTTTGTGTTCGCCGTGGCATGGCGAAGGCCAGTACCAGCGCAGCCGGCCAGCCTACGAAGGTTGCGCAGCCGATGGTGTTGAAGAGGATGATGGTGGTGAGGCTGTCGACTCGGCGGAGCATCGCTACGAGCGTTGGGAGGACGGCGAGAGTGGCGAGGCCGCCGATGATGAGCAGCCAGAACCAGGGGCTGGATTCGTAGGAGTTCATGGGCGCTCCCTTGGTCAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 342775-343005 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVO01000002.1 Thermomonospora echinospora strain DSM 43163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 342775 30 100.0 35 .............................. AGGCTGTGACCTGCGGAAACACGGCATCGGCGCAG 342840 30 100.0 39 .............................. GCCCATCTTCTCCAGCGGGTTGGCCAGGTCCACCCACCC 342909 30 100.0 37 .............................. GCGACGATCCACCCGGACGGGCCGGTGATGGTCGCGT 342976 30 93.3 0 ......................G...G... | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 98.3 37 GTCCTCATCACCCCTACGAGGGATCGCAAC # Left flank : GCCGAGCCGGACGGCCCCACCCTCTACTTCACCGAAGCGGAGTGGGAGGCGTTCGTCGCCGGGGTCAAGGACGGCGAGTTCGACGACCTGCTGGAGGACCTCCCCCCACAGGACGACCCCCAGGGCTGACCCGGCGCCCGCCGCAGCGGGGCGGGACCGCCCCGGCCCGGCCCTCCGTACGCGCCCGGCCGCCCAGCGGCCCGGACAGTGTGCCGGCCGATGGTGCGGCCCGCGCGAGGGGTCCCCGCCCAACGGACGGACCCGGCCACCCGGACCAGCCCTCGGCCGACGCAGCCAACGCACAAGCCCTCAGCCTTCCTCAGGCTGCGGCGCTGTCGTCTGCTCGGTCCTGGGCCATGCGGCCCACTACGGTGAGGGAGGAGCCCACGGCCGGGGTTTTCAGCGAACCTCCCGGCCCGGATGCACAACCGAAGGTCTGCTGCAAAACACGGCCCCAACCGCGCGGCTTTCCCTCTCCCGGCCTGCGGCTTTACCCTGGG # Right flank : CTACTGCTGCGACATGTAGGGACGCCAGATTGACTGCGCTCGCGGTCTCTGAATCCACCATTGGATCGCCGAGGAGGATGCGCGTGGTGGAGCCGATATCGCCGCTCCTGGCCGTTGCCGGGGGCGCTGGATCCGGCAAGACCGCCATCGCATGCCGACTCGCCGACCTGATCCTTGAGGGCACTCAGCCGATCGACGTCCAGGCCAAGCGCGTGCGGCTCCTGCTGGAACAGACCTGGCAGGAGCCACGACCGGCGGGTCCTGCCGGTCGCCCGGCTCGTCGCTGACGCTCGTGGGCGTTCCGGCCGGTGTCCTGCGGAGCCCTTGGGCGGCGGCTACAGGTCGTGCTCGCCGGACCTAACCGAGGTCAGGAGGGCAGACAGCTCGTGACGGCTCAGGAGCAGGACCGGGCCGGCCGGGTGCTTGCTGTCCCGGATCGCAAGAACGTCGCGCACGGCGGCCAGTTCGACGCAGCCTCCGTGCTCGCCGCCGCTGTGGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 170378-170148 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVO01000015.1 Thermomonospora echinospora strain DSM 43163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 170377 30 100.0 35 .............................. TTCCACCCGGACGCCCACACGTTCCACTCGGTGCC 170312 30 100.0 38 .............................. ACGGCGGACCAGACGAGAAAGCTCCCGTCCGTCTGCAC 170244 30 100.0 37 .............................. CGGAAGTCATCTGCGGCTCAGTCGGGCACGTCGTCAT 170177 30 86.7 0 ........TG.....G...........T.. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 96.7 37 GTCCTCATCACCCCTACGAGGGGTCGCAAC # Left flank : | # Right flank : TTTGCGACCGAAGTCTTTGGGATCGCGGGCTGCTGGTGTGCGGCCCGGCGGTTCGCCGCCCGGGGACCGGCGCCCACGCCGCACGCGCCGGGCGGCGTGGCCGGCGGGCCGTGGCGGCGGCGCGCAGCGCCGCCGCTCTTGATCCCAAAAAGCTGAATTCGGCAATGATCAGTGGAGCGGCCTTGTCGCCCAGATCGGCGGTAGGTAGTGCGCTGGGCGTGTGGCGATGAGGTGGGTGCGTAGGTGTCCGGTCACGGTGGCGGACAGACCCAGGACTTCGGCCAGACGGCGGAAGGTGAGGAAGTCGATGCCGCGGGCGGCGGCGTCGCGTTCGTAGGCGCGGGCCTTGCGGTCGAGGTCTTCGGTGATGGTGGTGTGGGTGGCGGGCCGGTTTCTGGTGGCCTTGGCGCGTTCGTAGTCGATTTCGGAGAAGCCGCACAGGGTGCGGGTGATCTCCTCGGCCTGGTCCAGGGACGTCGTGTGCTGGATGGCTCGGGCTG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 496899-497456 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVO01000005.1 Thermomonospora echinospora strain DSM 43163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 496899 30 100.0 37 .............................. GACACGAGCAAGATTCGGCCGCGTCGCATGTAGTCGG 496966 30 100.0 36 .............................. GTGCGTCCCACCGCGCCCTCGGCCTACGGCCATAGG 497032 30 100.0 36 .............................. TCGTCGCCCTCGTCCCAGGTGTCCAGGTCCCACGAG 497098 30 100.0 37 .............................. GACACGAGCAAGATTCGGCCGCGTCGCATGTAGTCGG 497165 30 100.0 35 .............................. ACGCCGTAGGCGGCGAACTGCCCCTTGATGTCGGC 497230 30 100.0 34 .............................. GCGTCGAACTGCGCCGCCAGCGCACGCGCGACGG 497294 30 100.0 37 .............................. ACACGGGTCGTCCCGTCCCCTCCGCCCTGCGGATCGC 497361 30 93.3 36 .........................A..G. GCGGGGCTTCGAAGTCCTGCCAGACGCGCAGTAGGC 497427 30 73.3 0 ..............CA.....T.A..GCGT | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 96.3 36 GTCCTCATCGCCCCTGCGAGGGGTCGCAAC # Left flank : GCCGCCCCAACTCCACACCCCTTCACATAGCAGGAGTGTTGCGACAAGTACTGGAACCCGCCCGTCGCCAGGGGATCAAGATTCGAGCTTCATTGACATCTACTGCCCTCGATCCTGGACCTGCTCTCTCGCGGTGTGTGGGCTTCGCCGTGGACGGCCACCATGACACCGCCCCGACCAAGGTCGCCTCGCAAGCCGCCTCACGGTACGCGGCGGAGCGGTCGATGAGATCATCACGCACACTGACCTGGCTCGAGCATCGAGCCCGCCAGCGGGCCTGGCATGAGTTCCTGTGCGTGCCCGGCGGACAGCATCGAGACCATGTGGTCAACTAGCAGGAGACCAGGGCTTGCGTAGGGATACGACGGGAGCAACCACAAGATCGTCTTCATCGATTTCAGCAAACCCCCCGGCTCAGATGCACAACCGGAGGTTCACTGCAAAACCAAGCCGTATCAGCCCGTCCTCATCCCCGTTGGCCTGGGCCTTTACTTTGGGGG # Right flank : TCAGAGACGGCGGTGGGTGGACATCGCGTTGATACCGGCGAACTGCTGGCGCCTCGCGCCGACGCCCCGGCCGGGGGCAGGCTCTGGGGACAGCCTGCTTCGGGGAGCTGAACCGGCCCCGAGAATGAGATCACCTTTAACTCTTCCTACTCAGCGCAGGCATCCAGTGCCCGCATGTACACGTTGACCAGTGCATATACGTGAGTATAGATTCAGATCACCACGTTCACTCAAGTAGGTTCCAGGTCGGCGTTGGCTGAGCGTGGAGGTCCAGGGTCCATGCCTGGGTGGTTTGTCCCGGCGGGTGCGAGTTGCCACGACCGGGTCTGTACGGTTTTCGGCACCTCTCTGTGTCAAGCCGCAGTGAGCAGAGAGGTGCCTTTAGCTGGACAGACCCATCTGGAGTCCGTACGGGCCCGCGCGGCATCGGCGGCTGATGCGCCGAGCGAGGAGAACGCAGCGGGAGATCGTCTCCAGGTCAGGCCATGGGCGAGGGCGAG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 505326-504897 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVO01000005.1 Thermomonospora echinospora strain DSM 43163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 505325 30 100.0 36 .............................. AGGGCGACGGCGAACTTCGTGGTGTCGCCCTCGGTG 505259 30 100.0 38 .............................. GACGCCAGGACGACGTGACCGAGGCCGGTGGAGAACCC 505191 30 100.0 37 .............................. ATGTCGTCCACACCGAACGCGATGACCTTTTCCTGAT 505124 30 100.0 35 .............................. ATGACCGTGAAAGGCGCGTCCGCACTGGCGTAGGC 505059 30 96.7 36 ................G............. AACACCAGGCGGGTGATCACGCCGCCTCCCCGGGGG 504993 30 100.0 37 .............................. GTGGGGCAGTCGGCCGGGTGCTCGATGTCCATCCCGT 504926 30 86.7 0 ...............GT......C....G. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 97.6 37 GTCCTCATCAGCCCTACGAGGGGTCGCAAC # Left flank : GCAAGGTCGCCTACGAAGAACTCCTCTACCTCGAGGCCCTCCGCCTCACCCGCCGCCTCCTGGAAGGCACCCCCTACAAGCCGTTCCGGATCTGGTGGTGATCGATGTACGTGGTCGTCGTCTACGACACGGCAGCCGAACGCAACCCCAAGATCCTCCGTACCTGCCGCCAGTACCTGCACCACGTCCAACGCAGCGTCTTCGAGGGCTCCCTGAGCCCCGCCCAGCTCCGCCGCTTCAAGGCCGCCGTCGAGTCCTGCATCGACTCCGGCTACGACAGCGTCCTCGTCTACACCTATCCCCCCGGCGCCACCCCAGAACGCCAGTCCTGGGGACGCCCGCAAGACTCCCCCACGGACATCCTTTAACCCCAAGCCAAGATCACCATCAATGATTTCAGCAAACCTCCCGGCCCAGATGCACAACCGGAGGTCCGCTGCAAAATTGGCCTCCAACCCCATCCCCTTCCCCCGCTCAACCTGCCGCTTTACTCTGGGGGG # Right flank : TACGGTGACCGCCTGGTTTTCAGGTGGTTGGCGTCGAGCCGAGCGAGCCCATCGGCGCATCATGGGTGACTAGGACACGGATGGGCCCGACCCGGCCCGCGCGGCGGATCGTGGTGGTGGCAGTGCTGTCCTGTTGCCGCTCCTGGGCCTTCCGCGCGGGCCTTGCTGGCGGCCGTGGTCGGCTGGATCTGGTGGATGGCAGCCTGGCCTGCGGTGTGCAGTGGTGCGGCGTGGTCGGGGGCAGGTCCCAGGCCCTGACCGATTTGGGGAGGGCTGCTGTGGATGGTTTCGCGATAGGTCTCAGCGGACGTTGACGTGGTCGGCGGCGCTGACCGTGGGCAGGTGGTTCAGGTCGCCGGCGAAGGAGACCCGCCAGCTGCCGTGCTTGGTGGCCTTGTACCGCTTGCTGAACCGGCCCTTGGTGTCGGTGGTCACCGTGCCCACCTTCGTCCACTTGGTCGCGCCTTTGGCGCGGAAGTAGACGGTGAGCTTGCGCCGGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 514433-513864 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVO01000005.1 Thermomonospora echinospora strain DSM 43163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 514432 31 100.0 37 ............................... ACCGTGAGCGTCTCGGAGAACTCCCACCGACCCTCCG 514364 31 100.0 34 ............................... GCCGAGAGCCGCCGGTCGAGGAACACCAGCACAT 514299 31 100.0 35 ............................... AGCGGCTTGCCCGGCCCGCACGTCGAGCCGCGCGG 514233 31 100.0 35 ............................... AGGACGTACTCCAACAGCCGGTAGCTGGTGATCGC 514167 31 100.0 38 ............................... GCGGCGTAGCGGTCGCCGGTGCGGCGGGTGACGCCGAT 514098 31 100.0 37 ............................... GTGACGATCACCACGACGATCTCGTCGGGCCGCCAGG 514030 31 93.5 37 C.....................A........ CGAGAACTGACACAGACTCATTGCTGTTGCTCCTGAG 513962 31 100.0 37 ............................... AACCACTGGGCGTACCAGGCGTCGTCGGCCTGCGACA 513894 31 96.8 0 ...........................T... | ========== ====== ====== ====== =============================== ====================================== ================== 9 31 98.9 36 GGTCCTCATCAGCCCTACGAGGGGTCGCAAC # Left flank : CGCACTGGACCTGCAGGGCCGGGGCGAGGACTTCCGCCAGCCGGTCAGGGCGGCCTGCCGACAACACGGCATCGGCACCCTCCTCCTGCTGCGGAACACCACCGACACCCTGGAGGAGAACGCGAAGACGTTCGGCGCCGTGGTGGAGCAGACCTGCCGCGCCTGGCGCGAGGCCCCCTTGCCCACCGCCGCCCGCAACGGCCACCACGCAGTGTTCCTCAGCGGCCCCGTCGCCATCTCGATAGCCCTCGGAGCCCGCCTGGCCGCCGCCCACCCCGACCGCTGGACCGCCTACACCTTCGACAACACCACCAACACCTACGAGCCCTTCCCCGCCCCGTCGCCCTCATGATTCACTCCGTGCACAACACCGAACCCCTAAGATCATCAGCTCGGATTTCAGCAAACCCCCCGGCCCATCCGCACAACCGGAGGTCCGCTGCAAAACCACCCCGTTCAGCCCCGCCCCCGCCATCACCCACCTGCGGCTTTACTCTGGG # Right flank : TTGCACCCCTGACGCACCTCGCTCACCCGGCATTCTTGTTGGCTCTATGAGAGGCCGCAGTCCCCAGTGCTGGCGAGGCTCAGTTCATAGTCATCGACGCGCCTGGTGGGCTGCGGCTTTGGACGCTGCACGAGAGTGGGCGGGGTCTCATCCGCTTGCATCGCTCCGGCGAAGACTGTGCTCTCCGGCCTCCTGGAGGGCGGTGAGCTGTCGAAGCACGTCGCGCCCGGGTCGTCCTTCGTCCATCAGTACGTGGTGGAAGGCGCTCACGGAGGACCGAGGGGGGCCGGATGGGCACGGGCGGGGTGTCCTGGGTGGCGTGCTTGCCGCCGAACAGGACCCGAATGGTGTATTTGGGTGATTTTCGGTTTTTGGATCTTGTTTGGGATTCTTGGAATTGTTGATCTTGGGGTCGTTGGATTGGGGGTGGCGAATTTGTCGGTGGTGGGTCGTACCGTTTGTGGAAATCTGAGGAAGGAGTGGCTGTGCGGTTGCAGGTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCAGCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //