Array 1 1054-1681 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMI02000335.1 Leptospira weilii str. Ecochallenge ctg1130122076042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1054 29 100.0 32 ............................. ACTACATCGCAAGACAAGACTAAGACTAAGAA 1115 29 100.0 32 ............................. CGCTTCTTCATTGTAACGGGCATCGTTCTCGG 1176 29 100.0 32 ............................. CAGAATCAACTTCTGAATTATTTTCAGAACAA 1237 29 100.0 32 ............................. TCTCTTCCCGAAACGATACCACCGTCCGTTCG 1298 29 100.0 23 ............................. TTTCTCCAGGAAATGCAAATATC Deletion [1350] 1350 29 100.0 32 ............................. AAATCCGTGAAAAAACGGGATTAAAAGTAGGC 1411 29 100.0 31 ............................. AAAGAAGAGTGTAAAGATTGGTTTGATTTAA 1471 29 100.0 32 ............................. CAATAATACAAATAGAAACGCTTCGGTCGTGG 1532 29 100.0 32 ............................. GTATAAGATCTGAGATCGACTTTGCTTCATCA 1593 29 100.0 32 ............................. GTCCGAAGACGAAGAAATCGATTAGTGAAGAA 1654 28 89.7 0 .................-........T.A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 31 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : AGGTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCCGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATGGATCGAAGGATAAACCTATTCTAAATTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAATCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATTGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26104-26924 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMI02000134.1 Leptospira weilii str. Ecochallenge ctg1130122076019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26104 29 93.1 32 T...C........................ TACAGTTGCAAAATTTTTCATATCTTTATTAT 26165 29 100.0 32 ............................. GCGATAGTAATTTATACGAAGGATCAAATACT 26226 29 100.0 32 ............................. AGCGCATATGAACCAATCACGGAAAAATTTCT 26287 29 100.0 31 ............................. ACTTCCTGCGAGGAACACACGATCGACATCC 26347 29 100.0 32 ............................. ATTAGATTTGTTTGTAATAACTTGCGCTTTGC 26408 29 100.0 32 ............................. ATGGCGATGCGCAGAACTTGGGTGGTCCCAAG 26469 29 100.0 32 ............................. AATACTCATCGTTGTTTAACCTTGTTTAATAA 26530 29 100.0 31 ............................. AAGCGTTTGATGAATATCAAAAAACTGTAAA 26590 29 100.0 32 ............................. TTAATTGACAATCATCTCTGTTGCTAAATTCA 26651 29 100.0 32 ............................. CGGACGCTGTTCGCGATCTTGCCAGCAAATTA 26712 29 100.0 32 ............................. GATATCCGCACATGAGCGAAACCCTTCAGAGG 26773 29 96.6 33 ............................A GGAGATGAGGATAATCGCATATCCTTAGACCGG 26835 29 100.0 32 ............................. TTTATCTGAACCTCGGTATATGCAAAACGAGT 26896 29 86.2 0 .......................A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATACTTGGATCCGAAAATAAATCTGTCGGAATTACGACAAAATCCCCCGTGAAACGATCGGCCCCACAACGCGCCCCTTAGGAAGCGTTGTGTTGAGTTCCTTCAACGCGCCCTTTAGAAAGCGTTGTGCCCGAGTTTCCCTTATTTTTGGGTGGGGGTGGAAAGACTCGGGAAATTTTTCTCTATCAAAAAATCATACTTCTTGCAAGTAAAAAGTATCATTCTTGTCGAAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCCAAAAGCCTTCTTAATTTCTGGGGTTGGTTATGATAGCGAGCGTTGTGCCTGAGCTTCATGATCTTCAAACACAAAAGTTCCCGCACATAGAAGAACTCAATTACGGGTAAGTTCCCTTAGAAACATTACGTTCTTAATAAGAAGATTTGCCATCATAGATTGACTCGAACACAAAAATCAAAAATAGATTGCAAAAAATCCGAATTTATCCTATACAAGTTTTTTAGCCT # Right flank : TTTCAGTTTAAACAAAATAGATGGGCAATAGAATTGGGAAACAGAATCCGATTGAAAACTTTCAATGTAAAACTCATTCTCAGGAATCAACACGAAGAATAATATTTCACCGCGATCATTGAATGATAAAGTGCAATTTAAAACCAACCTACATTTGACTTCACTCTCTGTGCAATACCTTTAAACATTTTATGAGAATGAATTCTTCGGTTATCACATACTATGAGAATCGTAGAATCAATGAAAGATATTTCTTATACGAGAATTTACTAAAAAGGAAACTATAATCAGCAATATTTACAACATACGCTCGATAAAACGATTATAGTGTACCGCTTTTGTAAAGTTCAGTAATTACCGACAGTTGTAGGCAAAAATAACTTGCCAATTCGTTCCGTATGAGGAATTTCACGCATCATGTGTGATACGTTTGTCGCCACGCCGTGTCTTTTACCGGAACAGGTTCGATGATTTTTGGAAAAAATTCGAACAGGATGCTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5164-5495 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMI02000043.1 Leptospira weilii str. Ecochallenge ctg1130122076021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5164 29 100.0 31 ............................. AAGTAAACGGAGAACTCGGATTTTTCCCTCA 5224 29 100.0 32 ............................. TGATAGAAACGACAGTAATACTGAGTTCAGTA 5285 29 100.0 32 ............................. GTAAATGATAATCTCTTTTTACTGATTTTGAT 5346 29 100.0 32 ............................. AGATCGAAATAGGTCCAATTGTATCGACACCG 5407 29 100.0 31 ............................. CTGATGTAGAGACGCTTTGTAAAATTGTTAG 5467 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.5 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGTTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCGCATATTAGAGTGTCCAAAGTTTCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAAGGATCAGTAATATTTTTAGACAATCTGCTTAGAGATTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGC # Right flank : TTTCAGTCAAAACAAATAAGGACGAAACAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAACTTTCAATGTAAAAAACTAAGAGCCAATTTCAAAACCTGAAAATGTAGGAACTCTCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGAGGTATAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATTAATTCAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGAAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32257-31800 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMI02000291.1 Leptospira weilii str. Ecochallenge ctg1130122075880, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32256 29 100.0 33 ............................. ATAAATGCTTATGTTCATTGGATTTAAACGAAT 32194 29 100.0 32 ............................. AGGGAAAAGAGAAATTTGAGAGTAATAAAAAG 32133 29 100.0 32 ............................. AAACTACCCGATTGCGCGGGGAATACGAGAAA 32072 29 100.0 32 ............................. CCTCCATTCCGAGTTTTCCGCTTGGGCCTCCG 32011 29 100.0 32 ............................. AAGCCGAAAAGAAACGCAACCATTACTCAAAA 31950 29 96.6 32 ............................T GGAAAATCCCGAAGATCTTTACAACCAGGCTG 31889 29 100.0 32 ............................. AATCAATCGCCGCGATACCGTTACGAGCAACT 31828 29 89.7 0 ..........................AGC | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.3 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TCAAACTTAGTAAATTACTTAAAAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCCGGGGTCTTTGTCGCCTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAAGGTTACGCTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATAGACTTCGACGGTTTGCTTCTAATGTCCAAACCCGATTCTAAACGCGATCAGAAAGTAGTCACGAGTATTTCCGACTTTTCGATGGCCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAGACTCCCTTCTTTTAGAAGCAGATGAATCAAAAGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGC # Right flank : TAGACTTTCCAATCCGAGACCGGTGTTGTATTTTTATTTTCTATGGTGAACCTTTTTCACATGTTAAATTACGAACTTTAACGATTGTGCAAGTAACTTAACCTCGCAAAATCCACTAAAAGATAAGCTGGAAAAATCATAACGAAGCGTATCGCAGAAGAATAAACTCATAAGACATACAAGGAATCTGAATCCAATTCTAAAAATCATTTCCTTTCAAGCTTTTTTGAATCGTTTTAAACTTTGATATAAATCTTCCTTTTATCTAAAAAACTTAAAATTCCCCACCAAACCGACAAATGAAGAACCGCATATAACAAAGATGCGAGATACGGATCTGTAATAAAAACAAGTTTAGAAAAAAACCAGGCTTTGACGCCGACCTGTTTTCCATTCTCCGTCATAATTGTCCAAAGGTTAAGCGTTCTCGCAAGTATTCCGGAACCTACAAAAACTAAAATCGCGTTCTTACCGAATACGAGTAACGGTTGAAAAAAGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //