Array 1 733660-735067 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKIS01000001.1 Parvimonas micra strain FDAARGOS_569 tig00000001_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 733660 30 100.0 34 .............................. CCAATGAATTCAGTCATAGCGTTTTCATCTTTAC 733724 30 100.0 36 .............................. TATTTAGCTAATGATTTAATTGCTACTCCTGCAAAG 733790 30 100.0 35 .............................. GTTCTGCAACTTTTTTACTTTCTACAGCTTTTTCA 733855 30 100.0 36 .............................. TTTTCTATTGATATTTTATTATTATTGATTAATTCG 733921 30 100.0 35 .............................. TATATTTTGTCAAAAATATTTTTTGGTTATTTTTC 733986 30 96.7 41 ...........G.................. GTTGCTGCTAATCCTGATACAGTTCCAACAGCTGCTGCTGT 734057 30 96.7 35 ...........G.................. TAAGTAAAAACTCCTTGTTCAAAAGTAGTAGTTGT 734122 30 96.7 37 ...........G.................. TTATGATAAGGAAAATTAGGTTTGTATTCCTGATATT 734189 30 100.0 35 .............................. ACAACTCCTTATTCTCGTATATATTGCCTATTACT 734254 30 100.0 35 .............................. TTTGTTTATTTTTCAGTATCTCATCTACTGTAACT 734319 30 100.0 35 .............................. ACTTCCTTTTGTTGAAGATGTGGACAACGAGATTG 734384 30 100.0 38 .............................. GATTTCCCATTAAGCCCATTACCAAAGAGAATAAATAA 734452 30 100.0 36 .............................. AAGGAAGTTAAAGAAAAATAGGAGATAGAAATGCTT 734518 30 100.0 39 .............................. TTATATTCTGTTGACATTTTTATAAATTGTCTATCTTCA 734587 30 100.0 35 .............................. ACTACTTGAGGGGCCGTATTTGAGTTAGCACCTAT 734652 30 100.0 31 .............................. CTGATGATATACTCATCAGCGAAACGTTGTT 734713 30 100.0 36 .............................. TCCATGTTTTTCTCCTTTCTCTTGTCCTGATTTTTT 734779 30 100.0 35 .............................. TTTAATAAGTCTTGATAAAATTTTAATCTTTCAAG 734844 30 100.0 34 .............................. TACACAAGAATTTTTTTGCCTTTTGCTGTGTATC 734908 30 100.0 35 .............................. GAAAATTTAACCGCTTGATAATATCGCCATTCTTC 734973 30 100.0 35 .............................. TTTACTCCTTGAATCATAGCAACTGCAGTTTCAAT 735038 30 83.3 0 ........................T.CGTA | ========== ====== ====== ====== ============================== ========================================= ================== 22 30 98.8 36 GTTTAAATAGAAACATACTGTAATGTAAAT # Left flank : GAAATAGTAATAAAAAAGATTACTGATAACAAAACTAATGTAAATTATGAATTTAATATGGAAATATCAAAAGAATTAATGAAGATTATTAATAATATAAATTCTGAATTAAACAATATAAATGACGATGAATACATTTTATTTTTAGGAGGCTTTAAAGGGAAAATAAATTCTCTTAATGGTAAAATAAATATTGATGATATTAAAAGTGGATTTTATTTATGTGATATCGGAGGCAAAAAATATCTTCCATATGGACTTGTAAAACTAAAAATTGGAAATTGAAAATATTTATAAAGAATAGTAAAATTATTAAAAAAGATGATTTGTCAACCTTCAGTATATAAAATTTATTGGAGGTTCGACAGATTAAAAAATTGTTATAATTTCAAGTAATTCTGTTTCGATTAAAAAATTTAGTGGAAAATTTCAAAAAAATTTTGTATATAGACAGAATTGACTTATTAATGGTAGTATTTTCAATATGTACAGAACTGCCT # Right flank : AGGATAGTTATATTTTTGACATTGAGATGGCGATTCAAGTCTTGTTTGTGAGTAGTGAAAATGTCATTACTATATTGCTAATCCTAATAGATTTATTTCTGTATTTTGATTAGCAATTATGCTATAATATAAAAAAATATACAAAACTAATTATATAAACTATTTTGTATTTATTATTTGACACATTGGAATGGTAAAGTTTTAGGGGGGCTGTCTTATGAACGAATTTAATAAGTATAAAATACTAAGTGCGGGAAAGGCGTTTGGACATAGGGCTAAAATTGCTTTATTATTACTTGATAGCAGTACAGCTTATGAAGAACTTAAAGAGGAAGCTGCACAGACTTCAGTTTCTGGAAGTTATGATTGTGTAGGTGGTTTTCCTGCTGAAATACTTGAAAGAATAATAAAGGAATTGATATGCCGTGATATATGGTATTTGCCTGACAATGTAAAATTTTGGGACAGGCGTTTTGGGAGTCTATTTGAGACAAAGTTTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATAGAAACATACTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 737612-738364 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKIS01000001.1 Parvimonas micra strain FDAARGOS_569 tig00000001_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 737612 30 90.0 35 ..A..G..G..................... ATAAACTTGCTTGTGGGTCTAAATCTATTAATAAA 737677 30 96.7 36 ...........G.................. ATATCTAAATAAGGTATCTTTCCGCCTGTAAAAGCA 737743 30 96.7 35 ...........G.................. TTTTTCTATTGCTCTACTTTTTAAAATTTCTTTTG 737808 30 96.7 34 ...........G.................. TAAAGTCGCTAAAATTTATCTTATTTTTGCATTT 737872 30 96.7 36 ...........G.................. ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT 737938 30 100.0 36 .............................. ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT 738004 30 100.0 41 .............................. ATTTTAAGCGAGTTTTTAGCTTATATAAATTCCATTTATGA 738075 30 100.0 37 .............................. TTAGCTCATTATATTCTCTTAAACATTTTGAATGCTC 738142 30 100.0 34 .............................. ATCAAAAATTTCTAAGTAATTATTTTGCTTTTTT 738206 30 96.7 35 ..........C................... GTAGCAATAGTTGAAGATGAAAACGGATTACAATC 738271 30 100.0 35 .............................. TATTGTCTTTCAAGTATTTTGAATAAAACTCTGTG 738336 29 90.0 0 ..........C......T.....-...... | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 97.0 36 GTTTAAATAGAAACATACTGTAATGTAAAT # Left flank : ATTTATGATGATGGACTTTATTATTGTGATTCCGAAGTTCGGCTCTAAACATTTTGGTGCACCTGATGATATAAAGGAAATGATGGAGAAGATACCGGACAGAGCTTCTTGGGTGAATATAATTGGTGTATGTATTATGATAGTCGGATTTGTTGGAGTAATAGCGGTTTTTATATGGGCTATGGTTGATACGGTAAAAACTGATATGTCTTTTTTTGGTGCATTCATCAGATTTTTCATTATCACTGAAGGATATAAATTATTTGATATCATATTTTTTGATTATCTTATGCTTACAAAGTTAAAGTTGCCTGCAAAGATTTACCCTGAAACTGCTGGAGCGAAGGGATATGACAACTTTGGATTCAATACGAAAAGTCAAATGAATAAGCTTATTATATTTTGTGTTGCAAGTATTCTTTTAGCATTCATTTTAACGGTAATTATTCCATTAATGTAAATAAATATATTTGATAAATTTCATTAACACCGAACTTTTT # Right flank : TTAGATATTTACAGTTAGTATTATACTTAGCTAAAATATGAATACATTGTGTTTGCAAATTATTATACAAATCGGTTATAATATATATTACTTAAAAGATTTTTAAATTAATATTATTTTTTATATAATTTTTGATGTAATTAGTAATATGTTTGGAGGAAAAATGAAAGCTATATTTTTTGATTTGGATGGAACTTTGCTTCCTTTAGATGAGAAATTATTTGTTGATATTTATTTTGCGGAATTGTCAAAAGTATTTTCTGTTTATAATATTGATAGTAAGAAGCTTGTTGAAACTATTTGGACTGCAACTCATGAAATAATTAAAAATGATGGAAAGAGAACTAATGAAGAGGCCTTTTGGGATAAGTTTAATAGTAATATAAATATTGATTTATCTGATGTTAAAGAAGTATTGAAAAAGTTTTATGCAAATGAGTTTTTTACTAAGTTAAAAAAGTGTTCAACTGAAAATAGTTTGGCAAAAGTTGCCGTTGAAC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATAGAAACATACTGTAATGTAAAT # Alternate repeat : GTTTAAATAGAGACATACTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //