Array 1 849465-850160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067088.1 Limosilactobacillus fermentum strain B44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 849465 36 100.0 30 .................................... TTAGGCCAATTGCGTGGACGGTATGCATCC 849531 36 100.0 31 .................................... AGATGATTTATTTGAAGGATTGAGTAAGATT 849598 36 100.0 30 .................................... CGTATTTCAACTGGATCAATCTAACAGCTT 849664 36 100.0 30 .................................... GTTCGTTAAAAAGCTCATCAAACGCCGCTT 849730 36 100.0 30 .................................... AGGATAAAAGTGAAAGTAAACAACTATGAT 849796 36 100.0 30 .................................... AGCTATGATGGCGAAATGCACCTTTCCCTT 849862 36 100.0 30 .................................... AGTTTATAAGCTAGACCGATTAAGCCGGTC 849928 36 100.0 30 .................................... TGACGGGTACACTATGCCGATCGTCTGCTA 849994 36 100.0 30 .................................... GAGCTGATGAGATGAGCGGTAAGAGATATT 850060 36 100.0 30 .................................... ATCGCTAAGATTCGGTCGGATAACTCGGCG 850126 35 86.1 0 ..........................-..TT..A.T | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.7 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATAGGATGAATGACCTTGCTCGTGAGATTTACTCAGAAATGCAAGATTCCCTGTTCGAATTTGATTTGTCATTGGAGGTCAGATATGACGAAAGTCTTTTGAGATTATACAAATATGCGAAAATCAAGTATTTAACGCAAGTAATAAGGCAACCTTATGGTATAATTGAGACCGATCTAAAATTACATCTCGAATTAAAGGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTACCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTAGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTATTTTTTGATGAGAAAACAACG # Right flank : TTATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAGAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAAGACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAGATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1357508-1353026 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067088.1 Limosilactobacillus fermentum strain B44 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1357507 29 96.6 32 ............................T TAACGCTTTATGGTCCACGATTGAATCCACGC 1357446 29 100.0 32 ............................. CATGAAACGGCAAAGATCATAGCCCAAAAGGA 1357385 29 100.0 32 ............................. CGTTTGCTCGCAATCAAGCATTGCTAACGCCT 1357324 29 96.6 32 ............................T TTACGCAGGATAGCCAAGCCGTAACAATGGGC 1357263 29 100.0 32 ............................. AGTTAAGCAGCGGGAAGATCACGATGAAAGAG 1357202 29 96.6 32 ............................T AGGCAAATAATGGTGATTTAAGACCTGTTAGA 1357141 29 100.0 32 ............................. GGTGTCTGAAAATTGGACGCGGAACTACACGC 1357080 29 100.0 32 ............................. GCCACCTTGCGCCATCTAACCCGGTCACCCGG 1357019 29 96.6 32 ............................T ATTAGTTTTAGCCGACAAAGTAGATTGCTGAA 1356958 29 100.0 32 ............................. TTATCCGCAATCCCAGACAGCGTGTCACCAGC 1356897 29 100.0 32 ............................. GCCAAAAACAGGTCTTCTTGCTCCACACTATC 1356836 29 96.6 32 ............................T GTTCAACGCCGTCAGTGTCTTACCAGTGCCAG 1356775 29 100.0 32 ............................. AGTACTTCATTAACAAATTTCTGCGAAAGGGG 1356714 29 96.6 32 ............................T TTAAGAAGTCCAGCAAGAAGGAACAATGGCTT 1356653 29 100.0 32 ............................. TACAGTGAGCTTAAGCTAAATCGCTTGACTGA 1356592 29 100.0 32 ............................. AGCTTTTGCTTTGTCTAGCTCGTTGATAATCG 1356531 29 96.6 32 ............................T GGGCGAGTGGACTATACCGTTATGACGAAGGC 1356470 29 96.6 32 ............................T ACATGCCCAACTTATCCAGTTGGTCGGTTTCC 1356409 29 96.6 32 ............................T GAAGCCTCGTAAGATGACAATCGATTCGGCTG 1356348 29 100.0 32 ............................. CTCTCAAAGAAAAGTGTCGGTGTAACCGTTGC 1356287 29 96.6 32 ............................T TGTCAACCAGTCCAAGACCTAATGGGCTGTCT 1356226 29 100.0 32 ............................. CCCCAATAATCGTCAAGGTATGTTGAGGTATC 1356165 29 96.6 32 ............................T AACTCAATGACCTATCAAACCCGTTCGAGTTA 1356104 29 100.0 32 ............................. AGCTTGGTGGCCATACTTTGCGATTTAGCCTT 1356043 29 100.0 32 ............................. AGTACTTCATTAACAAATTTCTGCGAAAGGGG 1355982 29 96.6 32 ............................T ACCGATCATCACGCCGGTCGATCCATACTTGC 1355921 29 96.6 32 ............................T GAAGAGATGAGTATTACTGATCTCACATCGCC 1355860 29 100.0 32 ............................. AAGATCAAGCTAGCGTGGGTTAATGCCAGCCA 1355799 29 96.6 32 ............................T AAGCACCGTGACGGTTGGCCCAGAGGGAGTGA 1355738 29 100.0 32 ............................. GGCCACTTACGAGCCGAGTTTAAACTGGCCGA 1355677 29 96.6 32 ............................T TTAGGTGTTGAATTGGCATATCAAAAAAAGCC 1355616 29 100.0 32 ............................. TACAAGACCGACAAGAAAGCCGTCCAGTTCCA 1355555 29 100.0 32 ............................. CTGGCTGGCGTTTATTAATATTTTCATTTTGC 1355494 29 100.0 32 ............................. GGCAATGGGCTGGAAATCGATCCAGCTCCCAC 1355433 29 96.6 32 ............................T ACCAGATGAAATCAAAGTTGGGCAAGTTGCAG 1355372 29 100.0 32 ............................. ATCCGAAGTCCTCCCATCTATTCGCAAGCACG 1355311 29 100.0 32 ............................. TAGCTAGCCCCTCCAAATCTTTAGGAGCGAAA 1355250 29 96.6 32 ............................T CCTTAGCTGTATGGCTAATTGCGAAGTTAGCA 1355189 29 100.0 32 ............................. TTGCATTCCGGTTTGAATTACCGTTCCTAGGA 1355128 29 100.0 32 ............................. AATTGTGCTTGATGATGACGCGGCACAGTGGA 1355067 29 96.6 32 ............................T TTTCCTCCTATTCGTAATAGCGGTCGTAAGGG 1355006 29 96.6 32 ............................T ACCGACACGAGCGTTTCAGCCGTCCGGTTGCC 1354945 29 100.0 32 ............................. TAAGACACCAGCAACTGTAACTGGTCAACAAT 1354884 29 96.6 32 ............................T AGCGCTGAATTTACTAAACTTCCTGCTGGCCA 1354823 29 96.6 32 ............................T GAAATTGGCATCTTTTTTTTAGATAACCCGTT 1354762 29 96.6 32 ............................T TACCTACACGACGCCTTACGCACGGGCCCAGT 1354701 29 100.0 32 ............................. ATGTTGGACATCCGGCAACCGGCACTTACACG 1354640 29 100.0 32 ............................. ATTCAAGGCAAGCTCTATCACCTCAAGACGCC 1354579 29 100.0 32 ............................. TTAGCAGCAATGCCAGAAAGCGTGTCACCAGC 1354518 29 96.6 32 ............................T AAATTAGGCCCCACAGCGCTGTTATTGACCTG 1354457 29 96.6 32 ............................T ACAGCGTATCCTTTTGTGATCGGCTTAGGCGG 1354396 29 100.0 32 ............................. TGGCTCGTTTGCTTGATGGTGTCAGCGATCAA 1354335 29 100.0 32 ............................. GTTGGTAAGTGGGGTCAAATGCTAGGTCTTAA 1354274 29 100.0 32 ............................. CTCCTAAGGCTACGATTGCCGCTTTTATTTTT 1354213 29 96.6 32 ............................T TATGGCCGAAAAGCTTACAGATTATTACTCAA 1354152 29 96.6 32 ............................T GGACGTTGTTGTCCACGTAGTTCTGCAATTTT 1354091 29 100.0 32 ............................. ATCAGCTCATTTGAACGGGACTGGTTCATCGA 1354030 29 100.0 32 ............................. ATGTTTCCGAATGGCTTGGTTAGTATCTCCAT 1353969 29 100.0 32 ............................. CGCTATTAGTTCGAGTGTTTCTGAAGCGCGGG 1353908 29 100.0 32 ............................. TGGTCCCCGCAACTGACACTGGTAGCATTGCC 1353847 29 96.6 32 ............................T ACGGGAAGCGGTTATTGCCAAGTGGTTCCTGC 1353786 29 96.6 32 ............................T AATTGCCACGGTGTCACCTAGGCCCAGGCCCC 1353725 29 96.6 32 ............................T TCTAAGTCTAAGCCAATAAAGTATTCATCTAA 1353664 29 96.6 32 ............................T ACAAGGCAATCAATGATACTAGATTTCATAGT 1353603 29 96.6 32 ............................T GGTGCACACCAAGCATACAGCGTATACGCTAG 1353542 29 96.6 32 ............................T GTTACTGGCAGATATGCTGCTAGTCTGATACT 1353481 29 100.0 32 ............................. ACGGCCCAGGGTTTTTACGTCCTTACTGTTCT 1353420 29 100.0 32 ............................. CCGGAAGAGGAAGCACAATTCTTTATCAATAG 1353359 29 100.0 32 ............................. TGCGCGCCGTATTGTGGGGTATGGGTGGCAAA 1353298 29 96.6 32 ............................T TGTGGTACTGCCACCGAGCGAGTTGAGCCCAC 1353237 29 100.0 32 ............................. ATCGTACGTGAGTTGAAGGAATCGGGGATGTC 1353176 29 96.6 32 ............................T GATGAAACCTTTCAGTGTGAAGTTATCAATAA 1353115 29 96.6 32 ............................T GCTTTGGCGTCTGCCTCCGAGTAAGGCTCAAC 1353054 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 74 29 98.3 32 GTGCTCCCCATGTATATGGGGGTGATCCC # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : ACATGGGCTTTAGTCGTACGAAGGAGCGATATGGTTGAGAGAATGTACGGCCACTACTACTCACCAACCACGGTTTCAAACATCACTAAGCGGACGGAACACCTGGTTGAAGAGTTCCACGAGCGCAAATTCAAGTACTCACAGTACGTCTGTGTGTTCCTCGATGCTACTTACATTCCGTTACGCCGTGGTACCGTTGAACGAGAAGCCGTTAACGTAGCGATCGGAATTCGAAGTGACGGCGGTAAGGAAGTTCTTGACTACAGTATCGCACCGACCGAGAACGGAGCCGCTTGGTCTGAACTACTCCAGGGATTACGCGCACGGGGGATTAAAGATATTCAGTTGTTCATCGCCGACGGTTTAGTTGGACTTCAATCTACGATTGAGGCTAACTACCCGCAGGCGAAGTTTCAACGGTGCTGGGTCCGCGTAGAGCGCAACCTGTTAGGGTACGTTCGCAAAAACGATCGCAGGGAGATTATCACCGACTTTAAGGC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //