Array 1 131428-130910 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000020.1 Streptomyces mimosae strain 3MP-10 NODE_20_length_143678_cov_43.652096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 131427 29 96.6 32 ............................T GGCGCCGATCAGGCCGGCGTTGATGCCGATCG 131366 29 100.0 32 ............................. CGGCGGTCGGAGCGGCGCCGTTCGTCGGCGGC 131305 29 100.0 32 ............................. CCGAACGGCCAGTACGGATTCATCCCCGAGCT 131244 29 100.0 32 ............................. CGGATTCCTCGGTCCCCCCACGTTTGGAACGG 131183 29 100.0 32 ............................. CAGGCCACCAACACCCTCGCTTGGCTGATCCC 131122 29 96.6 33 ....C........................ TCTCCAGTGCCGCCGCGCTCGTACAGCTGCCAC 131060 29 100.0 32 ............................. AACGCCTCGCCACCGTCCTCTTGGACGACGTG 130999 29 93.1 33 ..............G.........T.... GGCACCCGGACCGCGTCCCAGTAGACCCCGGCC 130937 28 82.8 0 ....................-..ACC..G | ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.6 32 CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GCGCGGCGCGCGGGGTCGCCGGACGGCGCGCGGCGCGGCCGCGCGCCGGGGTTTACGCCCGGCGGGCGGGGATACTCGCGCGCCATGAGTGATCAGCTGCCCTCACAGGCCGAGGGGGAGCGGGACCCGGATCTGCCCGACGGTGCGAACCCGGACGACGAGCTGGAACGCAGCGGCCACGAGCATCCCCGGCAGACGCCCTCGCAGGCCGAGGGCGAACGGATGGACGACCGCGACGACGAATAGCCCCGGGCGAACGCGTTTCGCCCGGGGCAGCGGGCGGGGGCGCGCGCCGCGCGCCGGCCCGGCGGGCTGTCGCGCACGACGGCCTGCGCCCGGCCACGGCTACGCTGAGGCTTCTCGGGCGGCGCGGCGCCGCCTGGTAAGGGGGAGACATCGGTGAGCCGTCACGAAGCAGCGACCACTCGGCCTTGTCGGGCCCCAAAGGTAAAGTTGAGTAAAATCCGCCCCCACCCCCGATAAACCTGCAGCTCACGAAC # Right flank : TCCCCCCGGCCCCTCGCCAGGCCGGCGGGGCCGCCGCCCCCGCCCGGGGCCCCCTGGGCCCCGGGCTCCCGGGGCGCCCCGCCAGGGGGCACCCCGGGCTCCGGTCAGCCGACCAGCTCTGCCAGGACATCCTCCATCGTCACGAACCCGAGCAGCGTGCCGCGTTCGTTGACCACCGACGCCAGGTGGGTCTCCGCCGCGCGCATCGCCGTCAGGACGTCGTCGAGTCGGGTGTCGAGCCGCACCTGCACCACCGGGTGCAGCGCGCGGCGCGGGAACGGGCGGTCCCGGTCGCGGTCGTTCGCCGCCAGCGCGTCCTTCACATGGAGGAAGCCCAACACCGTGCGCCCGGGCCCGGTCACCGGCATCCGCGAGTAACCCGAGGCCGCCGACGCCCGTTCCAGCAGGCGGGGCGTCACCCGGTGCCCCACGGTCACCATCCGGCCCGTCGGCACCATGATCTCCGTGACGGTCCTGCTGCCCAACTCCAGCGCGTCCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107366-106730 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000010.1 Streptomyces mimosae strain 3MP-10 NODE_10_length_276143_cov_53.500109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 107365 29 100.0 32 ............................. GCGGCTGCCTCGCCGCCCGGCATGGTCGCTTC 107304 29 100.0 32 ............................. ACCGCCTGGCAGGGCGGCATTGACGCGGTCAA 107243 29 100.0 32 ............................. CTCGGGCGGGACTGGGATCTCGTAGATGTCGG 107182 29 100.0 32 ............................. CAGCAGTGGAAGAACCAGCCGCAGACCATGTT 107121 29 100.0 32 ............................. TTGCCGTTGCTGTTCCCGTTATGGGTGAACCC 107060 29 89.7 32 ..............T..CC.......... TCACAGCCCGTCTGGGGCCTGTCTGGGGCGGG 106999 29 82.8 27 .........AGA..T............T. ATCGTCGAGTCCGCCCCGCGCCACATC 106943 29 100.0 91 ............................. CGCAGCGTCGCCCCGCGCGGGGTGAGGGTTACGTCTTCCCCGTGCGCGGGGATTGGTCGGCGGTCGTCGCTAGGTCCGTGGATATGCCGGT C [106934] 106822 28 82.8 33 ..T..........-.......A..G...C TCGTACAGGGTCTCGCTCGGGGCACACCACCCC A [106811] 106760 29 79.3 0 ..A..........C....A..C.T.C... | CA [106737] ========== ====== ====== ====== ============================= =========================================================================================== ================== 10 29 93.5 38 GTCCTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : GACGGAACGCTCAGCCCGCGCGTGCTCCGCTCGGCCGCCGGGGCCGTGGCCCCCGGCGGCACCCTGCTGATCGAGGCCCACGGCGGGCCGCCGCCCTGGCAGCACGACCTCCCCGACGACCTGGCCTTCCCCACCCCAGAGGAGACCGTCGCCACGCTCCAACTCCCGCCCGGCGAGTGGGAGATCCTCCGCGCCGAACGCCACCCACGCAGCCAGCGCCACCCCCACACCGGCGAGATGGCCACCCGCGAGGACCAGACGGTGCTGGCCCGCAGAGCGCTGCGCTAGCCGGACCGGAGTCGGCGGCGCGGCCGCCGCCGACGCGGCCGCGCGGGGCGCGGCCGGAGGCTGGCGGGCCCTCAACGGGCGCTCGCCGCACGGGCATTGTCAGAGGCACCCGATACGGTACGAGCCATCCACCGAGGAGGAGGGCCGCGTTGCACGCGAGAGATGAAAGCAAAGAAACGGCAAAGCGAGTCTAACGATGCAGCTCAGAAAGT # Right flank : GCGCCCCCGCGCCAGCGGGCAGGCCCGGCACGCGGCCGCACCCCCGCGTCCCGGCGCCCCCGCGCCAGCGGGCTCCGCGCCAGCGGGCCAGCGGGCCCCGCGCCGGGGCGGCTTCGCCCGGGCCCCCGGGGCCCGGGCGTTCGCTAAGCCGGGCCGGCCAGGCCCCCGTGGGTGAGGACGTTCACCACCCGCCCGCTGGGGTCGCGGACAAAGAAGCGGCGGACGCCCCAGTCCTCGTTCCGGATCGGGTGGACGATCTCCGCGCCGGCGGCGCGCATCGCCGCGTAGGCGGCGTCCACGTCCTCGACCTCGACGCTGATGTCCGGGGCCACCGGCCCCGTCTCGTCCTCCCCGGTGTAGAGGCTGATCTGCGCGGTGGGGTTGGTCGGGGAGACGAGGGTCATGATCCAGCCATGGTTCATGGCCTCCTCGAAGCCGAGCCGCTCGTAGAACGCGCGGCTCGACTCCCCGTCGCCCGTGGGGATGTTGGGCACGACGCG # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.62, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 348119-347109 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000002.1 Streptomyces mimosae strain 3MP-10 NODE_2_length_503952_cov_51.147660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 348118 30 100.0 31 .............................. AGCGGTACAACGAGTGCCGCCCCACGGTCTT 348057 30 93.3 31 ............................TC AGGTCTGGCTCCGTGGACGCATCTCCGCTGC 347996 30 96.7 32 .............................T GGTTGACGTACCGGATGACGTACGCGGCGGGG 347934 30 96.7 32 .............................C GGTGACGCCGCAACGTCCCAGCGTCGAGTTCG 347872 30 96.7 31 .............................A GCATCCGGCGTCAGCAGCTCCACCCGATCGT 347811 30 100.0 32 .............................. CCACGGGCCGCCATGTGCGGAACGCCCGCGCC 347749 30 100.0 31 .............................. CCCTAAGGCTGTGGATCTTCTCCGGCGGGTT 347688 30 100.0 31 .............................. GCCCCGCGCCGGGGCGGCGGCGGGGCACAGT 347627 30 100.0 31 .............................. TTGGGTCGCCCGCGCCGTCGGCAGCCCAACC 347566 30 100.0 31 .............................. AGCGCACCAGCGAGAGCTACGCGCCGCTGGA 347505 30 96.7 32 .............................T CTGCCGCCGCAGTGCGGACGTCCTGCGCCCAC 347443 30 96.7 31 .............................T CCTTCAGGCCGGCGGCGATGGTGAGCCACCG 347382 30 96.7 31 .............................A GGATCAGCGTGGGCCGAGGCCAGGAGACAGG 347321 30 100.0 31 .............................. GGTGCGCCCGCCGCGCACCTCGGCACCGGAG 347260 30 100.0 31 .............................. AGGCACGAGAGGCACGAGGGAATCTCCAAGA 347199 30 96.7 31 .............................C GCCCATAAAACGTCCCCCGTCTCGCCTGTGG 347138 30 90.0 0 ............T.........C...G... | ========== ====== ====== ====== ============================== ================================ ================== 17 30 97.7 31 CTGCTCCCCGCGCGTGCGGGGATGTTCCCG # Left flank : GATCGACGCGGACGGACCGATCTGGTGACGGTCATCATCCTCGCGAACTGCCCTGCCGGGCTACGTGGTTTCCTCACCCGCTGGTTGCTGGAGATCTCCCCCGGCGTCTTCCTGGGCGCGCCCAACGCGCGCATTCGGGACATCCTCTGGGAGGAAGTGCGCACCTACTCGGGCAAGGGCAGGGCGCTCCTTGCGTACCAGGCCGACAACGAGCAGGGCTTCAGCTTCAGAACCCACGACCACGCGTGGCACCCAAAGGACCACGAGGGCCTGACCCTCATCCACCGCCCGGAGCGGTCACCGGATACGCCCGGCACACCTCAAGCTGGGCCACAACCGCCCCGGCAGGGGTGGAGCAAGGCCGCTAAACGCCGCCGCTTCGGGAGGTGAGAGGTTTGACGAGGTATGGCGGAGAAACACCCGGTCTACCCCTTATGGGGGTTCAAGGTAAAGTAAGTAAAATCCGGTCCGCCCGCCGATAAACCCGCAGGTCACGAACT # Right flank : AGCTGTCCGCCTCCGGCGGTTCATCCGCCGGGGCGGCGCAGGCGCTCCCGGAGGGCCTGGGCGCGGGCGTCGTGCGCTTCGCCCATCAGCCGCAGCGCCTCCGCGCGCCGCTCCCGGGCCGCCGCCGCGTCCGTTCCGGCCAGCGCGTCGGCCAGCGCGGCGAGCGCCAGCGCCGCGTGCCACCCGTCGCCCAGCCGCCGGTACACCTCACCCGCGCCCTGCCAGGCCAACGCCTCCCGGCCCCGGTCACCGTACCGCCGGTGCAGCGCCGCCGACCGCTGGTAGGAGACCAGGGCCTCCGCCGGCTCGCCGGCGGCCAGTTGGGCCGCGCCGAGCGTCAACAGCCAGTAGCCCTCAGGCCGCAGGTCGCGCAGGTCGAGCGCGATCCCCACCGCCCACCGCGCGGCGTCCAGCGCCGCCGCCGTCTCGCCCTGCTCGCGCAGCGCCTCGCTCAACACGTGCAACGCGTTGCCCTCGCCCCGGCGGTCGCCCAGCGCGCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGTTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 457338-457488 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000002.1 Streptomyces mimosae strain 3MP-10 NODE_2_length_503952_cov_51.147660, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 457338 29 100.0 32 ............................. TGCCAGTGGCCGCAGGCCCTCCAGGGAATGCC 457399 29 96.6 32 ............................G TCGCAGGGGGAGGTCGCCCGCCGGCTCGGCAA 457460 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : AGGCCGGCGAAGCCGGTGCGCGCCACGCACGCCCCCAGCCGCCGGCCGACCCCCGAACTCGGCGCGGTCCCCGCGCCCGGAGGGCACACACCGCACTCCCGACCACCCCTGGCGGCAACGAACCCCACCTCCCGGAAGCCGCGCCCCCCTTCCCAGCCAGCCTCTTGCCGGTATTCGTTACGCCCGCACCCGGCCGATCGTGCGCCATCTAGGCCCGGCGTCGTAGCCCGCGCCAGAGCCTCCACCCCCGTGGGCGCGACTCGTCGACCAACAAACGACCAGTCGGGCTGCCCCGCACCGGCCACCGGCCCGCAGCCTTCGCCTTCCAACGCGCCGGGACCGTGCCTCCGGCAGAGGCGCCGGCGAACGTCCCACCCCGATATCGTGGCCACCGTCAGGCAGTTGGGCACACCGGAAAGGGGCTTTCGTCCATGATGCCGGTTTCCGCGAAAGTAAGTAAAAACCGCCCACCCCACCGATAAAACCCCAGGTCATTTGCT # Right flank : CGGCGGGGGCCCGTCTCGGGCGTGACCCGGGGCCGGTGACGGTGGTTCTGGTCGCCCGGCTGATTCCAGGGGCCCCTTCCTTCCAGCTGCCCGTCCGGAAGTGAACAGTTCGTTCAACGCCCCAAGCCGCCGCCCGTTCCGTCACTCCCAAAACACCCGGCCACCCCCGGGGCCTCCAGGCCCCCAGGGCCTGGGGCCCCTCCCGGGCCTCCGGCCCGCTTCCGCTGTCGCTCCAGAGCCCGTCTACCGTCCTCGCCCACGGTGAAGGGCGGGCCCATCGTCCCGCACCCCCGATGGTTGAGGAGAGATCACCGTGACGGAACCGCAAACGCGCGCCGCCCCCCAGCCGCTGCCCGGGTTGAAGGGCAAGAGCGCCCTGGTCGTCGGCGGCACCCGGGGCGTGGGCCGCGCCGTCGCCGAGAAGCTTGCCGTCTCCGGCTGCGATGTCCTCGCCGTCTGGGTCAACTCCGCTGAGCACGCCGCCGAGTTGGAGGAGGAGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1943-692 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000030.1 Streptomyces mimosae strain 3MP-10 NODE_30_length_47604_cov_46.828296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1942 29 96.6 32 ............................A CTCCCGGCCAGCGGGCGGGGACTGGAAGCGCG 1881 29 100.0 32 ............................. GATAGGCAAGACTCGCCCCGCCATCCAGACCG 1820 29 100.0 32 ............................. GGCGCAACGCCCATCCGAGCTGCCGTGCTGCG 1759 29 100.0 32 ............................. GTCCCGTTCGGGCGCAGCGCGCGGCGTAGCCG 1698 29 100.0 32 ............................. GCGAGAATCGGGGGGGTGTCGGGCCGGCGGGA 1637 29 100.0 32 ............................. GCGTCACCGTCCGGCACCACCAGGGTCGTGTC 1576 29 100.0 33 ............................. AGCACGATGCGCACGCGTGTTGCCACAGGCGGT 1514 29 96.6 32 ............................A GCACGATGCGCACGCGTGTTGCCACAGGCGGT 1453 29 96.6 33 ............................T CATCAAGCGGGTAGGAATGTCGGTTCCTGCCCG 1391 29 100.0 32 ............................. TGGTGGGCCGCGCTGGCCATCGCGCTGGTCGC 1330 29 100.0 32 ............................. GAACAGGACATCGAGGCCGCGATCGAGGAGGC 1269 29 100.0 32 ............................. GGGGTTGCCTCCTCTGTTGGTTGGGGGAGTCC 1208 29 96.6 32 ............................T GCTTTGCCCGTCCGGAGGGGTGATGTCGGCTG 1147 29 100.0 33 ............................. GTTGTTCTTTGGTTTCCCAGGCGCCCGCCAGGG 1085 29 100.0 32 ............................. GACTGCTCGACGTCGCGGGCGATCTGCACGAG 1024 29 100.0 32 ............................. GGGGACGCCAGCATGGTGTCCACGGAGCGCCC 963 29 100.0 32 ............................. ACGGCGATCAGGCCGAGCGCGCCGGTCCGGAC 902 29 100.0 32 ............................. ACTGGGAGAACGGCCGATGTTCGCGCGACCTT 841 29 100.0 32 ............................. GTGCGGCCCGGCTCGGAGGGGTAGTGCCAGGC 780 29 89.7 30 ........T................A.G. GGCCGTGCAGCGGACGTCCTGGCGGCAGGC A,G [755,757] 719 28 79.3 0 ........T.............-..AGAG | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.9 32 CTCCTCCCCGCACGCGCGGGGATGTTCCC # Left flank : GGTGGAGGTCAGCCGCGACGGGCGGCGGGTGTACCTGACCAACTCGCTCTACGGGTCCTGGGACGACCAGTTCTACCCCGACGGCGTCGGCTCCTGGCTGGCCAAGCTGGACGCGGACCCGGAGCGCGGCGGCCTCACCCCCGACGTGCGGTTCTTCCCTCGCGACGATGCGTTCTCCGGCCTGCGCGTCCACCAGACCCACCTCGCGGGCGGCGACGCGTCCTCGGACTCCTACTGCTACCGCTGAGCGGCTGCCGGCCGCGAGGCCGGCAGCCGCGAGGCGGACGGTCGCGAGGCCGTGGGCCTCGCGGCCGATCGGGGCGCCGGGGCGCCCTGGGGGCGCCGGCGGGGCTGGCCTGCCCCGCTAGGCTCTGCTTCGGGAGAGGGGAGGAACGTCGATGAGGTGTTGCGGAGCAGCGACCACACGGGCCGCGACGACCCTCAAAGGTAAAGTAAGTAAAATCCGCCCCCACCGCCGATAAACCCGCAGGTCACGAACT # Right flank : GAGCTGACCTGGGGTTTTATCGGCGGGGTAGGCGGTTTCTACTTACTTTCACGGAAACCGGCATCGTGGACAAGAACCCTTCCCGGTGTGCCCAACTGCCTGCCGCTAGCCACGATATCGGGGTGGGTGCGGGGTTTGTCTGCGGGCCGGTGGCCGGTGCGGGTCAGCCCGACTGGTCGCCGTCCCTCAACGAGACGCGCCCACAGGGGTTGGGGCTCTGGCGCGGACCACGACGCCGGGCCTACATGGCGCACGATCGGCCGGGTGCGGGCGTAACGAATACCGGCAAGGGGCTGGCTGGGAAGGGGGACGCGGCTTCCGGGAGGTGGAGTTCGTTGCCGCCGGGGGTGGTGGGTGATGGCGACCGTGCCTTCCGGGCGCGGGGACCGCGCCGAGTTCGAGGGTCGGTTGACCGCTGGGGGCGTGCGTAGCGCGCACCGGCTTCGCCGGCCTGCCCCGGCATGTCGCCCGTCTCGGACATGACCGATCGTCGGACGACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACGCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37704-37062 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000031.1 Streptomyces mimosae strain 3MP-10 NODE_31_length_44734_cov_45.600825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37703 29 100.0 32 ............................. AGCACGGTCACGGTGCGGACGGCCACGGCTAC 37642 29 100.0 32 ............................. ACCCCCTCCATCGCCACGCCATCGCCTCTCTG 37581 29 100.0 32 ............................. GACTGGGCGTTGTGGGAGGAGTTCCACGGCTG 37520 29 100.0 33 ............................. TCGGCCGCCTACCAGCCGGCGGTGGACTTCGAG 37458 29 100.0 32 ............................. CATGTCGGCTCCCGAAGTCGCGGTTGCGTATG 37397 29 96.6 33 ............................T AAGGGCGTGGCGAAGTCGGCACACCAACAGGGC 37335 29 100.0 32 ............................. CAGTCGGCCAGGGGGTGGACCTCCAGGCCCAG 37274 29 100.0 32 ............................. GGCATCGACGTCGGGACGTTGCGCGGCGACCT 37213 29 96.6 33 ...T......................... GGTGGTCTGGGTGCCGGCGCCGATGATGAGGAT 37151 29 93.1 32 ...T.......A................. GACCTCAAGGCCCGCGCGAAGGCCCTCGCCGC 37090 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GGTCTTCACCGGCGTCACGGACCCGGCGCTGCTGCTCGCGGCGGAGCCGCGACACCGGCCGACGTATGTGGCGGCGGACCTGCGGGGGCTGCTGACGCCGCAGGCGTCCGTCGCCCCGGAGGGGGCGGGGTTCCGGTGCGGTGGATGGCGGGCGGAGGTCGTTGACGGCCGGGCCCGCCTTGCGCCTGGCGGCGGGGCGTCGCCTGGCGGCGGGCCTCGGGACGGGGCGTCGCCTGGCGGCGAGCCCCGGGATGACGCGTCGCCTCGCGGCGGGCCCCAGGATGACGCCGGCCGGTTGGACGGCCTGCGGGCGCTGTGCGCGGCGGTCTGGTCCTCGCGCGAGCCGCTGCGCGCGGAGGCGTATGGCGCTGCGCTGGCTGAGCTGGGGTGGTGACGGGGCTTGGCTGGCTGGGGAGTTGGGGGCGGGGCTGGTTCTTGGGCGGTAGGTAAAGTTGAGTAAAGGGAGGGGGAACGGGGGATAGAACCGCAGGTCGCGAACT # Right flank : CGGCCGAACCGACGTGGTGCTGGAGGCGGGGGGCGCCCTCCGCAAGTGCCTGGGCGCCCCGAGCGGGGGCCGATTGGACTCGAATCGGCCCCCCGTTCGCTCCGCGCAGCGGGAACGAGCCCTGCCGCCCCGGCAGGGGTTCCCCCGCCGGCCCCCGGGGGCCGGCGGCGGGCCGGGTCGGCACCGCCCCCTGGGGCGGTGCCGTCCGGTGGGGCCGCTGCGGCCCGAGCAGATAGGTTCGGGGTATGGGTGCAGCGGAGTCCGAAGAGGCCGGGGCCGAAGTCGTCGACGACGGGCCGGAGCCGTTGGGGGTCGGGGTGGCGTCGACGGGGCACGGGCCCGTCGACGCCGTGTTGGCGCGGCTCGCCGACGTTGACCAACTCGGTGTCGGCGGGCATCTGGAGGTGTACGAGGATGTCCACGACGGCCTGCGGCGGACGCTGGCCGCGCTCGACGAGCAGCAGCAGCGACCACCCGGCCCGCCCGTGGAGCGGGCCCCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 161744-162076 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000004.1 Streptomyces mimosae strain 3MP-10 NODE_4_length_484291_cov_46.010920, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161744 29 100.0 32 ............................. TGGGGGGAGAGCGCGTTGCCGGATGTGGCTTC 161805 29 100.0 31 ............................. CGTCGTTGTGAGGGGAGCGACGACGAGTTGG 161865 29 100.0 32 ............................. TTCCCTCCGCCGATATAGAGGCCGACGTGATC 161926 29 100.0 32 ............................. CTCGGCCGAGTCCTCCCCGGTCCCGCACGGCT 161987 29 100.0 32 ............................. CCCACGAAGCTCCAGAAGAGCGGCAGCCCGGA 162048 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : AGGGTGAGTACGTCGAACGACGATTCCATGACGTCTCCCTTGGCAGGCAAATTGAGCTATGCCGACTCAATGCCGGGAGGGCGGGGGTTGTTCCCCGGGGTGCGGGGCGTTCGCTGTCGGCGATCAGGCGGTCGGGGCTGGACGGGCCTGGCCTGGGCGCGGCCTCGGGAGGCCGGGTACCCGGAACGCCGGCGGCGGCCACCGTTGTTCCGGAACGGGGCGGCCGTCGAGGGCGCGGGGCGGGCGAACCCGTTTCCGTTCCGGGGCGTTCGGGCACCCGAGGGCGATCGCTCGGCGGGCTGTCGCGCAGCGACAGGACGTCGCCGGCCTGCGCCCGGCCCCGGCTACGCTGACGCCGTCAGGGCGGCGCGGCGCCGCCTCGGAAGGCGGAGCCATCGGTGAGCCGTCACGAAGCAGTGACCACTCGGCCCTTGTCGGGCCCAAAGGTAAAGTTGAGTAAAGTCAGCCCCTGCCCCCGATAAACCCGCAGCTCACGACCT # Right flank : CGCAGGAGGCTCGTATGTTCCGCGCCATCGCCGACGTCCTCCGGGCGGTCGGCGCCGTCAGCACGCTGGTCACGCTGCCGTTCCGGGCGCTCGCCCGGCTCCTCGGCGGCGCTTCGAGCAGCGCCGGGGGGCCGCCGCTGTACGGGCCGCGCGGCGCGGCCCGTACCGGCTACAGCTCGCGCAGCGCGTTCCGCAGGAACGCCTCGGTCTCGACCGGCGGCATGGCCTCGACGGCCAGCCGGTTCATCACATGCCGGTACTGCTCGACCTCGCCCGGCTTGTCCGGATACGCCCCGCCGGTGAGCTGCTCCAGATAGACGACGTCGGGCAGTTCGCCGCCCGGCGGCCGCAGCACGGTCACCGGGCCGGCGATCGCCGAGTGGGCGCCGGCCGAGAACGGCACCACCTGCACCGTGACGTGCGGCAGCTGGGAGACCTCGATCAGATAGGCCAACTGCCGCCGCATCAGCCCGCGTCCGCCCATCGAGCGGCGCAGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 241290-241562 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000004.1 Streptomyces mimosae strain 3MP-10 NODE_4_length_484291_cov_46.010920, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 241290 29 93.1 32 C............A............... GTCACAGCGCCGATCCAGCTGTACGCGGAGCT 241351 29 96.6 32 .............A............... TCCGCACCCGCCTCGCCGCCCTCGGCGTCCCC 241412 29 100.0 32 ............................. TTGCGGGAACCTGCCCATGGTCTCGGGCGGGG 241473 29 100.0 32 ............................. CCGCCCGGGGCGGCCGCCTCGGTGGCGACCGC 241534 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTCTTCCCCGCACGCGCGGGGGTGGTCCG # Left flank : CCGAGCTGCGGGGCGAGGTCGCCGAGGCGTTCGACCTGCACCGGAGGGGGCTGGCCGCCGCCCGGGAGAGCGGCGACCCCAGGGCGGTCGCCCTCGCCCTCGAAGGACTCGCCGGGGCGTATGCCTCCGGCGGTCAACCGGTGGCCGCCGCGCGGCGCCTCGGCGCGGCGGCCCGCCTCCGCGAGGCCGCCGGCGCGCCGCTGCCGGCGGCCGAACGCGGGGACGCTGGCCGCGTGGCAGCGGAGGCGCGCGCCGCCCTGGGGGCGGCGCGCTTCGCGAGGGAGTTCCGGGGGTGCCCTCCGGGCGGGCGCGGGAGCGACGCCAACGCCGTTGTCAGTGCCGGCGGTTAGTTTTGAACGACGGTCGGTGACGGGCGTCGTGGAACGGAACGGGGGGACAGGAGAACGGGAGGCGGGATGGTGCGGCACGTGGTGAACTGCGGTTCGGTGTGGGGAGGTCAAGTAATGGCAAAGCGCATCTGACGCCGCAGGTCACGAAGT # Right flank : GGTCCGGCTGCGGTTTGCAGCCGGTCCCGGCGGTGACGGGTTGGGGGCGGCCCTGCGGTCCCGGGCGGGTGCCTCGGCCCGGGACAACTCCTGTGCGTCGGGCATAGGTTGACCGTCATGGAGATCACCGTTGACCGCACGAGCGTCGCGGCGGGGGACGACGCGCTGCCGCATGTCAGGACCCTCGACGTGCCGGCCGATGCCTCGTTGGGCCGGGTGGTCGCCGGGTTGCTGGCGGACCGCTACCTGGCCACCGTCGCCGGCGGGCGGGCGACCTGGATTCTCACGGTGGGTGGCGAGCCGGTGGGCGTGGTGGCGCAGCAGTGGGCCGCACCCCGGTATCTGGTGGACGCCGACCGGCCGATCGCCTCGTTCGCCGCGCCCGAGGCGCCCGAGACCCCAGACCCCGGCGTCGCGCTGGTGTTCCGCTACTGGAAGCAGCACGATCCGGACGGTGTGCTCGCCGCGCTGGCTGCCGGGCGCTGGCCGGCCCGCTGAGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACGCGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 120366-120638 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000007.1 Streptomyces mimosae strain 3MP-10 NODE_7_length_310773_cov_48.338314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120366 29 100.0 32 ............................. AGCTTGGCGACGCGGGCCACGACTTCCCTGGC 120427 29 100.0 32 ............................. CAGCGATCGAGACCGACAGCGAACCCATGGCC 120488 29 100.0 32 ............................. CGAACCGAGGCGCAACGCGCCTACACCGCCGG 120549 29 100.0 32 ............................. GTCCATGCGGGCCGCCACCAGGGGCGGGTGTC 120610 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGGTGGTGTTCGACCTCCAGGAGGGCACCGGCGACTGCTTCCCGGAGACCGAGGACTCCAACCCGGTCCGCTTCACGGCGATCACCGACACGGGCCGCGCGTTCGGCACGGCCGAACCCCCGGACGACCCCTTCGGCGACATCCCCCTCCAACTGGACCTCGCCACGGGCGAAATCACAGACTTCGCCGACCAGGACCCGCCCCCCGTCTTCCCCACCACCGACATCGACGGCTACGGCATCTTCACCGACGACCCGGACTACCCGACGGTCACCGTGATCTACCCACCGGCCGAAGGGGGAGACGCGTGATGCGTGGTGCGTGAACGAGGAACGATGGGGGAGTGCGGGCCTGGCAGCGCCGGCGAAGAGCGACGAGGAGAGGACCTGCCACGGATGCTGCGGATGGGTGGGGCGTGGGGTGCTTCGCCCCATAGGTCGCGTTCCCAAGAAGTAAGTAAAATCCGCTTCGAGCGCCGATAAAACCCCAGCTCACGAACT # Right flank : CCGGGCGTTCGTGCATTGATCAACTCGGATGCCCCGGCGTCCCCTTGCACACGCCAGACCCCCCGCCCCCGGCGCCGCCCAGGTGCCAGGGCCCCGCGCGGCGGCCCCCGCCCCGGCGGCCCCGCGCCGGCGGCGCCCCCTGCGCGGCTCGTGCCCCACGGGCACGAGCCGCTTCGCGGGCCCCGTTCCCGACCGGTTATGCGAACGGCGTTCGACAGCTAGCATCGCCGACGGCATGGGAGCGCTCCCGCGCGTTGCCTCCCCGTGCGTGCGGCGGACCGAAGGCGTGGTCGGTGCCGCCCCGCCGGGGAGGCGACGCGCACCCCACCCCAACCTCACACCCCGGCAACGCCCGCAACCCCGCAACCCCCGCACCAGCCCAACCCCCCACCACCCCCAACCCGGAAGGGGCGCACGTGAAGAGCCGCTCACGACCGTTGTTGACCGTACTGGCCGCGATACTGGCCGTTCTGGGCCTGGCAACCCTGCCCGCCCTCTCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29927-30260 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000015.1 Streptomyces mimosae strain 3MP-10 NODE_15_length_228103_cov_46.257071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29927 29 100.0 32 ............................. GCCCGTCACATAGCGCTTGCGGTCGGCGAAGT 29988 29 100.0 32 ............................. GCCGGCGCTTCGTCCTGGAGCGCGCGGAGCCC 30049 29 100.0 32 ............................. ACCCCAACGGGCAGGGGCTGCCCGGTCCCGAA 30110 29 100.0 32 ............................. CCGGTGAGTGGGTCACGGTGTGTACTGCCCAG 30171 29 100.0 32 ............................. CGGCGGGCACTCCCGCCGCACGAGATGCGGTT 30232 29 89.7 0 .....................G....T.T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CAGGGGTTCACTCATGCCGACTCGTCTCCGTTCTCCAACAGGTCTGCGATGGCGGTGGTGATCCGCAGCCCGGCCGCGTCTTCGAGTCACTATCCGCCGTGGGCGGTCACAGAGCAGTCGAAGGCGCCGAAGTTCAGCCCGAAGGCGGCCAGGAACCGTACGAGCGCCCGCCGTATCACCTCCGGGCCGGCAACCGGTCTGGTTCGCGGCAGACCGGCGGGTTACGCCCAAGACCGGCATCGCCAAGGCGACTTCGACAACCTCCGATAGCCCCAAGACCACCGCCCCGACCAGCCAGCAGCTTCCCCCGCCCCAACAGGCCGAGCGGGGCGCCCCTTTCACGCGGAACGCCCTCGCCCGAACACCCCACCTCGGTATGGTGGCCGGCGTCGAGCAGTGAGGAACGCCAAGGAGGGGAATGGGTTTTGTCCACGATGCCGGTTTCCGCGAAAGTAAGTAAAAACCGCCCTCCCCACCGATAAAACCCCAGGTCAGCTTCT # Right flank : TCTTGGCGGAGGCAGCGCCCGGGGCTGATGCCGCAGTTTGCCGGGTGTCAGGCTCGGGTCACGCTCAGGTGGGGCGTTGTCCGGCGGGGGCGCGGGAGGCTCCCACCTCCGGGCGCGCCCGCTGCGGGAGTCGGCGGGGCGCGGACTACCAGGACGGCAGGCGATGTTCGCGCGGCAGCGTGGTCGTTGACCGAACCCCGCGAAGCACCGCACCCTGCAACGACCAACCTTCACCGTCCCCGTGAGTCGCCCGACGATCGGCCACACTCCGGGACGGGCCACGCGCCGCAGCAGGCCGGCGAAGCCGGTGCGCGCCACGCACGCCCCCACTCACCAACCGTCCCTCGAACTCGGCGCGGTCCCTGCGCCCGGAGGGCACGCACCGCCATCACCCACCACCCCGCCGACAACGAACCCCACCTCCCGGAAGCCGCGCCCCCCTTCCCAGCCAGCCCCTCACAGTCATTCGTTACGCCCGCACCCGGCCGATCGTCCGCCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61246-61457 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000015.1 Streptomyces mimosae strain 3MP-10 NODE_15_length_228103_cov_46.257071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61246 29 100.0 32 ............................. TCCGGCGTCACGCCGACGATCTTGGAGCCGGT 61307 29 100.0 32 ............................. GGAGAGGAGACCGCCGCCATGCGCGAACTGGA 61368 29 100.0 32 ............................. CGGTACGGCGCGCCGGGTTCCCCGGTGGCGAG 61429 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TGCGTTGTTTACGGGTCGTTTGGTGGGTGGGGGCGTGCGTAGCGCGCATCGGCTTCGCCGGTCCGCTGCGGCGCGTCGGGCTTTATCGCGGGGTGGGTGACGGTGTTCGGGTTGGGCGGGTGGTGTCGTGGGGCGTGCGGTCAACGACCACGCTGCCGCGCGAAGATCGCCTGCCGTCGGGGTGGTCCGCGCGCCGTCGACTTCCGAAGGCGGGCGCGCGCGGGGGTGGGAGATCTTTTCTCTAGGTGCCCGTTCGGAAGTGAACGGATCGTTCAACACCCCAGGCCCGCCCGACCCTTGCGCGGACGCCGTCACCCGCAGGGCGCCCGGATGTGGTGCCGCCCGGGTCTGACAGCACGGCATGACGGTCCTCGGTATGGTGGCTGGCATCGCACAGCGAGGAACGCCGAGGAGGGGATGGGCTTTTGTCCACGATGCCGGTTTCCGCGAAAGTAAGTAAAAACCGTCCTCCCCGCCGATAAAACCCCAGGTCAGCTTCT # Right flank : CGGCGGCCTTCCGCCGGCCGCGACGACCCGAACACCGTCACCCACCCCGCGATAAAGCCCGACGCGCCGCAGCAGACCGGCGAAGCCGATGCGTGCTACGCACGCCCCCACCCACCAAACGACCCGTAAACAACGCACGGTCCCCGCGCCGCCGGCTCAGTAGGCCAGCGCCAGCACCTCGTTCTCCCAGGTCTCCAGCCGGTGCGGCCCGGTCCCCGCCGGCAGCGCCGCGCGGTCGCCGTGCACGGCCTGCCGGCTGCCGTCGGGCCGCACCAGCGCGGTGCCCTCCGCGTCCAGGGCCAGCAGGCCGTCCCCGACCCGCAGCAGCAGCGGCGCGCGCGGCCCCGCCGAGACCGCGACCCGCCCGTCGGCCAGCGCCGCCAACACCGCGTCGGACGAGGCGTCCTCGGCCAGCACCCAGGTCGTGGGCCGGCCTGGCAGGGCGTCGTCGCCCAGCCGGTGGAAGTCGCTGCCGCCGAGCGCCACCACGTCGGGCCGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 179670-179820 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000009.1 Streptomyces mimosae strain 3MP-10 NODE_9_length_294128_cov_49.652392, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179670 29 100.0 32 ............................. CACTCGTCGCGGTGCTTTCGGTCCGCGCTCCC 179731 29 96.6 32 ............................T CGAGACCCACAGGCGTGGGCGAGGCTCGGGCG 179792 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGCTCGTCCGGCCCGACGACCGTCCGCGCGTCGGCCTCGATGTCCTCGACGGTGAGGAACGCGCGGACGTCTGCGCCGCCCGCGCTCATGGTCCACCCCCGGTCGTCCAACAACACCACCCGCCGCCCGTCGGACAGTTCGGCCTCCAGCCGGGCATCCACGGACAACTGCCGGGCGGTGCTGTGTCCGGCGTTGAGTTCGACGAACGTGACGAGGCGGGCGAGGGTGGCGGACACGGGGGTCTCTCCTGGGGTGGTTCGGGTTCGGTGAGGGTAGTCGGTGGGTGGGGGCCTTCCGGGGGGCGCGGCGGGTTGGTGGCCGGAAGCCCTCTGGTTCTACCTCACCGAGGCCGACGCCACGACGTCCGCTCGCTAGGCTGAGACGAGAACTTTCGGATGCCCCAAGGGGTGGTGTTTGGAGAGGGTTTGGCCGCTATGTCGTGTTCTCTGAAAGTGAGTAAAAACCGCTTCCCCCGCCGATAAAACCCCAGGTCATCTCCT # Right flank : CCTTATCGCGTGCTCCCGCACCCGGACTTACGTTGTGTGCGGAAGCGTTCACCACGGGAGGTCGGTCACGTGAACACCATCGCCGCCGAGGGCAGTGCGATGGAACAACTCCTCGCACGGGTGGCCGAGTTCCTTGGCCGCCCGGTCTCGCCCGAGTGGGAGAACGCGTTCCGGGCGGTGCCTCGGCACCGCTTCCTGCTGGATCGGATCTGGCTGCGGGACGGGCACGGCGGCTACGACATCTGCGACCGGGCCGCGCAGCCAACGCGTTGGTGGGCGGCCGCCCATGCCGACGCGCCCGTAGTGACGCACGTGCTCACGGAAGCCGACGGAACGCGGTGCCCCCTGTCGTCGGCCTCGGCCCCGGGAACGGTTGTTGCCATGCTCGAAGCGCTCGACGTGCGGCCCGGGACCCGCGTGCTGGAGATCGGAACGGGCACCGGCTGGAACGCCGGCCTGCTCGCCTCCCGGGCCGGCGACGCCGAGGTCGTCACCGTAGA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181188-181400 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLY02000009.1 Streptomyces mimosae strain 3MP-10 NODE_9_length_294128_cov_49.652392, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181188 29 100.0 32 ............................. GCCCCTCCTCCACCTCGATGCCGACCGATGTC 181249 29 100.0 33 ............................. ATGGACGAGCCCTGGGCGTGGACGACGGCATCG 181311 29 96.6 32 ..................G.......... TCCGACTACGCGCGGTTCTGTGCGGCCGCGAG 181372 29 96.6 0 ..................G.......... | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 CTGCTCCCCGCGCACGCGAGGATGGTCCC # Left flank : CCACGGAGCTGTCCCCCTGGGCGGTGGCTGGCGAGGACTACCAGGCCCAGTTCGTGATGGGGCTGCTGGTGCCGGGCGTCTGGCACGCGTGGGAAGCGGGTAACCAACGGGCGGGCACGCACGCGACGTTGTGGGTGCGGGCGGAGAACGACCCATCCGCCGCCCTGGTGGAGGTGGCGGCCGGAACCGGCCACACGACGGTTCGCCAGTCCGGCCCCCGCCGCCTGTGGGACGAGATCAGCGCCGCTTACGGCTGGTGGCACGCCGCCGGCTCCCCGGACATGCCACGCTTCGGTTTCACCTGCGGCGGGGACGGCACCACGACGGCCTGGCTCGACACCCCGGAACGGCAGCTCCCGGAGCCGACAACTCGCTAGTCTGGAATGAACTTCGGATGTCCCAAGGGGCGTTGTTTGGAGAGGGTTTGGCCGCTATGTCGCGTTCTCTGAAAGTGAGTAAAAACAGCCCCCCCTCGCCGATAAAAGCCCAGGTCATTTGCT # Right flank : CCTGTCGAGCGTCAACCACGGCGGATTGTCGTCTGCTCCCCGCGCGTAGGGACAGTTCCCGCAGGGGGCTCTCTTTTGGATCTTCGTGGGGCGGTGAGGGGTGAACGGGGTGGGGTGGGTGCGGGGTTTGTCTGCGGGTCGGTGGCCGGTGCGGGGCAGCCCGACTGGTCGTCGTCGGTCGACGAGGCTTGTTGTGTGGTGGTTGGGGTTGTGGCGCGGGCTACGACGCCGGGCCTAGATGGCGGACGATCGGCCGGGTGCGGGCGTAACGAATGCCGGCAGGAGGCTGGCTGGGAGGGGGGCGCGGCTTCCGGGAGGTGGAGTTTGTTGCCGTCGGGGTGGTCGGTGATGGCGGTGCGTGCCCTCCGGGCGCGGGGACCGCGCCGAGTTCGAGGGCCGGCCGGCGGCTGGGGGCGTGCGTGGCGCGCACCGGCTTCGCCGGCCTGCCCCGGCATGTCGCCCGTCTCGGATGTGGCGGATCGTCGGGCGACTCGCAGGCA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGAGGATGGTCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //