Array 1 35674-36701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLC010000004.1 Anaerostipes hadrus strain DFI.4.140 CNNPADLH_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 35674 32 100.0 33 ................................ ATCTAACAGATATTTGCTTTCTCCTCCAGCAAG 35739 32 100.0 36 ................................ AGAAGATGTCAGAAAGTCCATGGAAGATGAAACAAC 35807 32 100.0 33 ................................ TCAATCAACGGAAGTGATGCACCACCAGGATTT 35872 32 100.0 33 ................................ AACATCTCGTAGCTTTCCGTACTGACCTCTTAC 35937 32 100.0 34 ................................ TGCCATTGTTTCCTCCTAACTTATCGTAATTGTT 36003 32 100.0 34 ................................ CTATCCTCCTATCATTTTTAACAGTGTTTTATAA 36069 32 100.0 35 ................................ TTCTTAATTGGATCAATAAATGGTCGTTTTGCCAT 36136 32 100.0 33 ................................ ACTTTTCCTCCGGATTTCATAATTTTGAATGCA 36201 32 100.0 34 ................................ AAGTGAGGTTGTAAGATTAAGGTTCCCCAAATTT 36267 32 100.0 35 ................................ AATGTGTGGACTTACAATAGATTCAAGGCTGAAAG 36334 32 100.0 35 ................................ CTGTCACAAGTTTTGCAAAATCTTCTACAGATTCC 36401 32 100.0 35 ................................ TATACAACGCATCGGTTGTACCTTGCTAAATACCC 36468 32 100.0 37 ................................ AATGTAATGAGCAGGAATCCATGTTGCACCAAGTTGT 36537 32 96.9 35 ........T....................... AAATCATACAAAGTAAAAGTAACTGCTTCTGCTCT 36604 32 100.0 34 ................................ AATTTTAAGACATAATCCGACCAATTCCCCACTT 36670 32 75.0 0 .............CAA..A..CA....C..T. | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 98.2 34 GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Left flank : ATCCAGCATTTTTGTGGAAATGAGGTGATAAAATCAAATGTTAGTATTAATTACTTATGATGTAAATACAGAAACAGCAGCAGGGAAAAAGAGACTGAGAAAAGTGGCAAAGCAATGTGAAAATTATGGAAGGCGAGTACAAAATTCTGTATTTGAATGCATTGTTGATAATGCACAGTGTGTGATGCTAAAAGCACTCTTAAATGATATCATAGATGAAAATGTGGATAGCTTGCGTTTATATTATTTAGGGAATAAATATCAGACTAAAGTAGAACATTTTGGTGTAGACAGAGGAATACAAGTTGATCAACCATTGATTTTATAGTGATGCGAGGATATAGCAAACATAAAAAGAGTGGGAGATTCGCACTTAAAATATGAAGTAAAAAATAAATTTGTATCTAAAAATAAATAGTATTTGAATGATTTGTAGATATAAGATAAAATTTATTAGTGATATTGAACAAAAAATTAGAAAATTATTGGTTAATATTGCT # Right flank : TATATTTTACTTGGTGTGGGTTATATTAATATTTATAAATTGTCATCAATATTGTAGTAACGATAAGCGGATATACATACAATGGAAGCACAAGAAAGGAAGAAATCAATGAAACGATGTAAAATTACCGCAGTACGGAAAACAGAATATAAAGATCTAATGGAAAAGTATGAAAATCCAATCCAGCATGCCTGCGATATAGAAGAAGGACAAGTATTTATCACAGAAGGATGGAAACGACCAGAAGGATTTTGTGAAAGCGCATGGGAGAGTATTTCACCATTTGTTATGACATTAGCATATGGAGGCAGTGATATTTATGAAGGCTGGATGAAAAACAAAAACTCAGCGATGATCAGTTGCAATGACGGGTTTAGACCGGTAAGTTTTTACATTGAAGTGTTAGATGAGAAAATATATTAACGAGGAGATAAGAAATTTAATATCAACTCATAAATTTCCTAATATCTTCCAAAATAAAAGTAAATTCGATAACATGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1104-475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLC010000053.1 Anaerostipes hadrus strain DFI.4.140 CNNPADLH_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1103 30 93.3 36 C.....G....................... CAAGCTTTCAAGAACTAAATCTAATAAACTTAACTG TAA [1085] 1034 30 100.0 36 .............................. ATTAGTTCGCATCGTTTTGACTGCTCCCGTTGCAAG 968 30 100.0 34 .............................. CACTTAGGAAACTACAGGACAGCCTGATTCCAAT 904 30 100.0 35 .............................. AAATAAGAATTTATCGAACAGATCTGTTTTGACAG 839 30 100.0 38 .............................. TGGCGGAACTGTATAATGTTTAGAAAGGGGTGTAGATA 771 30 100.0 37 .............................. ATGCACCCAGTTTTGTATCATGAATTTCTAAACCATC 704 30 100.0 38 .............................. TGCTTTGAAAAGCTCTGGAAACAGTACCCGAATAAACG 636 30 100.0 36 .............................. CCGATGGCTCTTTCCTTCCATGCGGATCACATTCAC 570 30 100.0 36 .............................. GTAAATGCAAAACATTGCACTGACACTTTTGAAGTT 504 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.3 36 ATTTAAATTCCATTATGATTCTATTAATTC # Left flank : CTGATGCGAAATTGCAGATTTTGTTACCCCAAGTAGCACTGCAAGATCACATACACACATCTCACTCTGTTCTAGAGCGTGTAAGATTTGTACTCTAGTTCCATCTCCAAATAGCTTAAACAAAGAAGCCAACTGGATATAATCATCTTTTGGCTGCATCTTGGATTTCACATCATTCACAATATCCTCATGAATTACATTGCAATTACAAATATAAGACGTTTTTGGCATATATTCACCTCCAAATAATAATAGTTGAACAACTACTCAACTATTATTATACTTATTTTTAAATTTATGTCAATAAGCTGATGTTAGTTCCCCATAAATTTTACAATTAAAACCAGCTCTTTATTCTTTTCTTTATCACATCTCATTTCTGGATTAAACGCTTATTTTAATTATCAGATTTTTCCTTCTAATCTATATTCTTAAGGTTCCAGTTGACTCATTTGGTCCCAAGTGCCTTAAGATTTCCAACCTGTTACATTGAAATCCAT # Right flank : CCCGTCCCAAAATCATCCCCTTATTTAAGCCAAAAAACGTCTCTATTTTGTCGACCTCTTCAAAATTCAACATTTCTTTCTTGTCCCTAATCATATATTTCTGCAACACCTCCTATTTTAGGCGTTTCCGCCTTCTGTCGATCCCCTATATTTTTTGCACTATCAGGGGTCGACAGAAACCCCTAATTTTTCAAGTTGATTTTGTTCGACACATTCTATTATGAAACTTATTTGCTAAATATGCAAGTTAAATACACGCATTCATTATATATACTTTTCGAGCAAACACTATACAGTCATATATGCATCAAATATCACCGTCTGAATAATCCAATTTATCGTCATTTTTATAAAAGTCATGCCCACGCGAGAAAATTTCCGTGGGCATGACGTGGGCACAGCTATTTTTAGGCTTATTTTCAATCAAAACCACCGGCTTAGCCGGTGGTTTGTACTAGCCCTATAAGGGCTTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATTCCATTATGATTCTATTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //