Array 1 354-2014 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTPG01000045.1 Elizabethkingia anophelis strain LDVH-AR107 isolate CIP108654, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 354 47 100.0 30 ............................................... AAGATGTCTCTGGACAACCTTTATCTCTTG 431 47 100.0 30 ............................................... GAAGCGCGCACGCAAGCTACAGAAGTCAAA 508 47 100.0 30 ............................................... AATGAATATTACCGTGATGAAAACTTAATT 585 47 100.0 30 ............................................... ACCACTGAAACACCCGATCACATATGAGTT 662 47 100.0 30 ............................................... CAAACGTGCACGTAAGTTACAAAAGTATAA 739 47 100.0 30 ............................................... AGACCTCATTATCATGCTATTGTCTTTGGT 816 47 100.0 30 ............................................... TTTAATAATTACTTATACTTACAAAAGTTT 893 47 100.0 30 ............................................... TGTCTTGTTGTTATATACTGCGTCCCGATC 970 47 100.0 30 ............................................... AAATATAACCTATATATAGCCCCCAAAACG 1047 47 100.0 30 ............................................... TAGGACGTATTAAATAAAACCTGAGTGAAA 1124 47 100.0 30 ............................................... CAGTATTAGATCTATAAAAAGCTACAAATG 1201 47 100.0 30 ............................................... AAACCACTCTTTATTTTCTTCCGCCAGCTC 1278 47 100.0 30 ............................................... TTCCCGTAAAATGGTAATACAATTTGGTTA 1355 47 100.0 30 ............................................... ACATAATCGCCTCTATTTATTCTGCTCATG 1432 47 100.0 30 ............................................... GTCGTCATAGATCACACATACAGGGCACAG 1509 47 100.0 30 ............................................... GTAAAATAATTCATGCCCGACCTCCCCACT 1586 47 100.0 30 ............................................... TACAGGGATCACCTCATAAATCCGAGGGTA 1663 47 100.0 30 ............................................... GTGTGATAATCAAAATGATGGAGCGTTATA 1740 47 100.0 30 ............................................... TGTGTGACTATCCTGGCAATTATGGGAGTA 1817 47 100.0 30 ............................................... AGCAACAATACCAGGCTATTGAAGATGCCG 1894 47 100.0 30 ............................................... AGAAAGGCAAAAAACCGACTGAAGAACAAT 1971 44 91.5 0 .....................................--..-....T | ========== ====== ====== ====== =============================================== ============================== ================== 22 47 99.6 30 GTTGTGTTATATCACAAAGATATCCAAAATTGAAAGCAATTCACAAC # Left flank : AAAAGCTCCCGAAGCTTCCGTTCAACAGGGTTTTCATCTCGTGTCCTTCGGACAAGACGAAAACTTAGTTATTAGATGATGGCTTTTCGCTTTTTCAGTTTTCAATGTATATCCGCCACTGTCCCAGTAGAGAAAACGCAGAGGTCCACATAAAAAGGGTAAAAGTCATGTTGCCTAAAGCTGGAAAAGTTGCTATTATGTGTATTACCGACAAACAGTTTGGTGATATTGAAATTTTCTTCGCCAGAAATAAAGAAGAACCACCGCCGACCTTTCAACAGTTGGAATTATTCTGATTTTTAAATTCTAAAAAATAATAAAATCCGTTGAAAATCAACGGATTAAATTTTGAGG # Right flank : TAAATTAAGGTGTTTTTATTGTAAATTAGATTTACATAATGAGCCTTTTGTGGTTAACCCTGTTTAGTCGATAAAGATCATTATAAAAAACAAAACCTTTCAGTACTCCTGAAAGGTTCTTTGTATGGTTTAGGTTTTTAATTTTAATCATGCATTTCGCTTTCGACATAGCCTTCATCTTCGATCTGGAAGGTCGTATGGCTAATTTTGAAATTACTGGTCGCCTGATCGGTGAGTATCCGAAGCATTTGGTTATGCGGAATGCTTTGATCGGAGACAACATGGGCGCTCATCGCGTTGATACCAGAGGTTAGCGACCATACATGGAGGTCGTGCAGGCTTTTAACACCCGGAACTTTTTCCATGGTACTGCGCAGTTCATCAATATCTACATCTTTAGGAGTACCTTCCAATAATACATGAATAGCTTCCATCAGAAGTCGCCATGTTCTCGGGAAGATCAGTAAACCAATACCCGCAGAGATCAGCGGATCAGCATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTTATATCACAAAGATATCCAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 3078-1414 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTPG01000089.1 Elizabethkingia anophelis strain LDVH-AR107 isolate CIP108654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3077 47 100.0 30 ............................................... GTATATACTCGTTAAGAGGTAATGCAGCAC 3000 47 100.0 30 ............................................... AACTTATATTCACTGTAACGAGGAAGATAG 2923 47 100.0 30 ............................................... GGTCGGCGATGAAACAAATTATCAATTATT 2846 47 100.0 30 ............................................... TGAACATAATTTCGTCCTTTAACTGCATAC 2769 47 100.0 30 ............................................... ACCCGACCGAGTGGCGACGTTCCGCCGTCT 2692 47 100.0 30 ............................................... CCCGACCAAATAAAACTAATGTTCAATTCA 2615 47 100.0 30 ............................................... GTTCTTCAAATCTTTGTCGGTTTCGCTTGT 2538 47 100.0 30 ............................................... TTGTTGTTTGTCTTAATTGCAAGAAAAAAT 2461 47 100.0 30 ............................................... TAATTTGTTTAATAAATTGCATTTCCTTTG 2384 47 100.0 30 ............................................... TTTGCGTGGCTTAGATATCACAGAGCTTCA 2307 47 100.0 30 ............................................... AAATCAATTTGAAAAAAGTTAAATGGAATT 2230 47 100.0 30 ............................................... TTTGATTTCTGCAACTTCCGAGCACGTTTC 2153 47 100.0 30 ............................................... TCGACATCGTTTGCTAACCCCTCCTCTTTG 2076 47 100.0 30 ............................................... TTTGATAGTGGTACTTTATATTCCATTTTT 1999 47 100.0 30 ............................................... GGGGTTTTCATCACTTACGATGGAGTACCG 1922 47 100.0 30 ............................................... GCGAAGCAATTAATTCGCTTCGCTTTTTCG 1845 47 100.0 30 ............................................... TTATCAAAATTAACAATGCAAGTTATTATT 1768 47 100.0 30 ............................................... GCAATTCGACGACAAAATGAAAAGCACGTC 1691 47 100.0 30 ............................................... GAAGGCGTTCATTAAAATTGTCGCCAGTCC 1614 47 100.0 30 ............................................... GTAAAATAAAGGGAAAACATCGTTTGACAT 1537 47 100.0 30 ............................................... TTTCGTCTTGGGGGCTTTCACCGTTAAAAA 1460 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 22 47 100.0 30 GTTGTGAATTGCTTTCAATTTTGGATATCTTTGTGATATAACACAAC # Left flank : CAAATAAAACTAATGTTCAATTC # Right flank : TCTAATGCTTTCATAAAAAAAAATAATAAATTATTTAAATTATTAAAATATTTATATTAATAATTCTGAAATAGTTTTGAAAAATATTAATGAGTCTTACAAGAAAAAAATTGAATATATCATAAGAAAACTAAATAATGCACTTATTTATTCTGTTGCAAAAAAGGAAGATAAAGCAGGTTACTTTGGACACAAGGATTATTCAAATGAAAGAAAGAATATCAATTTTTTTTCAAAAAACGAATGCTCATGCTCAAAATGTAAATTTAATAAATATGAATTTAGAGAAAGTCTTAATGAAATAAATAATTATAGTATCACTGATACAAGTGATATAATAGACGATATGCAAAAAGCATTTCTTAATTATAAATTTGGTAATTTTTTTCAATCTTTCAAAATGTTTGAAGAGATTGCCTCAAAAGCATGGATAACACAAAAATTCATCACATATTATATTGCACATACTAATATGAAATCATTAAGAAATCTACTTGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAATTTTGGATATCTTTGTGATATAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [93.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.77,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //