Array 1 420413-422698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZP01000006.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N42453 N42453_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420413 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 420474 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 420535 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 420596 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 420658 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 420719 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 420780 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 420841 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 420902 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 420963 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 421024 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 421085 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 421146 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 421207 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 421268 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 421329 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 421390 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 421451 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 421512 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 421573 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 421634 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 421695 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 421756 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 421817 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 421878 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 421939 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 422000 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 422061 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 422122 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 422183 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 422244 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 422305 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 422366 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 422427 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 422488 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 422549 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 422610 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 422671 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440331-442373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZP01000006.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N42453 N42453_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440331 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 440392 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 440453 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 440514 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 440575 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 440636 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 440697 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 440758 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 440819 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 440880 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 440941 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 441002 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 441063 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 441124 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 441185 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 441246 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 441307 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 441368 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 441429 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 441490 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 441551 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 441612 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 441673 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 441734 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 441795 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 441856 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 441917 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 441978 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 442039 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 442100 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 442161 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 442222 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 442283 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 442344 29 100.0 0 ............................. | A [442371] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //