Array 1 494123-494731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034772.1 Listeria seeligeri strain RR4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 494123 29 100.0 37 ............................. GCGATAAAAGCAATTAAAAAGTTGCGAAATAGATCAA 494189 29 100.0 35 ............................. CAGGTCCATTAAAAAATCAATGGAGGTAACATATA 494253 29 100.0 36 ............................. CCGAACAATAAGAAGAATGTTAAGAAAGATAAGAAT 494318 29 100.0 37 ............................. CATATTAGCGTTGACCGGACATTCTACTCGGACATAG 494384 29 100.0 35 ............................. CAAGCTGTCGCAACTGTCAAGCAAGGCTGTTAGGG 494448 29 100.0 36 ............................. AAAGATGGCGATTTTCTAGGCATGTGTTCCGACGAT 494513 29 100.0 34 ............................. GAAAAAGAATTTATGCTATTGATGAAATATATGA 494576 29 100.0 35 ............................. TGTGATGGTCGTTTGTTTTCAGCGGAACGTCTAGG 494640 29 100.0 34 ............................. ACCATTATCCGTCTTCTTGTTCTTCCAACCCGAT 494703 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 100.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TTTGAGTTTAAGGTTACGTTCCTTTTTACTAGCTGCGATAACACCCATTCCCCGTCATAACGGGAAAAAATACTAGGAGATGATGCTTTGATTATTGACGTTCTACAACATGTGCCGCACGAAGGACCAGGACTTATTGCGAAATGGGCGAAAGAAAATCAACATCAATTGAAAGTTCATAGTTTATTTAATGAAAAAGATCAAGTTCCAACTGATTCGGAATTTTTAATCATTCTAGGAGGACCAATGGGAGTGAGTGATACCGCTGAATTTCCATGGTTAGAAGAAGAACGAAACTTGATAAAACAACTAATAGAGCAAAACAAACCGGTTTTTGGTGTATGTCTTGGAGCGCAACAAATTGCGACAGCGCTAGGAAGTACTATTTCGATGAATAGTGAAAAAGAAGTAGGCTGGTTCCCAGTTAACAGAATCTCCACTGAACTATCATTTTTTCCAGAGCGACTAGATGTTTTTCACTGGCATCAAGAGACTTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 500294-501298 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034772.1 Listeria seeligeri strain RR4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 500294 29 100.0 37 ............................. CCAGTAAACGGCATTATAACTGCTCTTACAGATGTTT 500360 29 100.0 36 ............................. AATCATTGATTGCGTAAATGGAGCGGCTGACGCTCG 500425 29 100.0 35 ............................. AGATTTGCCCGGGTGGGGGCATATTATCGCCGATA 500489 29 100.0 34 ............................. ATCAACCGAAATACTTGGAACTGTCATATCTTTA 500552 29 100.0 36 ............................. CAAAAAATGGAGTCAAAGCATTAAGCGCTGACTCCA 500617 29 100.0 36 ............................. GTAGGTATAAACTTGAGTCCCCTAAATCAATTAGAA 500682 29 100.0 35 ............................. TCAAGACTTAGACGACCATCTTCGATGGCTTTCAC 500746 29 100.0 39 ............................. AAACATGAGCGAACGGTTAATTAGTGATATTGAAAATAT 500814 29 100.0 38 ............................. ATCAGTGCAAGGAACTCACTCGTGCTAATTCCGACCGC 500881 29 100.0 36 ............................. ATTTTATGGCATTGAAAAAACAGATGAAAATGTAGA 500946 29 100.0 36 ............................. GTAATTAAAATTGTCCTATTTTCTAAATCTATCAAG 501011 29 100.0 34 ............................. GAAATCCGAAAAAGAACAATCCTCTTATCGTTTC 501074 29 96.6 36 C............................ TTAGTTGCCATAGTGAGAAGTTTAGTTTTTCCTTTT 501139 29 96.6 37 C............................ GTTTTTGGTAATGGTTTTGGTGGAATTTTTTCATTGA 501205 29 100.0 35 ............................. ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 501269 29 86.2 0 ........C....C..A...........G | T [501295] ========== ====== ====== ====== ============================= ======================================= ================== 16 29 98.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCGCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGCATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGTATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 509913-511492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034772.1 Listeria seeligeri strain RR4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 509913 29 100.0 36 ............................. TTTTTAGTAGCTGTAATATAGACATAATTCTCTAGT 509978 29 100.0 34 ............................. GAAGAAATCTAGTTGGGCTTATGAAAAAATTTGG 510041 29 100.0 36 ............................. ATTTGAAGTGTTTCGAAGCATGGAAGTTGCAAGAGT 510106 29 100.0 35 ............................. GCCGATGAAGTAGCTAAAGCTGACAAAGAAGAAGT 510170 29 100.0 34 ............................. CAAGACTACCTAAATGATGGAGACTATGTGGTAA 510233 29 100.0 36 ............................. AGAGGTCTGTAATATTAATATTTTGTATTTTCCTTT 510298 29 100.0 36 ............................. GTTTTTAACCGCGGCCGGGAAAAACGGCGCTTCGTC 510363 29 100.0 35 ............................. GACACATATTTTTCGTAAACCGCTTTGGGTTTTAG 510427 29 100.0 36 ............................. AACGTTTCTGCCAGGTCATCCCCTCTAAGTTGTCTA 510492 29 100.0 37 ............................. ACTGCTCTTAACGGGGATCAGTACCCCATGTTTTACT 510558 29 100.0 35 ............................. CTTTCTCTGGCACCTCTTGAATAATTCTTTTTTGC 510622 29 100.0 37 ............................. AGAAAAGCACTTAAATCATTTAATGATTTGTCTGAGT 510688 29 100.0 37 ............................. ATCGTTTTGACGGCTACCATCGGTACATGGAGAACCC 510754 29 100.0 36 ............................. ACTCGTGATTATCAACAATTTAGAAACAAGAAAACA 510819 29 100.0 34 ............................. AAATATTTAGTTTCTTGGCTGATCATGCTTTGAC 510882 29 100.0 36 ............................. TGCTTTTGCCTGAGGTGCTACGAATTTGCGATAATC 510947 29 100.0 36 ............................. GGTAAAAGAGGTACTGGAAATTATCACTGAAGCGGA 511012 29 100.0 34 ............................. ACATTACCGATAGGCATTTTGGATGATAACTTCT 511075 29 100.0 34 ............................. TTTTAATTAATGCTGTAGACATCATAGCTTTTGC 511138 29 100.0 37 ............................. AAAACTAAAACATCAGTTTTTGTAAATCCAACAACAA 511204 29 100.0 34 ............................. AAAGTTGTCATTGAATTCGCATATCCACTGAAAA 511267 29 100.0 37 ............................. TACAGAAAGGACTTTACTCGTATTTGATATTTTGATA 511333 29 100.0 36 ............................. CCAACTGAGTTTAACTTGGTACTGGTGCTATTGTTG 511398 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 511464 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 25 29 98.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTGTGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGACTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGCGGAAAGCCTTGGGGGAGAATGGTTTTCGATGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAGAATGTAGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATCACTTGATAGCGAAAAAGCACCAGGATTATTCACTTGGTGGAGCGGGAATAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //