Array 1 21750-22573 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGPS01000008.1 Staphylococcus pseudintermedius strain MAD503 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21750 36 100.0 29 .................................... TACGGCGGAAGCCTTATGCCACAACGAAT 21815 36 100.0 29 .................................... AACAAATATGGATACTGCACAGCGAGTAA 21880 36 100.0 30 .................................... GAAAACCAAGAATATATGAATGATGCTGAA 21946 36 100.0 29 .................................... TAATACGCTTGACCATCGACATTGTAAAT 22011 36 100.0 30 .................................... GAATAAATTTCAACCTAATTATAACAGATT 22077 36 100.0 29 .................................... AAATATTGGCGTTCTCAGTTTAACCCATA 22142 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 22208 36 97.2 30 ............................A....... TTTCCTTCGTGATTTCTTCTTCTACTTCGA 22274 36 97.2 29 ............................A....... GCTAAAAGTCAATGTTACTTCATTCCTTA 22339 36 97.2 30 ............................A....... AATGCACGTGCTGTTATGGTGAAAGGCTAT 22405 36 94.4 30 ...........T................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 22471 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 22537 35 83.3 0 T........T................-.CA.C.... | TC [22569] ========== ====== ====== ====== ==================================== ============================== ================== 13 36 97.4 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAGTCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTTGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATATTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 158160-159410 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGPS01000001.1 Staphylococcus pseudintermedius strain MAD503 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 158160 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 158232 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 158302 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 158374 36 100.0 34 .................................... AATTTTCTAATTCTATAAGTTCATTAATTCCGAT 158444 36 100.0 36 .................................... TATACTATTTACATAATTTTTTATGTGTCTGTCTAC 158516 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 158589 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 158659 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 158732 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 158803 36 100.0 38 .................................... TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC 158877 36 100.0 37 .................................... TAGACCATTTACCTCATTATATTTATAGTCTTTATTA 158950 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 159021 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 159093 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 159165 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 159236 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 159305 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 159376 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ====================================== ================== 18 36 99.2 36 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 168373-168134 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGPS01000001.1 Staphylococcus pseudintermedius strain MAD503 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 168372 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 168303 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 168229 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [168221] 168157 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : TTAGATAGCTCTTTAAAGCCTATCAAATCAATAGTTCAAAGGCAAAATTTACTGTCAAAAATAGTGACAAATCACTTGTACTATAAGTGCAGAATGTCACATTTTTTGACAACTAAATTTCAGCTATACTCTAGTTATATTATACTATATTTCCCCATGCCTAAGCTTGTTTTCATACCTGATCCAGAAAATTCGCCAAACTTCAATAAAAAATGAGTTAGTTGTAGAAAAGGTAAGGGTCCTTTAATTTTAAACACTATTTCTCCCGTAAATGAAGGGATTTTAACTTTTTCTAAGTTAAATCGTGTACTTTTCAATTTATAGTCAACAATATTAATATTTTTTTCTAAAAAATCTAATGTTTCTTTATCGTACATTTTATATTCTTCGAAAAAAGCATCAAATTGTATCATAATACTTCTAAAGAAACGTTTAACCTCAGGAAAAATCATGTAATTACTCTGATATTTAAAAGACATAGGTGTCTGTATATTAATTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 226649-228213 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGPS01000001.1 Staphylococcus pseudintermedius strain MAD503 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 226649 36 100.0 36 .................................... AAAATACGCAAGTTTATACATTTTACAAATTTTTCG 226721 36 100.0 38 .................................... TGTAAGGTAACCAAAGCACAACGACAAAAAAATTAAAA 226795 36 100.0 37 .................................... TGATTAATATGAATAAAGAAATAGTAAAAGAAACAGC 226868 36 100.0 35 .................................... AGGAGGAAAACAATATGAGATACGAGATTGGAGCA 226939 36 100.0 39 .................................... TGTATCAACGTCCTCACCAGTTAACCAGTATAAAACGTC 227014 36 100.0 37 .................................... AAAAATTGCACATCATATTTATCAACATCGCTATGTT 227087 36 100.0 39 .................................... AACGAATCTCTTGCCCTACTAATCTTTTGAATTCTAAAT 227162 36 100.0 37 .................................... ACCAGTAATAATAGAATTTATTTGGTTGTGTTGCTCC 227235 36 100.0 38 .................................... GACAACTTTAAAACTTATAAAGAATACGAAAACATGTA 227309 36 100.0 37 .................................... AGGAATTGATACAAATGAAAAACACATTAAATAACGT 227382 36 100.0 37 .................................... AGCAAACTGAGTATACAACTACACATTGTGGTTGGGA 227455 36 100.0 34 .................................... TAAAAACATTTTCAATTTCTTTTAGTAATTCTTT 227525 36 100.0 35 .................................... ATTCATCAGATTGCATCAATTTTTGAAATTCTTCT 227596 36 100.0 37 .................................... TCATAGTTTAAATTTAATAAATTTTCCATAGTTATCA 227669 36 100.0 35 .................................... TATCTATTGTAATATTAATCAATGTTCCCTCGTGA 227740 36 100.0 38 .................................... TTTCATGTTCTTTACAATAGTTTCGAGGAGTACAACCC 227814 36 100.0 35 .................................... CATAATAAAGTCATCTAGGTCATAAACTGTAATAT 227885 36 100.0 36 .................................... TTCTTTTAGTTCTTTTCTTAGTTCAATGAATTTTTT 227957 36 100.0 36 .................................... AGCAAAAACTTATTCATTTATGAAGATTAATTTAAA 228029 36 100.0 36 .................................... CGCCAATGATTTCAGCAAATTCAAACACCATTTTTC 228101 36 100.0 41 .................................... CCTCAATACCTGTACCAACTTCTTTTCCCCAACCAAATACA 228178 36 88.9 0 ............C...T..T............A... | ========== ====== ====== ====== ==================================== ========================================= ================== 22 36 99.5 37 AATCGAATAGAGACCCCGACATTAGGGGACGAGAAC # Left flank : TATGAATGAAGTCGGATGTGTCGCGTACAGTAAAAAAGTGGGAGTATGGTAGTTTTGGCAATTGAATAGGCTGCGGAAATATGTTGACTGCAAAAATACATTGCACATTCCGATGAGCTTTTTGAGTACGAAAAAGTTAAGAATAAACAAAAATTGAATTGTGCACAGCTACAGCATATTCGACCAGAAGTTAAAGGTTAAAGAGAAGGTGTCAGTATACAAAGGAAAAGTGGAAAATATACGATAATTACCATGAACAAGAATTGATTTAAATGAAAACGTTCAAAAAGTGTAGAAGAGGATAATCATGTGGAGAGGATATGAATTGGGAAAAATTTATTGTATAATATCGATGATGTGTTTTGAAAATTTTTAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATTAGGATATTTTTAATGTTAAAGTTGTCTTAATTTCAGACGCGGTTAAATGATAGATATTCTCGCTATCAAGGGATTTCTATAGCTGACT # Right flank : CTTTCAGCAGCCTGAGAATATTCTTTTTCACTCAAGTCAATCGTATTGAAATACGGATATTAAGGGGGCTTATACCATTTATAGTATTTATAAAGTGCTTTTAAGGAGAGGTTACGATATCTGGAGCGTTGAAAAATGACATAACAACATAGAAAGATGAATGCAACGTTTTAAAAATTACAAATAATTCACAATTCTATTGTTGGAAATAAAGAAATGTTGTAAAATTTAATTAACATTTCAAGCGATAAAATGGGGTCTTATACATCTTGATGAATTTTTGTATTTATTGCATATTTTTTAGTCATAGCCATTTAAAGTGTATGTATTAGTGGTTTTGATTGGAATTTTGAAGAAATAATAAGCAGATTAAAGGTGTTGAGATTGGATATACTACTATATTGATATAATGACTCACTGAATCGTATTCTTGCTTTTATCTAGGGGGTGTAAAGATGAAGGATATCATTTATGTTGAGAATCATCATTTTGTCAGTGTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGAGACCCCGACATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //