Array 1 48843-44912 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMIS01000177.1 Acinetobacter baumannii AB_TG27343 AB_TG27343_178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48842 29 86.2 31 ....G.......CC..............G ATCGTAATCATGCCGTGATAGATACCGCCTT 48782 29 86.2 31 ....G.......CC..............G CACCCGTGGGGATAGATATCGATCAAGTACG 48722 29 86.2 31 ....G.......CC..............A ACTTCGAGCGCTTGTTCGTACGTTTGGATAT 48662 29 86.2 31 ....G.......CC..............A TTTTATACGTACCTCACAATTACGCCAATCC 48602 29 86.2 31 ....G.......CC..............A CTTTGCAAAGCTGCAAAAGCTTCAACATTAT 48542 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 48482 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 48422 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 48362 29 89.7 31 ....G.......CC............... TCCGCAATACAAATCACTGGATCAGCCAGGT 48302 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 48242 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 48180 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 48120 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 48060 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 48000 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 47940 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 47880 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 47820 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 47760 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 47700 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 47640 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 47580 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 47520 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 47460 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 47400 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 47340 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 47280 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 47220 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 47160 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 47100 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 47040 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 46980 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 46920 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 46860 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 46800 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 46740 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 46680 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 46620 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 46560 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 46500 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 46440 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 46380 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 46320 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 46260 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 46200 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 46140 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 46080 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 46020 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 45960 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 45900 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 45840 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 45780 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 45720 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 45660 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45600 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 45540 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 45480 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 45420 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 45360 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 45300 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 45240 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45180 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 45120 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 45060 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 45000 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 44940 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 66 29 93.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 53933-55935 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMIS01000177.1 Acinetobacter baumannii AB_TG27343 AB_TG27343_178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53933 28 100.0 32 ............................ AATCCAAAGGTGGGCGGGTCTTATCTTTAATA 53993 28 100.0 32 ............................ ACTGAGGAAGGGAAGGATATCATGCGCGAGGC 54053 28 100.0 32 ............................ ATAAAAGAATTGCTCTTGGCTTTTATTACGCT 54113 28 100.0 32 ............................ AATACCTCTAGCCAAGGCGGTTGGAGTGCCCC 54173 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 54233 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 54293 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 54353 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 54413 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 54473 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 54533 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 54593 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 54653 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 54713 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 54773 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 54833 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 54893 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 54953 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 55013 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 55073 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 55133 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 55193 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 55253 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 55313 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 55373 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 55433 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 55493 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 55553 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 55613 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 55673 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 55733 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 55788 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 55848 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 55909 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 98.3 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //