Array 1 1838421-1843338 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUOU01000001.1 Thalassotalea euphylliae strain H1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================ ================== 1838421 28 100.0 32 ............................ TCGCCGGGTGCCAAGCCATTGGCGAGCATTTC 1838481 28 100.0 32 ............................ GAGGACATCTGAAAACTTTTTGGTCAGATGTT 1838541 28 100.0 32 ............................ ACCATAAGGAATCCTTAAAACGTTGCTCATAC 1838601 28 100.0 32 ............................ GTGAGGTGATGCGTTTAGATAATGGAGATTTT 1838661 28 100.0 32 ............................ CAGAGGGTAAAACTGGGCCATGTGATGACAAT 1838721 28 100.0 32 ............................ ACCAAAATTTTCAATAGCTATTTCATCAAAAA 1838781 28 100.0 32 ............................ CTTGAGTAAATGGCATTGGAAGTCTCAATAAA 1838841 28 100.0 32 ............................ GCTCAGGCAAAACTTAAAAATAGAACGCACAA 1838901 28 100.0 32 ............................ TTGCTGCAATGCGTTGATAATCTCCGCCGAGG 1838961 28 100.0 32 ............................ ATCGTGATTTAAACCTTTAGGTGACTGTGTGC 1839021 28 100.0 32 ............................ ACTAAAGGGTCGGCGGGTGATACTGCCGCGAC 1839081 28 100.0 32 ............................ GCTATACGATGTAAAAATGCCAGGTCCGTTTC 1839141 28 100.0 32 ............................ TTTGACCATGGATGAAAATTGAATTTCAGCCA 1839201 28 100.0 32 ............................ TATATCGCAGATAAAATGGGGTTATCCCCAGT 1839261 28 100.0 32 ............................ GCGAATGGCCTGTAAAATATCGACCATTGGCA 1839321 28 100.0 32 ............................ TTTATCCAAAAGTAAAATCAATGCTAGTTGAA 1839381 28 100.0 32 ............................ AGTCGAGCAATTCGGCCGTTGAATGAAACGCG 1839441 28 100.0 32 ............................ ATTTATCATCAAAAGTCATTTGCTCAAAATAG 1839501 28 100.0 32 ............................ TTGCCAAAGATAGGTTTTAGATGCTTGGTAAC 1839561 28 100.0 32 ............................ ATATACCGCACTGATAATGAATCAGTGGTGTA 1839621 28 100.0 32 ............................ GTGCTCCTCTAACCGTACCAGCGCTTCGGCTT 1839681 28 100.0 32 ............................ AGTTGACGACCATGTTTAAATGAGCGCACCAC 1839741 28 100.0 32 ............................ ATGTTGTGCTTTGGCTTTCGCATCGGTGAAAC 1839801 28 100.0 32 ............................ GACAACGAACCTGCGTTAAGCATTGATAAGCG 1839861 28 100.0 32 ............................ CCTCAACCTTTGGCTTAAACCATCCTGTGATC 1839921 28 100.0 33 ............................ TATTGGTCGCCTTGGCATAAGCTATCCCTTTTT 1839982 28 100.0 32 ............................ TTGTGAAGCTACTGATAAATATTTTTCAACTT 1840042 28 100.0 32 ............................ AATAACGATGCCAATGCACAAGCAGCAAGAAT 1840102 28 100.0 33 ............................ TGAAGGTCTGGGTGACACGTCGATAATCTATCT 1840163 28 100.0 32 ............................ GCATAGTAAAGACCGATAGCGTAGAGATAATC 1840223 28 100.0 32 ............................ AGCTATCAAAAGCTTAAACATGCACTTTTTGG 1840283 28 100.0 32 ............................ TGTGCATCTACCTGTATCGCCTCTTCGATACG 1840343 28 100.0 32 ............................ CTAAGCTTGTTGATATTTTAATACTAAATAAA 1840403 28 100.0 32 ............................ GAGCGAGGCGCTAAAAGCCAAATGGTGGTTAT 1840463 28 100.0 32 ............................ TTTAAAATATTCATCAGCCATTTGTCTCACTG 1840523 28 100.0 32 ............................ TTCATTAGCTACGACTTTTAAAGTATTTGTTT 1840583 28 100.0 32 ............................ ATCTACGAAAAGGCACTTGTAATAAACCCAGC 1840643 28 78.6 80 ................A.TC.A.G...G GAGGAGGTAGGGCGACGCATGGATGCCAAAGCCGAGGCAGCTTAGAAATCAAAACTTAATTGTTCTGTCACCATATAATG C [1840658] 1840752 28 100.0 32 ............................ TGCTTACCCTGACACAACGGCCGCTAGCCGTG 1840812 28 100.0 32 ............................ TGTGTGAAATTTTTTACATTTGTGCTTCAAAC 1840872 28 100.0 32 ............................ TAGATCACGCACCGTCTGCGTGTCCGGCGGGG 1840932 28 100.0 32 ............................ TTAATTGCTGTTGCACTTGTAAGTGCTGCGGG 1840992 28 100.0 32 ............................ CCTGACCTCTTTTTTTGAGTTGGTTTGTAAAT 1841052 28 100.0 32 ............................ TAAAAAAACACCATTCTGGAATTGTTTCAAAT 1841112 28 100.0 32 ............................ TGGCGAAAAAAAGCGTTTGAACGACGTCAGCT 1841172 28 100.0 32 ............................ GGAGGAAAACACTGGACCGAGCTTAGCAATAC 1841232 28 100.0 32 ............................ GGCAAGAGGTTTACCAAGCTAACCGTCGTTAA 1841292 28 100.0 32 ............................ ACCAGTAGGTATGTAATGCCTAGAGCCACTAA 1841352 28 100.0 32 ............................ AGACCAACAGAAACGGCCTAAGATATCTAGCT 1841412 28 100.0 32 ............................ TATGTACATAACACAAGAACAAGTAACGCCAG 1841472 28 100.0 32 ............................ TTTAAGCAAGAAGGCATGACCGCAGCAATCGC 1841532 28 100.0 32 ............................ ATTAACTTACGCTGGTGAAGTTCACCAAGAAT 1841592 28 100.0 32 ............................ TGCTTGAGTAAATCTTCAAGCTTTAAACCGGA 1841652 28 100.0 32 ............................ AAAATGTCAGGCGTTGAGGTGGTTGAGCTCGA 1841712 28 100.0 32 ............................ ACACTTCACGGCGAACGGAGCGCAGTAGCGCT 1841772 28 100.0 32 ............................ TCAAAGGGCATGTACTGCATACGGCTAAAAAT 1841832 28 100.0 32 ............................ TTTATCCAAAAGTAAAATCAATGCTAGTTGAA 1841892 28 100.0 32 ............................ AGTCGAGCAATTCGGCCGTTGAATGAAACGCG 1841952 28 100.0 32 ............................ ATTTATCATCAAAAGTCATTTGCTCAAAATAG 1842012 28 100.0 32 ............................ TTGCCAAAGATAGGTTTTAGATGCTTGGTAAC 1842072 28 100.0 32 ............................ ATATACCGCACTGATAATGAATCAGTGGTGTA 1842132 28 100.0 32 ............................ AGTTGACGACCATGTTTAAATGAGCGCACCAC 1842192 28 100.0 32 ............................ ATGTTGTGCTTTGGCTTTCGCATCGGTGAAAC 1842252 28 100.0 32 ............................ ATCGGCATAAAATAACTTTGAATTTGGTTTTC 1842312 28 100.0 32 ............................ TAGCTGGTTGAACACGTAGGAAAATACTAATT 1842372 28 100.0 32 ............................ ATCTGCAAATAACTTTCTAGCGTATCAAATGA 1842432 28 100.0 32 ............................ ATAAATCATAAATTGTTCCGCTAGCTCGCTTG 1842492 28 100.0 32 ............................ ATAGAAGATGATACAAAGATAAACTACTGGGA 1842552 28 100.0 32 ............................ GATAGTACTTTAGGCACTACTTGCTGATTTAT 1842612 28 100.0 32 ............................ AGCTATCAAAAGCTTAAACATGCACTTTTTGG 1842672 28 100.0 32 ............................ GAAGACAGTTGCAGGTTCGGTGCCTATCACTC 1842732 28 100.0 32 ............................ ATCCCAATTTGCTATAGAACTCTTCTAACAAA 1842792 28 100.0 33 ............................ CATAAGGGAAACGTTAAGGATAGGGAAACAATT 1842853 28 100.0 32 ............................ GAGCAAGTAAGAGATTATCTTGGCGTAACCTT 1842913 28 100.0 32 ............................ AATCGGTAAATAAAACATTTAAGCTTATGAAA 1842973 28 78.6 80 ................A.TC.A.G...G GAGGAGGTAGGGCGACGCATGGATGCCAAAGCCGAGGCAGCTTAGAAAGCTGGCTGACATGCTCTATCGCACAAAAGAAG C [1842988] 1843082 28 100.0 32 ............................ CCGATCACCAAAACAAAGAACGCGTTTACCTC 1843142 28 78.6 80 ................A.TC.A.G...G GAGGAGGTAGGGCGACGCATGGATGCCAAAGCCGAGGCAGCTTAGAAATTCTCACGTTGGCTAAATGCGCCATAATATGA C [1843157] 1843251 28 100.0 32 ............................ GTGTCACGATGCAAGCTAAACGCCTCAGCTAT 1843311 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================================================ ================== 80 28 99.2 34 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATAGTAAATGGTATTGATGTTATTCGGGGCAATATCACCAAAATTCAAGTGGCTATTGGGCAGGGTAACACTGGCTTTTTCAATCAGGTAATGTGATTTATTGACTAGCGTAACGCTTGGCTGCAAGAAAAAGTAGGCTTGATACGCAAGGATTAAGCCCGCGATAAACAGCGCAGAAAAAATCACTAAACGTTTGTTTAATATGGCTAGTACATTTCGCATGAGTTGAGCATTAGCTAAGTATTAGTTGAATAAGTGATTACTTACAGAGAGTTACCTCAAACTTTACAATATTAGCGCCGTACTTCACAAGCGCTTGAATTGTTCGCTGAAATAACAGATAACTAGGACTTCGAGGGGAAGCAAATTTACCCTTTATTTTTGCTCTTTAAAAAACACTAATAATTTCAATTGGTTAAAAATCAACTGAAAATTTGGGTAAAAAAGCCTAATGCCAGTTAATTGATTGGTATTAATGATTATTCTCGCGATAAACTATT # Right flank : ATGACGGTAATGAAATGATTGACGCTCAGGCCAGTTCATTGCTGCCCAAGTCTCCATGGCAGCCAAAGCCAAAGGAATATAATTGTTGCCACACAAGCTATGAAGGAAACAGCTGCTCCACGGTTTTCATCGGGAGAAACATACGAATACAGCCATTGTGCTCACACAAAACCTGAAACCCAAATTTTGTATAAAAAGAATGTGCTGAGTTTGTCAGGCAATCAACCACAATAGCATACGCCGGCATATGCTGATTAACCTCCCACAAATACTTTAATGCGCGAATTAAGCTGATTTTGCCTAATCCCGAACCGTGAAACGCTTTGTGTACCGCTAACTGTGCCAGCAAAAAAACAGGGACTGGATATCGAGGTAATTTTTTGGCGAGCGGGCTAGGTAATGTGTCGCGACGAATTGAGGTGGGCGCTACGCTGTAAAAAGCGCAAATAGCAAACTTTTGATTTAACAATGGTTGCGCACTTGGCAGCACCATTATTCGA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1852758-1854454 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUOU01000001.1 Thalassotalea euphylliae strain H1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================ ================== 1852758 28 100.0 32 ............................ AATGACACAGGCAATGATTCAGCGATTAGTTG 1852818 28 100.0 32 ............................ TTTGAGCCAGACGACGAGCAATTCCGGACCAC 1852878 28 100.0 32 ............................ TCACAATGTACTACTATGGTTTTGACAAGTCT 1852938 28 100.0 32 ............................ GAAGACGAAAGCAAGCGAACAGGCACATGACT 1852998 28 100.0 32 ............................ AAAGCTCGAAGTTCTTTGGTGCGGTGTAACGA 1853058 28 100.0 32 ............................ TGCCGCGATGTTAACGTTGCTTGTGCCACCAA 1853118 28 100.0 32 ............................ TATCGTCGCCGTTTAGATTTATGTACGCGTCA 1853178 28 100.0 32 ............................ TAGCTGTACTAGGAAAAACTTCATTTAATTCA 1853238 28 100.0 32 ............................ TTTATCTGATTCCGGCTGGTCTACTGTTTTTG 1853298 28 100.0 32 ............................ TATATTGACTTTAAGTTGATTGGCTATTTTGA 1853358 28 100.0 32 ............................ ATCTTTGTCCCAAACGGGTGAGCATCTAACAT 1853418 28 100.0 32 ............................ CCTAGCCGATCTGCAAAATAAACGCATGGCAA 1853478 28 100.0 32 ............................ CGTCATTATGTCTATGAATACGCCAAATACAA 1853538 28 96.4 32 ....G....................... AGAAATGCTAGAGCAATGTGCATGCGAATTAG 1853598 28 96.4 32 ....G....................... GCAAAATTTGGACAACAAGCATTTGAAGAAGC 1853658 28 96.4 32 ....G....................... GATAAAATGACGATGTTATCGTCGGGTGATAA 1853718 28 96.4 32 ....G....................... TTAGCAACTCGCTTGGCTGCTCGGCGGCTTTC 1853778 28 96.4 32 ....G....................... GCACCAGAGCGCTTGAATACTGTAAGAATGTT 1853838 28 96.4 32 ....G....................... CTAATGACAGAAATCAATAAACAGCGCACCCC 1853898 28 96.4 32 ....G....................... ATGGAAACCGATAAGAGCAGGTAAGGCTATTA 1853958 28 96.4 32 ....G....................... ATATACACGTTTAGCGAATGACTTCGATTTTT 1854018 28 92.9 32 ....G.............C......... AATTAACACCCATGCCCACGCTGGCAACTGAG 1854078 28 96.4 32 ....G....................... CCAAAGATTTTGAAAATCTTTCTAAAAGCTGT 1854138 28 96.4 32 ....G....................... ACCTTATGCCGACATGATTAATTGCTTATTGC 1854198 28 96.4 32 ....G....................... TCAAACCAACGAGACACCAGTTGAAGCAGACG 1854258 28 75.0 80 ....G...........A.TC.A.G...G GAGGAGGTAGGGCGACGCATGGATGCCAAAGCCGAGGCAGCTTAGAAATGCAAACGCTAACGAAAAACCAGCAGCCATTT C [1854273] 1854367 28 100.0 32 ............................ ATTCAGGCCACCAATTTCTAACTGTCATTCTT 1854427 28 78.6 0 ...............A.......TACTT | ========== ====== ====== ====== ============================ ================================================================================ ================== 28 28 96.7 34 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGTTACTGTAAAGTATCATCAATTTTGCCAGTACCGATTGATGCTAAGCACAGAACCGTATCGCGTAAGCAAACTACCATGTCTCAAGCCAAATTAAGACGATTAAAAGCAAGAGGCTCAATTTCCTCGGCAGCAGAAGAAAAAGCCTATATCGCTAAAATGTTTACCCAAGGCATAGATAACCCATATTTAGAGCTTGAAAGTGGCTCTAATGGGCATAAGCACAGACGCTTTATTCAATTTGGTGAATTAACTGATCAGCCAATAGCAGGTAAATTTGATCATTTTGGTTTAAGTAAACTTGCCACTATTCCTTGGTTTTAATACTTAGTTAATAGTGTTTACTTATATTTAAAGGGTAATCATTTTACCCTTTATTTTTGATCTTTAAAAATTAGTAATATTATCAATAACATAAAAGTAGGTGAAAAATTTGGGTAAAAAAGATAAATAACCTTGTAGCCCTTGTTGTTGCTTATTTTTTTGTTAACATTCTATT # Right flank : TTGCAATAAAACGTTTAAATACTGCCACGGTTTCTAGTGGTGCTTCTTCGTGGGGCAGGTGTCCCAATTCGTCAAACATCACCAGTTCGCTGTCAGGTATTTCGCGGTGGAAATGATCACCAAGTTCTGGTGGTATTAAGCGGTCTTGGCCGCCCCAAATAATTAACGTAGGTTGAGTAATGGTGCTGATTTTATCAGCGTAGGTACCGGGTTTGGTTTGACGAAAACGTTGTGCTAGCGCTTGGCGGTTGCCAGCTCGAACGGTCAGATCAAAATAGCGATCAACCAGCTCTGGGGTAATGATACTTGGGTCGCCATATAAGTTGATAATACTGCTTTCGATCATGCTGCGCGGCAGTACCTTTTCCATCAGCTTGTTTAATATCGGCGTATTGGCAACGATAAAGCCAATGGGGGTGGATTTAGGGGTAAATGGGTAGCCACTGGTGTCAACAAGTGCCAGTTGGCTTACGCGATCAGGGTAGATAACCGCTGTTGCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //