Array 1 31655-30056 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYW01000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain O178 NODE_14_length_81922_cov_108.110814, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31654 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 31593 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 31532 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 31471 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 31410 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31348 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31287 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31226 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31165 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31104 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31043 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30982 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30921 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30860 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30799 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30737 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30634 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30573 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30512 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30451 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30390 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30329 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30268 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30207 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30146 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30085 29 96.6 0 A............................ | A [30058] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49707-47787 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYW01000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain O178 NODE_14_length_81922_cov_108.110814, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49706 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 49645 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 49584 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 49523 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 49462 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 49401 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 49340 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 49279 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 49218 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 49157 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 49096 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 49035 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 48974 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 48913 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 48852 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 48791 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 48730 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48669 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48608 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48547 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 48486 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 48425 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 48364 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 48303 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 48242 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 48180 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 48119 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 48058 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 47997 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 47936 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 47875 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 47814 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //