Array 1 115-1591 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYTU01000009.1 Xanthomonas vasicola pv. vasculorum strain SAM-113 SAM113_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 115 31 83.9 35 ..T...TTGA..................... CAGTGCCTATGCAGCGGCTGTATCAGCTTCGACGC T,A [120,127] 183 31 100.0 35 ............................... TATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGG 249 31 100.0 34 ............................... GAGATACGCGACATGATTGCGTGGGTGTACGGCT 314 31 100.0 34 ............................... CAACGATACCCTTGGATCGCCAAGGTGATGATGC 379 31 100.0 35 ............................... AGCGACAGTGAGTACGCCAAGGCAGCGCAGTACCT 445 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 511 31 100.0 34 ............................... TGCGCAGTCAGGGGACACGATCGGGACTTTCGTT 576 31 100.0 35 ............................... CTGAACTTAAGAAGCAACTATTTAACCAATACATC 642 31 100.0 34 ............................... AGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGA 707 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 773 31 96.8 35 ..............................A TTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAA 839 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 905 31 100.0 35 ............................... ATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTA 971 31 100.0 34 ............................... CTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCC 1036 31 100.0 34 ............................... TCCGCCAGGGCGTCAATATCGGCCTGGGTAAACC 1101 31 100.0 34 ............................... GCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA 1166 31 100.0 34 ............................... ATCACGTCATCCATCGCATCGATATAACGGGCCG 1231 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 1299 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 1365 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 1430 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 1496 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 1561 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 98.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CCGACTCAAAGACAAACGCAAGGCCGGCATCATTCCATCCCGCCAAACCGCGGAACACATCGAGGTGGGTCAAATCTAAGGTGCTGATCACCGATCAAGGTGGGTCAGTTTGAAG # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2844-177 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYTU01000038.1 Xanthomonas vasicola pv. vasculorum strain SAM-113 SAM113_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2843 31 100.0 34 ............................... GCAAGTCGTTGCGGTGGGTACGCTCGATGCCACG 2778 31 100.0 36 ............................... ACAACATCGCCAGCCATAGCAATTACACTTGCTGCA 2711 31 100.0 36 ............................... ACGTCAATCCCGCCCTCAAGGACAGGAGTCCTGCCC 2644 31 100.0 34 ............................... TTGATTACACCCTGCAACACATCTGCACCCATCC 2579 31 100.0 33 ............................... TTCTAATCCCGAAGAAGTCCTCGAAATCCACCG 2515 31 100.0 35 ............................... GGGCAAGAACTGGGAGCCCAAGGAGGTAAATGGCA 2449 31 100.0 33 ............................... ATAGTCATCAATGGGTTGCCCAATGGGCTCCAT 2385 31 100.0 33 ............................... ACCCGAATAATCCAATTCTGTGCTGGTCTTGCC 2321 31 100.0 35 ............................... CGGAATGCACCAGTGTGGAACCAAGGGAATGGCCC 2255 31 100.0 34 ............................... TGATAGCCCGTCACAGTAACACCAACACTTGATT 2190 31 100.0 34 ............................... TGCGACTTCAGGGGCCGCAAGTACTCTATGACCA 2125 31 100.0 35 ............................... TTGGTAGCTGTTATCTCGGTACAGAGGCATACCGG 2059 31 100.0 35 ............................... TCTCTATTGGTTGGGCTTGCGTCGGTTGGGTTACT 1993 31 100.0 35 ............................... CCGACGAACGCATACAACAGATCGCAAAGATCGCC 1927 31 100.0 37 ............................... GGTGTCAGTTGGCCGTGCCATTAGGCAGCCTCCGCGA 1859 31 100.0 37 ............................... TTTACGCCTGAGGGCAAGACCATCGAGCAGTGCGATA 1791 31 100.0 34 ............................... TGTGCACCTTCTGCAACCGGGGCGGCTGCATTGG 1726 31 100.0 35 ............................... CGCCGGTATGCATCCTTTGCAAAAGTCATTACAGC 1660 31 100.0 36 ............................... TCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC 1593 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 1526 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 1461 31 100.0 35 ............................... ACCATTGTGCTCATGTAGGTACTACGGGCGGCACT 1395 31 100.0 36 ............................... CTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG 1328 31 100.0 34 ............................... TCAGCCGGCAAGAGACCCATATCATCCAATTTGC 1263 31 100.0 36 ............................... CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCCC 1196 31 100.0 35 ............................... GGACAGGTCGTCCGATGTTGGAACTTTCCGGCCGT 1130 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 1064 31 100.0 36 ............................... ATTGTCGTGATCGCCAAGGCTGTTATCCGCGCTGTA 997 31 100.0 35 ............................... AGGAGCTCAATGCCCGCCCAATCGGCCGGATTAAT 931 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 865 31 100.0 35 ............................... CAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGA 799 31 100.0 36 ............................... CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 732 31 100.0 33 ............................... AAGACTTGGTACTTTGATGAGAGTGCTGAGGGA 668 31 100.0 36 ............................... CTGAGCCCGTGCCAAGTGACTTACCTGCCAAAGGAA 601 31 100.0 34 ............................... ATCGCGGCGGGGAAGTACCCAAATAGCACGGAGT 536 31 100.0 34 ............................... CGGGGACTTTGAAGATGCAAGGCTTATCGAGTGG 471 31 100.0 36 ............................... CGCTCTTGGTGTATTCAGTTACGACCGATGCAACAG 404 31 100.0 34 ............................... TATGCACACTACTGGAAGGGTGCACATAGCCCGC 339 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 273 31 100.0 35 ............................... ATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCT 207 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 41 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CTGGTAATTAGAGTCAATTGTCAAGGCGTTTTGCGGTCGCGCCCTCACGGTGTCACCAGCACTTTTAATCTGACCCACTTCAGCAACTTCAAACTGACCCACCTCTCGTAGTCTTTGGCCCTTTTGCAGGGCCATGCTGACCGTAGAGGAACAAGTGGAGATCAAGATATTGGCCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //