Array 1 2560146-2559202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002757.1 Ralstonia solanacearum Rs-09-161 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2560145 29 100.0 32 ............................. ACCCCTTCCTTGTCGCCGGCCCAGATGGAGAG 2560084 29 100.0 32 ............................. GACCCAAACGACCGAACGAGGGACTGCCGAGC 2560023 29 100.0 32 ............................. GGGATCGTCTCGGCGCCCGGCGGGAAGACACC 2559962 29 100.0 32 ............................. CTGTTCACGCAGTTCTTGCGCCTGGATTTTTC 2559901 29 100.0 32 ............................. TAATTTCGGCCTACTGCCCGGGGTAAACTTTG 2559840 29 100.0 32 ............................. CGCGATCATTGCGCTTGCCCTGCAGCTGGGTC 2559779 29 100.0 32 ............................. CCCTTCAATGTGCCCGAGTACCGCACGGTCAA 2559718 29 100.0 32 ............................. CCGGCGTTGGTCGTGAGGCCCCGGTATTGCTG 2559657 29 100.0 32 ............................. TTCATTGCGATCCCCCAATGCCCCGGAATCCC 2559596 29 100.0 32 ............................. TTGAGCGAAGAGCAGCGTGAAATGGTGATTGA 2559535 29 100.0 32 ............................. TCGGAAGCGGCGTACTCGGGCGGTCGCATCAA 2559474 29 100.0 32 ............................. GACACGTATGCAATGGTCAGGGCAGCAGGATA 2559413 29 100.0 32 ............................. ATGTACGCCACACGCGCACCCTCGTCGGCGGG 2559352 29 100.0 32 ............................. TCGATGATCACGGATATCAAGGTCCGGGTGAA 2559291 29 100.0 32 ............................. GCCGAGGTTTCCCGCGCAATCTTATGAACGCA 2559230 29 93.1 0 ........................TC... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : CCGCATCATCCCGGCCATCGAAGAGGTGCTTGCGGCAGGCGGTATATCGCCCCCGGAGGCACCCCCGGAATCCGTGCCTCCCGCCATTCCCAACGCCGAGCGTCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTTGCCATCTGGCTGCTGGAGGTGCGTGCCGGTGTATACATCGGCGATGTCTCCCGCCGCACGCGCGAAATGCTCTGGGAGCAGTTGGTCGAGGGGCGCGAAGGCGGCAACGTCGTCATGGCCTGGGCCAGCCAGCACGAATCAGGCTATGAATTCCAGACACTGGGTGCCAACCGCCGGCTTCCAGTCGAATTCGATGGACTGCAGCTCGTGGCCTTTCAGCCGGCAGACAAACCTGCTCTTTGACAACGCGAATAATCGGTGCCTTTTAGGTGGTGGAAATTTCGCTTCTTAATCAGGGGCTTGGGTTAAGT # Right flank : TCGACTTCGCCGCAGGATTGGATCAGCCCGCCAACGCCGCCCGCGCAGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAGCGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATATCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2571387-2569527 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002757.1 Ralstonia solanacearum Rs-09-161 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2571386 29 100.0 32 ............................. GCACGCAAATACATCAGCCGTCTGCACATCCT 2571325 29 100.0 32 ............................. GCGGTCTCTTCGACCGCCGCCTCTATGGATCG 2571264 29 100.0 32 ............................. TGACCGTGAAAACCACGGGCGGCTCGCCGACG 2571203 29 100.0 32 ............................. ACCTCCCCGCCACCGCCGAGGCGTCGGCGCCG 2571142 29 100.0 32 ............................. TTCATGGAGACGTTCCGTACGCTCGGCTTGAG 2571081 29 100.0 32 ............................. GCTGTTCGCGCCTGTCGCAGAGCCTTTAGCCG 2571020 29 100.0 32 ............................. CCGATCTTCAATACGAGAGACCTGCTCCCGCT 2570959 29 100.0 32 ............................. CCGATCTTCAATACGAGAGACCTGCTCCCGCT 2570898 29 100.0 32 ............................. GCAACCAGAATCGTTGTTTGTCCATACAGAAC 2570837 29 100.0 32 ............................. CGGTGCCTCCTCTATACCGACGCTACCAACGT 2570776 29 100.0 32 ............................. CAGATGACCGTCGTAAGGGTTCGGCTTCTTGC 2570715 29 100.0 32 ............................. CACGGCTACGCAGGTTGTCCTCATCGGCCCCT 2570654 29 100.0 32 ............................. CCTTTTCCGAGGGGGAGAACAGCGTTGGTAGC 2570593 29 100.0 32 ............................. GCTCAGCATACGGACGCCCCATCCCAATCATA 2570532 29 100.0 32 ............................. TCGATCCCGACTTGGGCTTTGACCTTCTTTTT 2570471 29 96.6 32 ............................C TGAGCGCATTACCTGTGCGGCCATTGACCGGT 2570410 29 100.0 32 ............................. TGCCCGTGGTTGTCGTGGCCTGCCAATACGTG 2570349 29 100.0 32 ............................. GCCAAAACCAAGGGCACCTACGCTGGCTGAGC 2570288 29 100.0 32 ............................. CAGGACGACCAGTGCTCGGGCCATGAGACGCG 2570227 29 100.0 32 ............................. CGCGCCACCGAGTTCATCGTGCGCACGGCGGA 2570166 29 100.0 32 ............................. GCGCCAGCCGATTGGTTTTGGCTCCTCGGCTA 2570105 29 100.0 32 ............................. TCATCGCGGAAATTCACCTTCCGTACGACGTG 2570044 29 100.0 32 ............................. CTGAGTTTTCGTCCGGCCAGCGGGACAACATC 2569983 29 100.0 32 ............................. ATGACCGAGGCAATGAATCGTGCTGGGGGCAG 2569922 29 100.0 32 ............................. TCGGCCCATTGCGTTATAAATTCACGTTTGCC 2569861 29 100.0 32 ............................. CTTTCAATCGGTTGGGGTGCTGGCATTTCCTC 2569800 29 100.0 32 ............................. CAATTCGGAGCCAAGATTGATGGTGTGACGGA 2569739 29 100.0 33 ............................. AATTACAAAGACAGCCTCGATGAGCGGCTGGAG 2569677 29 100.0 32 ............................. AGGAAGGCGAAGTCGCGGAAGGGGCCCTCTTC 2569616 29 86.2 32 A..........A.A..............A GTGCGCGAGAACGGCGTACCGTTGACCGTCCC 2569555 29 93.1 0 ..............C.............T | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.2 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : GTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATCGAGGGCAAGCTTGGCTACTTTGTCGACTGCGTGCGGTAGGGCATCGCTGCGAGCTTTTGCCCCTGAGGTCAGTTGGTAGATTTTTGGGGGGCGATTTTTTGGTTTTGGATCAAAGGCTTGCGTTAAGT # Right flank : TCAACCAGCCCCAGCTCCCTGACCGTCTTCCGGAGAATGAAGAAAGTCCACGCGGACTCGTGCTTTCCAATATCCCACTTGGGCGATCTTGATATTTTCTGAGGCCATCGACAAAGAGCAGAAATAAATACCCGCGAGACTGTTACGATCACCCGCTCGGAAGCCGGCAAAGATAATAAAATTTCCTGACACCAAAAAAGTCATCAGGCTGACATGGCACAAGGGGCGTCGCGATATTTTGCATATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCGCTATCACCTGCTTGTCTTTCACGCATTGGATGTGGCGGCTTGTGGTGCAGAGCTGTTGCGTTTGCCTCGATTTTCCCTTGCGCCCATGGCTGCGGAGCTTGGTTGGCCGTTAGCCGTTGTCAATCAAATATTCACGTGGTTCTTGGCGTTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGTTTATCGCCTGATCTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //