Array 1 97976-99956 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWQU01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM0928::STM1252 BCW_7518_1__paired__contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97976 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98037 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98098 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98159 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98220 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98281 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98342 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98403 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98464 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98525 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98586 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98647 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98708 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98769 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98830 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98891 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98952 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99013 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99074 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99135 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99196 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99257 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99318 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99379 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99441 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99502 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99563 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99624 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99685 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99746 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99807 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99868 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99929 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116089-117573 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWQU01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM0928::STM1252 BCW_7518_1__paired__contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116089 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116150 29 65.5 40 ...................NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAC 116219 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116280 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116342 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116403 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116464 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116525 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116586 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116647 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116708 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116769 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116830 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116891 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116952 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 117013 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117075 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117178 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117239 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117300 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117361 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117422 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117483 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117544 29 96.6 0 A............................ | A [117570] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 98.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //