Array 1 130672-129554 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZV01000003.1 Bifidobacterium platyrrhinorum strain SMA15 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================= ================== 130671 35 100.0 29 ................................... CTAGCTGATAGGCGGTGACGTTGGTGTCA 130607 35 100.0 29 ................................... GGCGCGATCGAACGCCCCGGCTTCCCCAA 130543 35 100.0 29 ................................... GTTGCGTCGCGCTGAGGTATCGGGTCGCA 130479 35 100.0 29 ................................... TACAAAGCCAAGGGCCGGCCGTTGGAGGA 130415 35 100.0 29 ................................... GTCACCACCAAGGAGATGAAGTTCGACGA 130351 35 100.0 29 ................................... CTCATCTTCGAATGGGACGACGACAACAA 130287 35 100.0 29 ................................... TCGTTGAGGAGGATGTCGCCGGGCCTTGA 130223 35 100.0 29 ................................... GAGTCGCTCGTGACCCGCAACACGTACGA 130159 35 100.0 29 ................................... CTACTTCGACATTATCTCCAGTGACAAGA 130095 35 100.0 29 ................................... TTGCAGCACAGGCCGTTGACCCACCAGCA 130031 35 100.0 29 ................................... TGTGCTCGCTCAGGCATCGATTAGCGAGA 129967 35 100.0 29 ................................... GATTTGCTCGAGAGTGGCATCGGCGAGAC 129903 35 97.1 29 ...T............................... ACGGGTAACGCTGGTTACTGCGAACAGTC 129839 35 97.1 29 ...T............................... TGAGGAGGAGTGTGCCTGCGCCGGCGAAC 129775 35 97.1 29 ...T............................... TCTTGGCTTTATGGCAAGGATGCGACAGC 129711 35 100.0 29 ................................... CGCACCCACGCCTATTATCCAGCCGCAAC 129647 35 100.0 25 ................................... GTATGCATTAGGGTGGCCCCTTACC 129587 34 82.9 0 ...............A.....-......C.T..GT | ========== ====== ====== ====== =================================== ============================= ================== 18 35 98.6 29 AAGCTTATCAAGAGGGGTGAATGCTAATTCCCAAC # Left flank : TTGAACGGCACCGGTCTCACCATTCCCAGTTCGTTGAACGATTTCGCGCAACAGTACGGCCTGTATTGCGAGGGGAAGATCGACCGGCTGCCCGTGCCGGAATACGCGGGTGCCGAATGAAAAAGGACGAGGACAGTGGTGGCATGTGGTGTCTGGTGATGTTCGACCTGCCGGTCAAGACCAAACAGCAGCGCAGCGCGGCCACGGAGTTCAGGAACATGCTGGTGGACATGGGCTACGGCATGGTGCAGTATTCGGTCTATGCCAGGTACACGCCGACGCAGGCGGGCAACCGTGCGACGGTGAAGGCGATCAAGGAGGCGTTGCCCGCGCACGGCTATGTGCGCATCCTGCATGTCAGTGACCACCAGTGGTCTTCGGCGTTGCGTTTTTCCAATCTGGAGCAGGAGGATGCAGTGGAGACGCCGGAGTTGTTCACGCTTTTCTGAACGTAAGATTATCTGAAAACCGCAGAAAATAGCCCCTCCTGAGAAGCTATA # Right flank : CCGTGCGACCCTCGATCTGCGGGGTCTGGGTGAGGGAGAGCGGGGTCTGCACGCCAGGGGCGGTCTGCACGTGCATCGTGCACTCGTATGATTCGCCGGGTGCCAACAGCACCGTCTTGACGCCGACGGTCAGGGTGTCATGCACGGCGAGTCCGTCGTAGCTTGAACCATCAGATGCCTTCCAATCCACCAAGCGGACGCCGGCCGGCGCATACGCGTACATTGCCGTTTTTATGCCTCCATCTGGAATGCCCTCCAGTTGGTCTCCGAGTACGTATTGCGGGGTGGAGGCGACCTGGTCGGCGGTCATCATATTTGTGAGCTTGACATGTACCGTGTACTGGTTGGCTCCGTTGGCGGCGGTTCCGTCGAACGTCATGGTCACCTTGCGTTTGAGATACCAGTCCATCTTCGACTGGGTGATGTCCGAGAAGTACACGCCCAGTTCCGGTGTGGACGCATCGGTCTTCAATGCGCCGGAAATCGGGGTGTTGAGCAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGCTTATCAAGAGGGGTGAATGCTAATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 3436-582 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZV01000005.1 Bifidobacterium platyrrhinorum strain SMA15 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 3435 29 100.0 32 ............................. GAAACAAGCCGGTTGGATTGGGTCGTGTCCGG 3374 29 100.0 32 ............................. TGTTGATGGCGGACCGGTTGACCGACAACCAG 3313 29 100.0 32 ............................. GTGGCTCACCACCATCTAAGCCCCACCCCAGG 3252 29 100.0 32 ............................. GCCTTGCACGCCGGCGCCGACATCGCCGTGGT 3191 29 100.0 32 ............................. CTAAGCGGCAGTAGGACTAAGCGACTACAGCG 3130 29 100.0 32 ............................. AGCTGACCGCCGGCACGCAGGGCTACATCATC 3069 29 100.0 32 ............................. CAGGTCACGAGCTTCGCCGCAAGCCTCGTGAG 3008 29 100.0 32 ............................. GCGTCGACGAAAGCATTGACGCCGGCGGTAAG 2947 29 100.0 32 ............................. AGTCCGTGGGCGGCGTGGAAACCGTGTTCGGA 2886 29 100.0 32 ............................. TTGGATGGTGCAACGTCCAAATACTCGCCAGC 2825 29 100.0 32 ............................. CGGCTGCCGATGATGGTGAGCAGTTGGGGGCG 2764 29 100.0 32 ............................. GCCTCGTCGAGGGTGACCATGTCGCCCTGGAC 2703 29 100.0 32 ............................. GACCTGTCCCAAGCCGCGGCCACGGCCTCGTG 2642 29 100.0 32 ............................. CCGAACCCGCTGTGCCAACCCAGACCGTCAGC 2581 29 100.0 32 ............................. GTGCCCGGCCGCCTGCGCGGTCTCGGCCCGAT 2520 29 100.0 32 ............................. CAGCCGGAGATAAACAGAACCAACTCAACGGC 2459 29 100.0 32 ............................. CCGACGAGGAACGGTCGGGCGTCGAACTTCGC 2398 29 96.6 32 ............................T CGTCGTCGTCGGTGGACTGTCCAACGGCGATA 2337 29 96.6 32 ............................G CTCCTTCTGACCGTCGTCCATTGCGTCCATGA 2276 29 100.0 32 ............................. CGCCTATGGACAATCACCCTGACCGAAGGCAG 2215 29 100.0 33 ............................. CATTTGAAGTAAGGAGACAGTATGACACAGGTG 2153 29 100.0 32 ............................. GTCAGTGTCTAGCCTACCATGACCGAGCGCCT 2092 29 96.6 32 ............................T GCAATCCTCGCATGGGCTGACTTGGACGCGGC 2031 29 100.0 32 ............................. CAGTAGGGGCTCATGTCGAGGCTGGGCAGTTC 1970 29 96.6 32 ............................T CGATACCAGACAGTACGAGCAGGGCGCGGAAA 1909 29 96.6 31 ............................G TGGAGGACGACGACGGGCGTCGCACCGTCTA 1849 29 100.0 32 ............................. GATGGACAAGGTTGCATCGCCGGCGCGGATGG 1788 29 100.0 32 ............................. ATGCAGCCTGGTCGTCATCAAGGGCACGTCGA 1727 29 100.0 32 ............................. ATAAGCGCGAAGGACACAAGGCCGAACGGCGC 1666 29 100.0 32 ............................. CGTTCGCGGTCCTCGCCGTCGCGAACGAATAA 1605 29 100.0 52 ............................. TCGTCGTGGCTCACCCCGCTCGTCGGCGTCATCGGCGCCGTCGCGGCCATCA 1524 29 100.0 32 ............................. GAGCTCATCGGGCTCGGCGCCGACCTCGCCTC 1463 29 100.0 32 ............................. GTCAAGGGCGAGACCAACAGCGCGGTCGAACA 1402 29 100.0 32 ............................. GACAATTTCCTCGACGGGCACGTCGAGGCCGG 1341 29 100.0 32 ............................. ACGTCGTGCGCGTTCAGCTTCACAGGGGTTAG 1280 29 100.0 32 ............................. GCGTTCAGGAACGAACGACCATACTTCGCGTC 1219 29 100.0 32 ............................. GACTTCGAACTCACCATCGCCAGGCTCATCCC 1158 29 100.0 32 ............................. GCCGGCAGCTGGCTCATCGCCTCCGGACGAAG 1097 29 100.0 32 ............................. TTGCAGTGGACGATGTCGTCGGGCGTGTAGTC 1036 29 100.0 32 ............................. AATGGGGTCGTCTACAATTGGATTCCGGTAGA 975 29 100.0 32 ............................. GGCATCGTGAACGTCATCAGCGCAGCGGTAGG 914 29 100.0 32 ............................. CTCCTGTCGTACGGGCCGGCCGAAGCCAACAA 853 29 100.0 32 ............................. CACTTCTCCGACTGGATGATGTCGCTCACGTG 792 29 96.6 32 ..........................C.. GCGCTCTTCGACGACTGCGAGTCGATGCGATC 731 29 96.6 32 ..........................C.. GTCACGCCAAGGCAACGAGAGACCTTCACCAT 670 29 96.6 32 ..........................C.. GCTTCCGCGAAGCATGGTGATAAAAATGTAAA 609 28 82.8 0 .....................C.-..AGG | ========== ====== ====== ====== ============================= ==================================================== ================== 47 29 99.1 32 GTGCTCCCCGCCTACGCGGGGATGATTCC # Left flank : GACACCACGACCATCGTCGACCAGCTGCCCGTCGAACTCGACAAGCGCGGCAACATCGCCCGCAACGACAAGTTCGCCACCTCGCAGGACGGCGTGTTCGTGTGCGGCGACGCCGGCCGAGGCCAGAGCCTCGTCGTGTGGGCCATCGCCGAAGGCCGCTCCTGCGCGGCCGCCGTCGACGAGTACCTGTCCAGCGAGCACACCAGCGAGCTGCCGGCGCCAATCAAGGCGAGCACGCGTCCGATGATGCTGCCGCGTTGATGCTTGACTGATATTGGCCGGATAAGAGGAATTCGTCCGTTGCGTCGACGGTGAACATCTGCTTGGAGGCTGAGTCGTTTCGGGGTCTCCCGACACTATGTAAAACCGGTGTCGGGAGACCCCGTTGCATATGAGGTGAGGTTTCCCGGAGAGCCTCCCGCAGCTCCAGGCGCGCCGAAACCGAATGAAAAATCCGCAAGCCATGTACCATATCATTGGTATATAAGGGATTTTCAAGT # Right flank : AACCAAACGTGGTGTTTATGACTGGGGTTTGGCCTTGTGGCAGTAGGCGTGTCGGGGTGGTTTTAACACGATGTCGTGTTAAAGACCGCCGGTCCGGCCGTCCGGTGCCTGTTCGATGGGTGCATGAGGACGAAGTCGAAGAGGGACCGGCTGTGCCCGGTATGCGGAAAACCGATGAGGAAGAACGGGAGGACGGCCGCCGGCTCCCAACGCTGGAAGTGCGTGGATTGCTCACTGGGGGCCACCGCGCCCAGGACGGACAGGAAGCATGACGCCGACCTGCGGGCCTTCCTCGACTGGCTGCTTTCCGGCAGGACGCAGGGTGACATGGGTCCGGGGCCGCGCGCGTTCCGCAAACGCATCCAATGGTGCTGGAACATCCGACCCGTGATTCCGCCGTGCGCGGTGAGGCATCACACGGTGATGGCGGACGGCACGTACATGAACCATGATTGGTGCCTGATCATCGCGATCGACGGCGGGACCGGCGAGGTGCTGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCTACGCGGGGATGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //