Array 1 1699781-1695607 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 1699780 35 100.0 36 ................................... AGAACAATCAGATATAGCAAAGATAAAAGTTTTGCA 1699709 35 100.0 36 ................................... CGTCAAGGTTGGTAACGTTGTAGTGAAAATCAGCTT 1699638 35 100.0 38 ................................... AAATATTATCAAGCATGGACAAATTTAATAAAAGAGCT 1699565 35 100.0 39 ................................... GGTCAAATCCTTCTAATATTCTTCCTTCTCGTTTTGAAG 1699491 35 100.0 37 ................................... TCTACCAGCTCAATAATACCAATTCCGCTTGGCAGTT 1699419 35 100.0 41 ................................... ATTATTAAAGGTGATTGGAAAGGTGCATGGGAAGGGATAAG 1699343 35 100.0 39 ................................... ATTAATGAAGGGTTAGAGTATCCTAAACTCCCGTGGCAG 1699269 35 100.0 38 ................................... ATAAAATGTCAAAAGAAGAGACAATTCTTGAAGGTGTA 1699196 35 100.0 40 ................................... TATAAGCTACAAACGTTCTAACAGTAACTTTTCTTGCAAC 1699121 35 100.0 39 ................................... GGTCAAATCCTTCTAATATTCTTCCTTCTCGTTTTGAAG 1699047 35 100.0 38 ................................... ATCTTTCGTTTTGGCTTGCGAGGGTGTATTATTTCATA 1698974 35 100.0 35 ................................... ACTATAATCCAGACTTTCTAAGAAGTTTAAACCAA 1698904 35 100.0 36 ................................... GCTTTAATTCCTGTTCCAATATGCCGTTCTGTAATT 1698833 35 100.0 37 ................................... TCGAACATTGAAGCCAATAACAAGTGGCTCTGGCGGA 1698761 35 97.1 38 ...................A............... AACGCTATGCCGAAGTGCCTAAAATAGTGATTAAAATC 1698688 35 100.0 38 ................................... GAAAGGAAAAATAAAGTGTTATTTGAGTGATTGTTCAG 1698615 35 100.0 40 ................................... GTAATAGCCAAAATCTTGTGGTTAATTGGTTTTAGTTTTT 1698540 35 100.0 37 ................................... AACTTAACATTGCCTTTCAGCTTTTAAAAGCATATCA 1698468 35 100.0 40 ................................... CCATATGTTGCGGTTAGAGCCGAAGCTCCTCTTACCTCAA 1698393 35 100.0 38 ................................... TTTTAATCTGGTAGCTGTATTTACAAGGACATTGTTCG 1698320 35 100.0 36 ................................... GAAGCGTTTGATTGGACACTGTAAACCACTCTTTCC 1698249 35 100.0 37 ................................... GGAAAAGATAAGAGCGATGAACGTTTTGCTGGGCGGT 1698177 35 100.0 38 ................................... AATTGATACAACTTGTTGCTCGCTTGTTTTTCTTTGAA 1698104 35 100.0 38 ................................... AAGCTTGGCTTTTTTGTGTTGATACATTTCTAAAATAC 1698031 35 100.0 35 ................................... CATAAATCGGTTGGTAAATAAATTCTGTCCTTGGC 1697961 35 100.0 36 ................................... GTTGCAATCGCACTCTTAACCGCCTGTGCTACTGCC 1697890 35 100.0 38 ................................... TCATAACAGTATACATACAAGTCCACCAACCCAAGAAG 1697817 35 100.0 47 ................................... TACATCAAGGAAGTTATTGCAAAACATAGTCTTAAACCTGTTATGAT 1697735 35 100.0 37 ................................... GCTTATACATTATTGCTGCAAGACCAGCTATGGGGAA 1697663 35 100.0 40 ................................... GTTAAAGCTGCATTTAGTGTTGTGCAGGCAACAATAACTA 1697588 35 100.0 35 ................................... GTTCATCACTTTATCACGGTGAAGTTTTGACGATT 1697518 35 100.0 37 ................................... ATAACAAACTTCTACTATTTGTCGTTTTTTTCTTTTA 1697446 35 100.0 38 ................................... GCTGTGCAGTTAGTGCCATATTAAACCACCTTCTTTCT 1697373 35 100.0 37 ................................... GGATGTTCAGTATATTGCTTGTGTGCTTTATGATGAG 1697301 35 100.0 35 ................................... GCTGTCAGATTTTTTAAGGGTATTGCAAAGTAGGG 1697231 35 100.0 37 ................................... GGATGTTCAGTATATTGCTTGTGTGCTTTATGATGAG 1697159 35 100.0 38 ................................... TGAATGAGGATAGTATAATTGAAAAGCTAACGAGTACA 1697086 35 100.0 38 ................................... GTAAAAACTTCGGGACTTATGTTTTTAAAATCTATGTA 1697013 35 100.0 38 ................................... AAGGCAGAGTTTAGCGAAGAACTGTATAGCAGCAGCTC 1696940 34 97.1 35 ......................-............ GGCTACAGAGGAGTAGGTGTCTACTCCTCTATAAA 1696871 35 100.0 43 ................................... GATTTTGCCAGGTGCTTTAGACGGTGCTGATATGAAAGACGTT 1696793 35 100.0 37 ................................... GTAAGAGCGGCATTTAATGTTGTACAAACAACAATAA 1696721 35 100.0 37 ................................... GTATAAATAATACTCTTCTTCCTTCAAGCCAAATTAA 1696649 35 100.0 37 ................................... ATTCTTATCTGTACTGCCTTTTCTGTCTCCTTTATTC 1696577 35 100.0 36 ................................... ACAAAATAGAGCCGCTTGATACAGTTACTGTTCTGC 1696506 35 100.0 37 ................................... ATTTAGAGCAAAATACGTTATATGCAGATGATATTGA 1696434 35 100.0 37 ................................... AAACTTGGTATTGACATATATACATCGCAGGGAACAG 1696362 35 100.0 37 ................................... ATTTAGAGCAAAATACGTTATATGCAGATGATATTGA 1696290 35 100.0 37 ................................... GCCAGAAAAAACGGGAAATCGACAATGTTATCTGGTT 1696218 35 100.0 36 ................................... GTTTTAATGCTGGATGTTCAGTACCCATTTTTTCTT 1696147 35 100.0 39 ................................... TTAAAACAATTTATTATATATAAAAACTGAAAAGATAAA 1696073 35 100.0 40 ................................... GAAAGCTCTAATGTATTCATCTCTTGTGGCGGGTTTGGTT 1695998 35 100.0 36 ................................... GATTTTATCCAAAGCTTAAGGCAGACGATAAGAAGG 1695927 35 100.0 36 ................................... AAGTGCTAGTAATGTGGTATATGCGTATAATGATGT 1695856 35 100.0 36 ................................... ATATGTATGATTTAACTTCTGTTACGCCTGCAATAC 1695785 35 100.0 39 ................................... TTTAAAAGAGGGCCTACCGCTGCGGTTGCCAATCCTGCT 1695711 35 100.0 35 ................................... TGGATGTGTGGGGACTGGCAGAAATCGGAAGGGAG 1695641 35 85.7 0 ....AA........C.A..........G....... | ========== ====== ====== ====== =================================== =============================================== ================== 58 35 99.7 38 GTTGGGAAGATTCTTCCCTTAAGAGGGATTAAAAC # Left flank : AAAGAGAAGAAACTCATGTATGTTGTATGTTATGACATAGTTGACGATAGAAGGAGAAATAAGATTGCAAATGTTTTAAAAAGCTTTGGGAATAGGGTACAATATTCTGTTTTTGAGTGTTTTCTTACACCAACACAATTTCAGCGTTTAAAATCTCGTTTGCTTCCCCTATTAGAGCGAAATGATAGTATTATGTGTTATAAAATAACACCAGAACTTCAAAAAGATATTGAAAGAATAGGACAGATGCGGTACTATTATGAGGAGGATGACATCATATAATTTTTTTCCTTAAAATGCGATTTGATAATTATCATATTTCTTCTTTACTAACAAAGGTTGCAAAATTCATAGAAAGATAAAAAACCCTTGTCGCAACTTTCTGCAGATAGATTCGAAGCTATTATGCTTAAAAATTTTTTGCGAGAAGGAAACTTTTATATTTTCAAATCGCAGACTGAACTAGAAATCAAGGTTTTTCAAGCCTCACAATCGGCGCT # Right flank : CTTTGTGAAGAAGGAGACATACACCTTGCTGCGAAGACATCATGCAAAGATAGTAAGCTGGATTTTTGAAATTTTCCTTTTACTGAGCTTCAGTTTTAAAGGTGAAAGTGTACAGAGTGGAAATGTCACAACTGCAGTGCCAAATAAATCTGTAAAAGTCTTCATAGATGGTAAACAGATTCCTTGTTATAGTATTGCAGGAAACTTATTTATAAACGCCAATCATCTTAAATATTTTGGTTTTGAAATAAAAGACAATAAAAAATTTAGCTTCAATCCTCAGGTGGTTTCACTATCGCCCATACCAGCCCAGGAATTTTCACGGAAATTTACTGCTTTAGATACTCCAATATTCATTGATTTAGAAAGTGTTGCAACACCTGCTTTTTATGTTCAAGGGGAATACCTCATATTCTTGAATTCAATCTTCTGGTTCTGTAGTGTCAACAAGAAAGGAAATGACTATTACCTGAAGATAAACAGGGATTTGCTAAGCAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAGATTCTTCCCTTAAGAGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 2552404-2554791 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2552404 30 100.0 37 .............................. TTACTACGATTTTTTTCTTTCCGTCAATACAAACCAG 2552471 30 100.0 36 .............................. CTATAATCAACTCTGCGCCACCTCCTTTTTTACTCA 2552537 30 100.0 35 .............................. AACCCTCCCATTTTTTATTTTTTTTTCAAACCCCA 2552602 30 100.0 37 .............................. TTTCACAGTACTTTCTAACAAATTCTAACATTTTCCT 2552669 30 100.0 36 .............................. CGTCAAACACAAACCCTTTTGAATCTTCTAAGACCC 2552735 30 100.0 34 .............................. AACCCTCCCATTTTTTATTTTTTTTCAAACCCCA 2552799 30 100.0 36 .............................. AGGTCTATGATAAGGAGGGTTAAAGGATCTGTTAAG 2552865 30 100.0 36 .............................. CGAATTCCATTTGTCATAACCAACCCAATAAGCATA 2552931 30 100.0 36 .............................. AAGTACTCAAGCATCGTGGACAATAAGCTATTCCTT 2552997 30 100.0 35 .............................. ATGATAAGAGCGAATGGATAGATGAAAGGTGCTGG 2553062 30 100.0 36 .............................. TCCTTAAATACTATATTATTATTACCCTTAACCCCT 2553128 30 100.0 37 .............................. TCTATAACTCTTTTGATAACCCCTTCTCCCCTTCCTA 2553195 30 100.0 35 .............................. TGATATTTGCAAGAGCATCTAACAATACTCTTGAA 2553260 30 100.0 36 .............................. TCACTTCCCTTCAACAATATAGGAGTCTTAAACAAT 2553326 30 100.0 36 .............................. CATCCAACAAAATTCCCTCAATAACTGTCCTGAAAG 2553392 30 100.0 36 .............................. AACCGTATCCGCATGTCTTCTGTAATGTCGTTTCTG 2553458 30 100.0 37 .............................. TAATGTCTAACTCCTGCTTTATAACTCCATCTCGCAA 2553525 30 100.0 35 .............................. GAAAATATTGCGCTAAATAGTTTCTTAGCTCTGTA 2553590 30 100.0 35 .............................. CGGACAAATGGCTTGAGGACTGGGAACGCTATGTG 2553655 30 100.0 39 .............................. TCTTGCAAACACAACGGCAGGGCGTGATTTATATACATT 2553724 30 100.0 35 .............................. AAACCAAGGCAAGGGAAAAGGTTAAGCCCTAATCC 2553789 30 100.0 36 .............................. TTAGATGTCCTTGCAAATATCATAACATGTTCACTG 2553855 30 100.0 38 .............................. GTATAATATAGCTTCTGAACTTCTAACTTCTGTGCAAC 2553923 30 100.0 36 .............................. TATATACAACATGCAAAACCTTCACCTATAGGCATT 2553989 30 100.0 36 .............................. AATATCCTGCTTTTTTCCCATACACATTCCATTATG 2554055 30 100.0 36 .............................. GGATAAAATACAAAAAGGCGAGATTATTGCATGTGA 2554121 30 100.0 36 .............................. TCTCATCAGCTAATTCCCTCAAAACAACATCAAGGC 2554187 30 100.0 36 .............................. TTGTGAAGAACCTTTCTAAATATTAACTTTACCATT 2554253 30 96.7 34 ...........C.................. TTTCTGATAGGTTAGGCCATTCGCAAATCTCAAG 2554317 30 100.0 35 .............................. AATACAAGTATATTGCGTGGCTTGCCATAAGGCTT 2554382 30 100.0 36 .............................. TGGAAGCATATTTAAAGAAAAAGCGTTCACTACAAA 2554448 30 96.7 37 ...........C.................. CATAAATTCGTTTACTTCTTCTATTTCGTAATGCCCA 2554515 30 96.7 35 ...........C.................. AGAAATTCACTATCAAGACGACGTTTGCTGTTCGG 2554580 30 96.7 34 ...........C.................. TTTCTGATAGGTTAGGCCATTCGCAAATCTCAAG 2554644 30 90.0 10 ...........................GGT GGGAGGGGGG Deletion [2554684] 2554684 30 80.0 8 ...........C..AG...........GGA GAGAGAGA Deletion [2554722] 2554722 30 86.7 8 ...........GT.......A........G AAATGGGG G [2554749] Deletion [2554760] 2554761 30 80.0 0 .G.......A.A.......A....C....A | C [2554772] ========== ====== ====== ====== ============================== ======================================= ================== 38 30 98.0 34 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : GGCGTAGCATCTTTTGGAAAATCAGGTCTTTTTGTAAGTGTATTTTCCTCTTTGTGTTCTGCACTGTGCATGTTTCAGAATCCCTCCCAAAATGGATTGTTTGTAAGTTTTTAAGCGTTTTATATTTATATACCCACATCTGTTTTTGTTTAAAACTATCTAATTTTTTATTTTACTCTGTTTGCTATTTAAAACAATTCAAAAATTATGCGAAGAATAGTTGTGACTATTGTTATTTATTCTATTTTTTGTTATATTTGCTTTTCTATTAATTACTAAATAAATGCGTGTATTTAGAGTATCAATACATATTTAAACTTTTGTATTTTCCAATTGCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGACATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCTATAGCAGCTTGAAAACTTAACCATTTGTTCCTTGCGGCTTTTCTCAAACTATCTACGG # Right flank : AGAAAAAAGGGTAAGCCACCTCTTGGGAACTGCATTTACAAAGTATTTTTTGTTTCTATAGTGTGGTATAATGAAAGTGTATAGAAAATATGCAACCTGAGAAAAAGGAGAAAACACTGTGTGCGAAAAATTACCACCAAAAGAGCACGATACAACCTTCAAGTTTTTGTTTGCAGACAAAGAGGAGATACTTTTGCTTGTAAAAGACATACTGCACTACACATGGGCAGATAACATTGAAGAAGATACAATTGAGCTTGTCAAGACAAACTATGTCACCCAGCAGTTTTCACAGGTTGAAGCTGATGTTGTAGCAAAAGCAAAACTAAAGGACAAAGAAGTGTATTTTTATATCCTGATTGAGAATCAGTCGAAGGTAAAAAGAGAAATGCAGCAGAAGATTTTAAAATACATGATAAGTCTATGGGCAGAGGAAATAAGAAAAGGGGTACAAATCCTGCCGGCAATTATACCGATAGTTGTATACAATGGAATAGGTG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 2564413-2566193 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2564413 30 100.0 35 .............................. CGAAAATATACCGATTGCCAAGTTTAAGATGAGGA 2564478 30 100.0 35 .............................. GTAATTAGGAGGTAGGTAATCATGAGAATTTGGGT 2564543 30 100.0 36 .............................. AATATTTCACAAACTTTTGAAAAATTTTTAGTGCAG 2564609 30 100.0 36 .............................. AATATTTCACAAACTTTTGAAAAATTTTTAGTGCAG 2564675 30 100.0 37 .............................. ACTCATTTCTTTGCTACCTATTGCAACCTTTATTTCA 2564742 30 100.0 36 .............................. GGATTGAGAGGTTAGAAGACAGAAAAGAGACAAAAA 2564808 30 100.0 35 .............................. TTATAATATACTTGATAACCCCATCCTTCTTTTTG 2564873 30 100.0 36 .............................. GCACCTAATTGGTGATACATTTTCAAGGACTGGAGG 2564939 30 100.0 36 .............................. TTAGTTGCCTTGAAAGCTTTTGACGAATTCTATACA 2565005 30 100.0 37 .............................. TAATATACCAATGTCTGTCCTGCAACAATGTTTTGTG 2565072 30 100.0 35 .............................. TTGTTAAACACTTTTACAACCTCCATTCTTGATTG 2565137 30 100.0 37 .............................. TGGAACGTATCAGGTCGGGTCTACTTGGTAACACCGA 2565204 30 100.0 35 .............................. TAATTCGACACACGTTACAAAAATCCTTTTTCTCG 2565269 30 100.0 36 .............................. TCGGGCAGGTGGTAAGCATTTTGCGAAAATTTGTTT 2565335 30 100.0 36 .............................. AGTTGGGGGAGAGCTCTGTTTATATAGGTATTGAAA 2565401 30 100.0 35 .............................. TTGTAACCTTTTGCAACATTATTTAACGCTGTCGA 2565466 30 100.0 36 .............................. TTGAACAATACTTTTTAATTAACTCCATTAACATTT 2565532 30 100.0 35 .............................. AGATTTCTTTGGCTATGTCTTCTTCAAGATACATA 2565597 30 100.0 35 .............................. CGGGAAAGAATTTACAACAAACAAATACAGTGATA 2565662 30 100.0 36 .............................. ATACCCCGTCGTTTCGCTTACTTTTCTAAATGCTTC 2565728 30 100.0 37 .............................. ATGTCCTTTTCTGTATCTATTTTTTCTATTGCTCTGA 2565795 30 100.0 36 .............................. TAGGCATGGATGATTTGTTTGAGAAAATTGAAAGTA 2565861 30 100.0 36 .............................. GCACACCGTGAGTACTTTCTCACAGTGTGCTCCTGC 2565927 30 100.0 36 .............................. TTTTTATTTTTTTCAAACCCCAAAGGGTAGGCTACG 2565993 30 100.0 35 .............................. ACAGGTATCTCACAATCATATATTAGTGAACTTGA 2566058 30 100.0 35 .............................. ATTTATATAACCCTCTACATACTCATTTATCTTCC 2566123 30 86.7 12 ...............T.........A.G.G CGTGTGGGGTGG Deletion [2566165] 2566165 29 73.3 0 .G............T...-C...C...GGA | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 98.6 35 GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Left flank : GATAAGTAGGCTTCATTTCCAGAAGAAACACCAATTAGAATGTCACCAATCTCAACTATTTCCTCTATCAATATCCTCTCACCTCTCTTTTATGTTAATTATACCAATTTTATTTTTAACATACAACCAAATTTCGAACTAACATCCTTCGCTTTTCGCTACACTCTTTAATTTTACATACCATGATTTAATTTTTAAGGTCAAATTTTATGCGAAGTTAATTAGTTATTTATGTTTTTTGTTGATTATTTACTTATATGTTAATCCTATATTTTCCGATTTCAATTATGTATCTTGTAATTTGTTGCATATATCAATTTTTGTATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGCATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCTACAGCAGCTTGAAAACTTAACCATTTGTTCCTTGCGGCTTTTCCCAAACTATCTACGG # Right flank : AAAAGTGAGAGAATTGGCGGGCTGTTTTTTGTGAGAACATAAGAGCTGAACTTTGGTTTACTCCCAGTTGGGATAGCTGTGAGAGTTGCAACCTTTTTTGGATTGGAGATGAAAAGACATTAAGGATGAACTAAAAAATTGTCTAAAAAGAAAAGGACTTGCAAAAGTTTTGTCTTGCAAGCCCATGTTTTTAGTCTTTTTAAGAATTGTGTCCTAAATCAAACATCTCGCTTTTGTTCATGTTAAAAGACTTTTTACTTTTCTTAATAAGATCGCAATCTTTTTCGTATTCATCATGGCTAAGCCAAATTTCGTAAATGTATAGTATCTGTTCGTCTCTGCTGAAATGATAGGCACATCTGAAAACATTTTTGCCATTCGATGCACCTTTGTAAATGTTTGGCTTCTCTATACCCCATTCCTTGTTGTGTTTCAGTTCTTGCACCAAAGCCGCATATCTCTTATAGTCATTAGAGTATAGTTTTATTTTCCTGAGCAAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 4 2569259-2571210 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2569259 30 100.0 36 .............................. TGATAAAAACCACAACCATTGTTTGTATTTTTCCAT 2569325 30 100.0 36 .............................. CTTCAAAAAGAAGAAAACAGTTAAGTATCGCTGTAA 2569391 30 100.0 36 .............................. TTCTATCTTCTTCAAAACTCCACAATTTGGGTAAAC 2569457 30 100.0 36 .............................. CCCCTCCTTAATTTATTTTTCATCCCCAACTTGAAA 2569523 30 100.0 35 .............................. CACAAAATTATAGTTTTGTGCAGTATGAACCCTGC 2569588 30 100.0 35 .............................. ACTCTCTCTAATTACTAATTAATTTTTTATTTTTT 2569653 30 100.0 35 .............................. TTGCTTCCCAATCTAAAATTTTTCGAGCCTTTAGA 2569718 30 100.0 36 .............................. GGTTTTTCGGTCTTTTCCCATTTTTTGTTTTTGCCA 2569784 30 100.0 35 .............................. ATTTTTTCAATGTGTTAAATTGGTTTAATAGATTT 2569849 30 100.0 36 .............................. TCTGGTATATTCTCCACCCAGTCTCTCCCCCAGCTT 2569915 30 100.0 37 .............................. AGACATAGAATAACACTGCAAAAAAACATTCCCATAA 2569982 30 100.0 36 .............................. AATTGTCGCTCTCAAAGATGTAACCCACGTTATACG 2570048 30 100.0 34 .............................. AAATCAACTAAAACTCCAATCTCTCTACCTCTTT 2570112 30 100.0 36 .............................. CATCAATAAATCTAATACACCTTTAAAAAATTCCAG 2570178 30 100.0 35 .............................. CCGTCAATGATTCTTTTGATTTTTCCTTCTCCTTT 2570243 30 100.0 35 .............................. AAATTTTCATTCTAAACCCTCCTTTTCTGTTTTTT 2570308 30 100.0 36 .............................. AAAAACTCCAAGCGTGCTGCCTTGTAACCGTGGTGG 2570374 30 100.0 36 .............................. ACGACTGCAAAATTTCTTCTACATCTTTTTTTGATG 2570440 30 100.0 40 .............................. TCAAGAACAATATTGTTTGTTGTGTCTTCCTCATGCTCGA 2570510 30 100.0 36 .............................. AACAACGCTCCACTCATCTAAAGCTTCCTTGTCAAA 2570576 30 100.0 35 .............................. ATATTTATCTTTATGTTTGTTACTACTACTCTTTC 2570641 30 100.0 36 .............................. AGGAAGGGCTTTCAAAATTTTTAAAAGGAGGAGAAC 2570707 30 100.0 36 .............................. AGCAATAAAAATTTTGCTTCAAAAAGAAGAAAACAA 2570773 30 100.0 34 .............................. GCCAAACATACAACCATCGCCAATTCATCAATTC 2570837 30 100.0 36 .............................. ACTTCTGGTTTAACTACATGAGAAACAAAACAAAGA 2570903 30 100.0 37 .............................. TCCATGTGACCAAACTCAGATGCCACCATGCAGTACA 2570970 30 93.3 37 ...........C...G.............. TGATTAGAACCTTCCTCTTTCCCTCCTTTCTTTCAGA 2571037 30 93.3 36 ......G........G.............. ATGAAATTTCCCTTATGAAAATAGTTCCGGTAAACA 2571103 30 83.3 8 ...........C...G...........GGA AGGAGGGG Deletion [2571141] 2571141 30 86.7 9 ...............G...........GGA GTAAGAATT Deletion [2571180] 2571180 30 73.3 0 ......T....AT....G.AAA.......T | G [2571207] ========== ====== ====== ====== ============================== ======================================== ================== 31 30 97.7 34 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : ATATAAGCTGTGTAATCTGAAAGCTTTACATTTAAATAACTACTGCTTGCACCCAAGGCAACCGGGATTATCTGAATCATCAGAATTGAGCAAAAAACAACCACAGTTATAAAAGTTTTATTATACTTTCTCATAAACGACTCATCCTCCTTCTTTATTCTACGCTTTCTATTTTATTCAACTTATTAATATAAACAATTCAAATATTATGCGAAGATAAATTATAATTAATGTAATTTTTTCTGTTATCTACTATTATTGTATTGCTATTTTGTTACATATCAATATGTGTTCTTAGAATTATCTGTTACGGCTAATTCTTGCATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGACATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCTACAGCAGCTTGAAAACTTAACCATTTGTTCCTTGCGGCTTTTCTCAAACTATCTACGG # Right flank : TGGAGAAAGAGTTTACAACCTTTCTGTAGAAATCTATATGCGGTTCATGGATTATAGTTTTTCCTTCAGGAATTGAGAAGAAGAGAAGATTTGTTATCTTTTGCTTTTATAAATTTTTTAGTGGTGGTATAATGAAAGGGGATAATAAAAATTTATGAAGCGTTTAGTAATAAAGTACATTCAAGAATGCTTCAAAAAGGATATGTTTACATTATCAGCACATGCTTTGCAAAGAATGAAGGAAAGAAAAATAACTCTTGAAGAAATAAAAGACTGTATTATAAAAGGGGAAACAATTGAAATACAAGATTTTTTTAAAGATGTACACGTTTTGTTTCAGGAAAGTTCTGATAGACCTGTTATTTACGTTGTTGTAGCAGCTTGTAATCCCCCCAATGGTTGTAACTGTTTGTAGAACAAAAGATGAAATATGGGAAGTGTGTAATGGAATATTGAAGAGGTGGAAAAAGGGAAATGGGTAAAAAATGCTTTTTTTGTGG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 2573557-2574819 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2573557 30 100.0 36 .............................. GGGTTTGAGACAGGTTTTTAGATTAATCTTTAAATA 2573623 30 100.0 36 .............................. CTTCTCATCAAATCACCGCCTTCCTCTAACGAAAAC 2573689 30 100.0 38 .............................. ACGGCACAAGGACAGCTGAAAACCTGACCATCCCCATG 2573757 30 100.0 37 .............................. TTTCATCAATAAAAACATCCACTATAACATTAATAGC 2573824 30 100.0 34 .............................. TCTTTTAAATCTTTTTTTGTTTTTACCATTTTTA 2573888 30 100.0 37 .............................. ACTCTATAATATAATCTCTAATTGCATCTCTTAAACT 2573955 30 100.0 38 .............................. TCGCTTGTGTAGTGTCCTGAATCTTATCTTTTAGCTGT 2574023 30 100.0 34 .............................. TCTTTTAAATCTTTTTTTTCTCTTCTCGTTTTTA 2574087 30 100.0 37 .............................. TCTTATCTTGGCTGGATGATACAAAGCAAAGCTAATT 2574154 30 100.0 38 .............................. GTAGCCATGTGGGAGATGGCGCATGTTTCGGTTTTTGG 2574222 30 100.0 37 .............................. TCGGCACCTAATAAATTCAATTAAGCGATGTCGCACA 2574289 30 100.0 34 .............................. CAAGATTTTGCTTGCAATTGGCTTTAAGTGTTCC 2574353 30 96.7 36 ...........C.................. TATCATTGAAGATATAATTTAGCACTCTAGCGCTGA 2574419 30 100.0 36 .............................. GATGAGATAGCTGAAATGATACAAAGAGCTGGATTA 2574485 30 96.7 35 ...........C.................. GCAATAATAAGTCTCAACACCTTTGGCTTTTGTGT 2574550 30 96.7 38 ...........C.................. CTAAGTAGGGGGTGGTGTTTTGACCACTCCCTAAAAAG 2574618 30 96.7 38 ...........C.................. TCAATTTTTAAATTCTTGAAATCTTCATTGTCTAACAG 2574686 30 96.7 35 ...........C.................. GAAACAAGCTCCTGAGGCAGCTGCAACCCTTCATC 2574751 30 86.7 9 ...........C...............GGT AGTGGAGGG Deletion [2574790] 2574790 30 90.0 0 ...........................GGA | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 98.0 35 GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Left flank : TTTATTATCATCTAAAAATATTATACATCCTTCATATTAAAAATACACTCCTATTTTAGCGAACAAAAATTTTTGAAATCAGTCATTAATTACCGCTGCTCCGTCCATCGTCACCTAAATCATCAGGATATAGGTGTTCAGAGGCAAAATAACTATCAGCTTAGATTTTATATTTTTTAAATCTATTAGCTCAAACAAATCATAATTTATGCGAAGCCCTATTTATGATTATTACTATTAATACTGTTTTTACCTTTTATGTATTGCTATTTTATGGTAGATTGCAATTTGTATTTTGAAATATAAGCCAATTCTTTATTTTGTATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGCATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCCATAGCAGCTTGAAAACTTAACCATTTGTTCCTTGCGGCTTTTTTCAACCTATCTACGG # Right flank : AGAGAGTATTTTCTTTATTAACTCTTGACACTATCTAAAGTTATTGATAAAATGTGTTTGTTTTTTTAGTATATGCTATAGTATCTATTGCTGTTGCAAAAGGATGGGCTATCCATAGAGTTGATAACAAGAAATTAATCAATAAACTGGATAATATGGTGCATCTTAGCGCCATATTATCTTATTTTTTATAATCTACTTGCTTGTTTTACATAAAGAAGAAATCGCATAAGAAATTTCTTAAAGATTGATTGTGCATGGGATGATTGTAAATTAAGATGTATTGATAAAAATATCTAATATTGCAGGTGCAATGTTAAATGGTGGCAAAATCAAGTGTAATAAAAAACATATATACATATTTCATTGGTACTTCTTACAATCGCTATTTCCTTGCCGCATTCTGTGCTGACAGTTTTATTATTGGCCAAAGGCATAACATTATCTCAAATAATGATAATACAAGCAGGTTACAGTTTCGCTGTTCTTATCAGCGAATA # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCGTTGGGGATTGAAAC # Alternate repeat : GTTTGTAGCCTCCCCGTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 6 2587709-2589377 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2587709 30 100.0 36 .............................. AATTTTGTCATATCCTTCCACTCAGGGAAAGCAGAG 2587775 30 100.0 36 .............................. TCTCCTTTACAAAAAGAATCAGGCTCGGAGAGGCGG 2587841 30 100.0 38 .............................. CCAACAACGTGCCTAACACCAGCGGTGCTAAATACAAG 2587909 30 100.0 34 .............................. ATCCACGTCTTCTTGTGTAAAACTTTTAGATTGG 2587973 30 100.0 39 .............................. TCAGCTAACTCCCTAACAACGACATCAAGTCGACTAACG 2588042 30 100.0 37 .............................. AAGTATTTCGATAATTCATCATCTAAAAAACCATCAG 2588109 30 100.0 39 .............................. GTATGAATTAACTAAACTGTCCCATGTAACAACTTCATC 2588178 30 100.0 35 .............................. TTATCAAACATGGTGCGTCAACTATGAGTAACAAT 2588243 30 100.0 37 .............................. ACAAACTTGACGCCAAAGAGTTTGCCTATCTCACCGT 2588310 30 100.0 36 .............................. TTCACTTTTTCCCAGCATTCGCAACAAACTTGTAAA 2588376 30 100.0 38 .............................. TGCACACCATCAGTTGCCGGTGCAACCGACCCCTCAAC 2588444 30 100.0 35 .............................. AAAACCTAAAGGGGAATTTTTGTTCCTCATTGAAA 2588509 30 100.0 39 .............................. CCGTCGTTTTAGTCGTTACAGTTATAGATATAGCTTTTG 2588578 30 100.0 36 .............................. CCTTTTAGAGCATAGTACATTTCAGCTACATAATCA 2588644 30 100.0 36 .............................. ATGCCATCAAAGCCATAACAAAAACAACAGCAATAG 2588710 30 100.0 38 .............................. CTTCTAAAACTGTTTTCCTTGCAAAGTCCTTGTCGATA 2588778 30 100.0 36 .............................. AATTACCAGCAAACAGGCACTATAATTGGTTGTTGC 2588844 30 100.0 38 .............................. CTCTTTTGCTTTCGTACTTTTGCTTTGTCTTCAGTATC 2588912 30 100.0 36 .............................. TCCTGTGAGGCAATGCGTTCGTTGTCTTTTTGCTTT 2588978 30 100.0 36 .............................. GGTGGAATGATGATATACTCAATTCTAACATCCTCA 2589044 30 100.0 37 .............................. GAAAACATCACAAAAGACGGCACACGAGGATTACTAA 2589111 30 100.0 35 .............................. GTTAAATCAAAACTCTCAATCTCTGCTATCTTTAC 2589176 30 100.0 37 .............................. TATTTTTATTTCCACTGGCAAGAGAGGAATGGAATTA 2589243 30 96.7 36 ...........C.................. CCAAGAATAAACTCATCAAGGTTAGTAGTGCAGTTG 2589309 30 90.0 9 ...........................GGT GGGGGAGGG Deletion [2589348] 2589348 30 83.3 0 ...........CT.AGC............. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 98.8 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : AACAAAATATCTTTGAAGAAAAGATTTACAGTCAAAAAACCTTATCTTAGTTCGAGCAGGTTTTTTCGATTATATAATAAAATACACTTATCTTTGTAAACTGCAAAGTTCAAAAAATATGCGAAGTTGAAATTGCTATTTTCCAAGCAATAGCGATTCGATTTGCTGAGATCTGGAATATTTGTGTCAAGGAAAAGGGCAGCGCTTAAATTTTATTCATTGTTTTGAGCATTTTGCGTATTTTTATTCATTTTGACCAAAAGTCATATCCGTCGACCTTGGGTGCAAAATTTTTTAAGTTTGGTTTGTATTCGGTTTCATGCTTGCGGGCTGTGGGTTTGAGCTGATTTTTGGAAGCAGATGGATAGACGGAAAGGGTTGAGAAGGTTCTTTTCTTTTGATACAACTGGGTTTGTGCCGGTTTTGAGGGCATGTATTAAAATAAAAACATTGACAGTGGTGCATAAAGTTGATATAATAAAATCAAGCTTTTTGACGGG # Right flank : CGCTTTATAAACCAGGTGACCTTGATACTGCGCATTAGAAAGACGTTAATACAAATTATTGGATATGTTTATAAAAAAAGCCACGCAGAGGGACATCAAAACATGCCTCTGTCGTGGCTATTTTTTCTTGACTTTGTCAGTTTGAAGTTCAAAAAGCTTGGGAGGACTGGGATTGACAATATTTGGTCGTCAATTTTGTCACTACATCATTTGCTAATACCAATAAATTCTAAGCCTTCCTCATATGTCATGAAGTTTTTTGGACCCTTTATCTTCATTACATTCAGTATATCTCCAGCTCCTCCCTCAATTCTTTGCTTTATCAAATATTTCTTCCCTTTTATCTCTATTTCAAAAAAGTTCATTGAATATATTGCTTCCATTATCCTTTCACTACTTATTCCTTTACCTTTTCTCCTCAAAATATATTCCAATGTCCTTTGCAGTAAAAATGCCAAAAAACATATCACAAAATGTCCTTTTATTCTGCTTTCTGTAAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 7 2597265-2599242 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2597265 30 93.3 37 ...........T...G.............. AAGCTTCAACTATAATCATCCAGTCATCAATTGGCAA 2597332 30 93.3 37 ...........T...G.............. CTCAGAGACTGATTCCAATCCCAGCGTATGGATTATC 2597399 30 100.0 35 .............................. AAGTCAACATTGTTTTCGTCTATGATATCCATCAA 2597464 30 100.0 35 .............................. AAAAAGTAGATTGCCCGATGGGGATTGGGCGAAAG 2597529 30 100.0 36 .............................. TTCTTCATATTAAATCCGCCTCCTCATTTTATTTTT 2597595 30 100.0 36 .............................. AAAAGAAATTCCCCTTGGAGTAGGGCTTGTCCCTAC 2597661 30 100.0 37 .............................. GCCATGCTATATGCTCAAGGAAAAATGACTGTTATTC 2597728 30 100.0 36 .............................. GGAAATACCATGAATTAGGGGCACAGTTACCCAAGC 2597794 30 100.0 35 .............................. AGATACTTAGCATACTTAACCTTATTCATCCTTAT 2597859 30 100.0 37 .............................. CGATTCCCCATCCACTTAAATACTCCCCATCTCTCCA 2597926 30 100.0 35 .............................. TACCCTGCCCTGTCCAAAATTTCTTTAGCTGCTTG 2597991 30 100.0 35 .............................. TTACTTTGCTGACGAGCATAATTGCAATGTTCATA 2598056 30 100.0 35 .............................. TACCACGCACCAAAGCGCTGTAACTTTTACCACTA 2598121 30 100.0 36 .............................. CTGTGCTGCCACCAAACTTGATTGAGCATCCCTCAG 2598187 30 100.0 35 .............................. AGGGAAGTGATTGATAAATGATAACATCTGTAATA 2598252 30 100.0 35 .............................. TTTTAAACCCCAACGGGTAGGCTACTTTTTGCTCT 2598317 30 96.7 36 ...............G.............. AGTTATTACAAGATTCTATTATTTTTTTCAATATAA 2598383 30 100.0 37 .............................. AATCCTCCTCCTTTTCTGTTTTTTCAAAAGCCTTCAC 2598450 30 100.0 37 .............................. ATCTTCTTCATTCTAAACCCTCCTCCTTATCCTTTTC 2598517 30 100.0 36 .............................. GCTTTCTCCACCCTATCCTATGCAGCACATTCTTCC 2598583 30 100.0 34 .............................. ATGATTTAGCTGATTCGACAGGATTGAGCAAGAA 2598647 30 100.0 35 .............................. AAGTAATAAACGTATTTCAAGGGAAGTTCAACCTC 2598712 30 100.0 35 .............................. TCAATCCCACTTGGAAGTTTCCACTCGGGAACCCA 2598777 30 96.7 36 ...............G.............. TAGACCTTAACCATCATCTCAACAATGTCATCATTG 2598843 30 96.7 38 ...............G.............. TTCTTCCTCTAATCCTAAATCATCTAAAAATTTTTTTA 2598911 30 96.7 35 ...............G.............. ATTTCGTCCTCCCAGGTATTTAGTACCACAAGAGG 2598976 30 96.7 39 ...A.......................... TTTCTTTTAGCTGTTGATATCGTGCTAAAATAGATTTAA 2599045 30 96.7 35 ...A.......................... CCTTGTGCGTTAGCTCAGTTTGTACCTGCTGAGCT 2599110 30 100.0 34 .............................. ACCAATTCATCAATACTCATTTTGACTCACCCAG 2599174 30 86.7 9 ...........T...............GGT GGTGGAGGG Deletion [2599213] 2599213 30 86.7 0 ........T......G....A........T | ========== ====== ====== ====== ============================== ======================================= ================== 31 30 98.1 35 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : GTTCTGAAAATCTGTGGTATAAAGTAAAGCAGGCTTTCTATCCATATCAGAAATGTTAGTTAACTTCTTTCTTGAAAAACTTGTTATTTAGATAGTGCTACTAATATGGAATAGTAGAACTTTATTTATGTCTTATATTGTCAGTTTTTGCAACTTTCTACTCACCAATATTTGAAATACTTGAAGAGATAGAAATTCTCTATCATAACTTTCTACTTGATGCATACCAAGTCGGGCTTTGTCAGCTTTTTCTTGCTATGTTATTACATTTTTATCCATTTTGTTTCGTGTATTTTGTGTTTACAGTTTTTTAGTGATTTTGTATTTTCCAACTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTATTTTCTGGCATGTGTTGACTTTCAAGAGTTTGTGGGGTATAATAGAAATAACCTATAGCAGCTTGAAAACATAACCATTTGTTCCTTGTGGCTTTCTTCAAACTATCTACGGG # Right flank : TGTAACACTGAGAAAAATTGCCTATACAAATTACAGTAAAAATTTAAAAAAATATAAAATACAAAAATTAAACAATGTGAGCACAAGAACTAAGAATAGGATATTTGAACTCAGATTATGGAATAAACATAACAAAAAACGATTTATCTTTACCTTGAAAATATTAACCCAAACTATTTCTCACATCTAATCTGTATAAACATTGCAACAGTTTTTATTGGATTGGGTGGAAAATTATACCTGTTAGATAAATACGGTAACTGGATATTGTTAAATAATAAAGATTTTATAATTATGTAATATACTGGGGATAAAGATGCGTAAAGAAAGGACATATATGAGCCCACATAATATTCTGGATGATGCTGTATTACCAGTTTCATAGTTTCTGAAATCTGTTTTAAGTACATCGACAAAAGTAGATTTTTCTGGATTTGCAAGGTTTGCAATATCGCCACTCAACTTAATTAAAACTTTAGCAAAATGTCTTCTTTTTACAT # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 8 2612217-2616176 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2612217 30 100.0 38 .............................. TAAGGGAAAACTAACGATTTAACAAGAGCAGGATGTCC 2612285 30 100.0 37 .............................. AAAAATCCGAGTATGAAGAAAAAATAAAGTCGTTTGT 2612352 30 100.0 38 .............................. ATTTTATTTGCATCTGCGGTTTTTAACCATGAATGAAT 2612420 30 100.0 36 .............................. ACCGCCCCGATGATAATTCCCTCATCGGGAAAGTCA 2612486 30 100.0 35 .............................. CTGTTTAATGCATGCCATGTAGTTTCTATCCACAT 2612551 30 100.0 37 .............................. ATATTTACTTTTGCCTTTTCTGTCTCAGCTTTCAAAA 2612618 30 100.0 36 .............................. ATGAAAAACATTAATTACATTCTTGCAAGGGATGAA 2612684 30 100.0 38 .............................. AAGAGACGAGTATTGGACTTGCAAAGAAATTGTATCGT 2612752 30 100.0 36 .............................. AATAATTTCTAAATATTCTTAATCTATCTCAAAAGA 2612818 30 100.0 35 .............................. ATGAACTTCTTCAAAAATTTCTAAATACTTTCAAT 2612883 30 100.0 37 .............................. ATCTATACCCTTACTCTTCAATATGCTGAACTCATCT 2612950 30 100.0 35 .............................. TGCTCAGATAGACGAAGCAGATTATATTTGTAAGC 2613015 30 100.0 36 .............................. GCTTTGAAATTGCCGTCTTTGTCTTTTTCGAGCTCA 2613081 30 100.0 39 .............................. GTACTTCAAACGTCCAAGCGATAATGTGAGCTTGCACAT 2613150 30 100.0 37 .............................. TGTGATTGCAATTGCTCTTGTATCTTTGATTCAATCT 2613217 30 100.0 35 .............................. CCACCACGTACTAATGATTGATTGATAGTACGAAT 2613282 30 100.0 35 .............................. TTTTTTCACCTCCCCTTGGACACGATGGCTACTAC 2613347 30 100.0 38 .............................. ATAAGTTCTCCACAGACAGGACAGGTGGCTAATTCCCG 2613415 30 100.0 39 .............................. TACCACCGCCTTACGGTGTTAATTGTAGTTTACCACTTC 2613484 30 100.0 37 .............................. GTCATTGATGCGTGGTGGAGAACAGTTCGTTGTCTTT 2613551 30 100.0 37 .............................. AATGGCTGAAAAGGTAAGCAACAAGCCGTGGGGTGCC 2613618 30 100.0 37 .............................. TGGCATTGTGGAGATGGACGTGGCAGATATGGTATAA 2613685 30 100.0 38 .............................. TGTTTTCTTGCTTTATCAACTCTGCAAGCTTTCTATTA 2613753 30 100.0 38 .............................. TTCTGAGAGTGAAAGGTGATTCAATGGAGCCAGAGATA 2613821 30 100.0 36 .............................. CCCTATCTGTTCAATTGTTAAAGTCTCATCTTCAAC 2613887 30 100.0 38 .............................. ATGAATGTTTCAAACACATAGCGTTCCCAGTCCTCAAG 2613955 30 100.0 36 .............................. AATTATTGTCCAAGATTTTAATAATTCATATTTTAT 2614021 30 100.0 36 .............................. ACCTGAACTGCCAACGTTGCATACCCAGCTTTTTTA 2614087 30 100.0 37 .............................. ACTGAATAATACACTGTCGCCCTTGTGCCTTCTATTA 2614154 30 100.0 38 .............................. TATCTTATTCCATCATACTCTACCTGAACTGCCAACGT 2614222 30 100.0 38 .............................. AGAGGTAGACGACATATTTAGACTTGTATTGATGTTAG 2614290 30 100.0 36 .............................. CTACCACCATTATTACTACCTGCACTATAATTTGGT 2614356 30 100.0 38 .............................. GTCTCAGGTTGTGTTACAAGTATGTTATAAAAATCTTT 2614424 30 100.0 36 .............................. ACAGTTGACCTTTTTTGATTGAAAAGAGGTGATGAA 2614490 30 100.0 37 .............................. TTAATGCTTGATGGTGAGAAATCACGGTTTTTCAGTT 2614557 30 96.7 38 ...........G.................. CACGATATCCTTTCAAACCTTCACCATCTGTTTTCAAC 2614625 30 96.7 36 ...........G.................. GCAAGTATCTCATACAGGATAGTGCTCGCAGTGCGA 2614691 30 96.7 38 ...........G.................. ATGATTTTTATGATAGAGTTGCGTTTGAAGATGTAAAA 2614759 30 96.7 38 ...........G.................. TAATATATATTTTACACCATAATAGCTTTTTCCTGCTC 2614827 30 96.7 36 ...........G.................. AAGTCTTCGCTATCATTGATACTGGTATCAGTGTTA 2614893 30 96.7 38 ...........G.................. ACTCTATAATGTCTACTCAATACAAGTGCATCAAAAAG 2614961 30 96.7 38 ...........G.................. GCAGGATGTGCCAGGTACCGTATGCACGGTACGCAGTA 2615029 30 96.7 39 ...........G.................. TGTCTAAATCATCAGCAAGTTTTCTAAAATCATTTGCAT 2615098 30 96.7 36 ...........G.................. TAGTCAGGATAATTCAATTGCGAATAAGCATAGTTT 2615164 30 100.0 38 .............................. TCCTGTTGGCAAACTTTTGCAAATCCCCATAATCGGCA 2615232 30 100.0 36 .............................. ATTATCCTTGCCATCCTATCAATTTCGAAATCTATT 2615298 30 100.0 36 .............................. ATTGAAGCACAAATTAAAGCCTGCAAAGAATACTGC 2615364 30 100.0 37 .............................. GCTTTTCCTAAATTCTAATGGGGACTCTGTCCCCATA 2615431 30 100.0 39 .............................. GTCAATTTCTGATCCCTTGGTAAACATACTGGTCTACTA 2615500 30 100.0 37 .............................. ACTACTTTAGAAATTATGAATTTTCTGTCATTGATAA 2615567 30 96.7 35 ...........G.................. TTATAAATCTTGCGTGAAGTGTTTGGTGAATGCAT 2615632 30 96.7 38 ...........G.................. GCTATAATGTCAAAATCAGGAATTTCTTTTTTAAGTTC 2615700 30 96.7 36 ...........G.................. ACAACACAGAAGTGCCTGCAACAAACGTTTCAGTAG 2615766 30 96.7 37 ...........G.................. ACAAGCACTTTCTTCATACCAATCTACCTCCAATTTT 2615833 30 96.7 38 ...........G.................. TAAACTATGATTGCTTTTTCATATTCTCTTATTTCTTT 2615901 30 96.7 36 ...........G.................. GCTTGTTAGAATATCAGCAAACAAGAGCAAAAATCA 2615967 30 96.7 40 ...........G.................. ATGAATAAGTATTTGGGTTTATTTTCTTTTTTTGGCTTTT 2616037 30 93.3 40 ...........G.................T ATTCCTCTTTTTGGTGATTTTTGTACTCTTCTTGAAGTTT 2616107 30 90.0 8 ...........T...G.............A AGAAGAGA G [2616134] Deletion [2616145] 2616146 30 76.7 0 ....T..C...TT........A....G..G | T [2616172] ========== ====== ====== ====== ============================== ======================================== ================== 60 30 98.5 37 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TCAATATTACCACTTCCTCTCAAAAAACTTTAACTCAATATGGCGGATATCAAGCAAAGACTCTTTTTATATGATACAATTGTTAAGCAAAATTTTAAAGTTCAAAAATCATGCGAGGCTGCTTGTTTATTAATAAGTGTTTGTATTCAGTTTTATAACTTCCAGGTTAGAAAATTGATTTTGGAGACATGTACTATACATGCTTTTGTAATATTATTCATTATTACTGAGGTACTTATGTATTGATATGCATTTTGACTAAAAGTCATATCCGTCGACCTCAGGTGCAATATTTTTATAATCTTTATTGTATTCGGTTTCATGTTTGTGGGATGTGGCTTTGAATGGATTTCTGGCAGCAGCTGGATAGACGGAAAGGTTTGAAAGGCTTCTTTTCTTTTATGCAACTGGGTTTGTGTTGATTTTGAGGGAATGTATCAAAATAAAAACATTGACAGGGGTGCATAAAGTTGATATAATAAAATCAGGCTTTTTAACCG # Right flank : GAAAGGAATTGCAAATCCTAAACTTCGCAAAAAATTTGACTTCAGCTTTTCTCTTTTTTGTCCTATCATCAAAAGTAGAAAATCCCTTTTGTTAGAAGGGGGAAATAAAACATGTCTTATCTTCCAAAGAGTCCAAAGGAAGTTTATGAACAGATTTTACTTGAATACCAAGCCTATTCAGAGTTTAAAAAAAGAATAGAAGGAAAGTGTTACCTGCCACACGATCCTGAAAATGTCCTTTATCTGTACTGCAATTCCACTTTCAATGAAGAATATGAAGAAATGTTGAAAAGCAAACAAATTGAAAATTACGTTGAGCCCCAAACCGAAGAAGAGTGGGAATACTATGCCGAAGAAGATGAATATTGCAAAGAAGAATTCGAAAACGACTTTGAGTTTTTTGATGCAGACTATGAAATGTCAAGCGAAATGGATGATATAGTTGATGACCCTGATTTTTGGGATTCTTTTGATTATGAATGGGGCGACTGATTTTAAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 9 2625215-2625679 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2625215 29 100.0 39 ............................. TTTTCCCAGTTTGTGCACAATCTATTCCATATAAAATCT 2625283 29 100.0 36 ............................. TCTGACATTTAACTTATCTATCGCCCAAAGCAATTG 2625348 29 100.0 36 ............................. TAAACAATCATATATAACTCTTTTAAATTGTATTTT 2625413 29 96.6 38 ...........T................. CGCTTGTGGATAAAATAAATCTGGAGCCCATTTTGGGA 2625480 29 96.6 37 ...........T................. CAACAATTTTCAAGTTTTTCAAACTGCATTTCATCAA 2625546 29 96.6 37 ...........T................. CACCTATTTTTCTGAGGAAAGCCATAGCAGCCTCCTC 2625612 29 89.7 10 ...........G...............GG TGGAAGAAGG Deletion [2625651] 2625651 29 82.8 0 ......G.T.....G....A.A....... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 95.3 33 GTTTGTAGCCTCCCCTTTGGGGATTGAAA # Left flank : ATCTCCCTGTTAACTTTGAAAATCTTATATTTCGTATACCACACAGCCAGCTTAGCGACTTTTATGACCCGATTACGGGTTTTAAAACAAAGGGGGAAAGCTACCTGAGTTTTTAACACTTTTTGCTTTCTCCCTTGTCATACCTGTAGGTTTAGAGATTTTACCTTGTTTTATTCTCCTTGCAGCACTTTTAATATAGCTATTGTTGTAATATTATTCATAATCTTTGAAGAAATCGTGAATACCAATACATTTTGACCAAAAGTCACATCTGTCGACCTCTGGTGCAAATTTTTTATAAACTTGATTGTATTCGGTTTCATGTTTGTGGGATGTGGCTTTGAATGGATTTCTGGCAGCAGCTGGATAGACGGAAAGGTTTGAAAGGCTTCTTTTCTTTTATGCAACTGGGTTTGTGTTGATTTTGAGTGGATGTATTAACATAAAAACATTGACAGGGGTGCATAAAGTTGATATAATAAAATCAAGCTTTTCAACCT # Right flank : AAAAAAGATAAACAAAACAAAAAAGCTACAGGTGGCATGATATGGTAATTTATGCCCTTACCTGCAGCTTTGTTAGTTTTAAGGAAATTTTATAAGAACTATGTTCTTTTCTTCTGCTGCATATTCCAAAAGCCTTTCTGAAAACCCTGCCTTGCTGAAGAGAATATAAAACTCTTTTTGGTCAGGGAATACTTTTACATTTTCTGCTTTTTTCTTTAAGTCAAAAAAGACATCAATATCAATCATGTTTTGCGAATATTTGCACTCCCCAAAAACAACATGCCTCATGCTTCTTCCAATTCCTACTATATCAATCTCTGATTTTCCATCCCACCACTTGCCTATTTTATCTATCTGAACATCTATTTTTTCGCTTCTTATTAAATCACTCAAAATTTGTTTACAAACTTCTTCATAAACGTAGCTTATATGACTTGCTACTATTTTTGATCTTATATTTTCAATTACATATTCAATATTGTCAAGTTCTAATTGTTCTC # Questionable array : NO Score: 8.41 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAA # Alternate repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 10 2627611-2628385 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2627611 30 100.0 37 .............................. TTTAAATTTGCATTTAAATTAATCATTTGCTCTGTAG 2627678 30 100.0 36 .............................. AAGCAAAATTTCTCTTTTTGCCCTCGCACATACCAT 2627744 30 100.0 36 .............................. ACTTTTGCGTCTCTGACAGCTTGTCGTATAGCTTCA 2627810 30 100.0 37 .............................. ATTTTTAATTTAGACATCATTCTGCTTAATGACCCTA 2627877 30 100.0 38 .............................. GCTGAAATTGGAACTAAACCTAATGAAACTTTGATTTT 2627945 30 100.0 37 .............................. GCTTCTTTAAATAAATTGTATAAACTCTCTCTAAACT 2628012 30 100.0 33 .............................. TTATTATACCCCTTTTCTTGCTTTTGTAAATAC 2628075 30 100.0 36 .............................. ATGTTTGTTTGGTCAGCAGATGATGCCAAGAGCACT 2628141 30 100.0 37 .............................. AATCCTCTTTTGCTTTTGTTTGTTAGCTTGGGTATAA 2628208 30 100.0 39 .............................. AATGATTCTCAGTTCTTACGATGTCATAAGCATCATCTA 2628277 30 86.7 9 ...........T...............GGA GAGAGGGGA Deletion [2628316] 2628316 30 80.0 9 A..........T.T.............GGT GGGGCTGGG Deletion [2628355] 2628355 30 73.3 0 .G...C..T....T...G.........GGA | A [2628374] ========== ====== ====== ====== ============================== ======================================= ================== 13 30 95.4 32 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : AAATCAAGCTCATGCTTTCGGTTTATAAACTTTTTCATAAAAATCACCTCATATTTATTATACTCTATTTTATTATACTGTATAGTATATTTTACGTACCAGTATGTAGTTTGTTTTTTAGAGTAAAAATCTCTTGATGTTTTATTTGCTAAAAAATATTTTGGTTTTAAATATTTATTTGTGGGCTGTTTGTGAATGCTCAAAAAGATTTTATTTTTTATATTTATACACTCAACATTGATAGAAATTACATTTTGACCGAAAGTCATATCTGTCAACCTCAGGTGCAAAATTTTTATAGGATGATTTGTATTCGGTTTCATGTTTTTGGGACGTGGCTTTGAATGGATTTCTGGCAGCTGCTGGATAGACGGAAAGGTTTGAAAGGCTTCTTTTATTTGATGCAACTGGGTTTGTGTTGATTTCTAAGGGGTGTATCAAAATAAAAACATTGACAGAGGTGCATAAAGTTGACATAATAAAATCAGGCTTTTTAACCT # Right flank : AGAAAGGTGAGATCTCAGTTTTCTCTTTGGCGATTAAAAATAAAAAAAGCCGCAGGCATATTAACTTTTCTTTGCCTGGGGCTTTTATTTTATTAAGCTTGGTTGTTATTATTTTCACTGAACACTTTATTATTTTCGCTTTTCCTAATACGTTCTTTTTAATATTCTAATTCAAACATCTTATTTTTATCCATATCTATGGTGATTTTACCATTCTTGATTGCCTCAGCTTCACGTTCATACTTGTCATGATTAAGCCAAATTTTGTAGATATATAAAATTCTACTTTTGTAGTCAAAATCGTAAGCACATCTAAATACAAGCTTATTACCATTTGATGAACCCTTATAAAGATAAGGCCTGTCTATTCCCCAATTTTCGTTATGCATTAGTTCTCCTCTTAAACCCTGATAATTCCTATAATCTTTAAAAAATGAATTTGCTTTTTTTATGAGTCCCATCAACTGGTTTAGAATAAAGTTCCTATACTGCTCATTTTT # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 11 2638696-2639991 **** Predicted by CRISPRDetect 2.4 *** >NC_015949.1 Caldicellulosiruptor lactoaceticus 6A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2638696 30 100.0 37 .............................. TGTCTTGGGATGATAATATCTACGACAGTGTAAATGT 2638763 30 100.0 38 .............................. ACTGCTTCAGCTGCTGTTTCTTTAGCTGCTTTAACAAC 2638831 30 100.0 36 .............................. ATCCATTGCTCTTGTTTTCTTGCTTTATCAACTCTG 2638897 30 100.0 37 .............................. AGAGCTTTCGCGGCATAAACGGTTTCCCCCCCGCAAG 2638964 30 100.0 38 .............................. TTTGGTTTTCATTATTTTATATCATTTTAAAAATCTTC 2639032 30 100.0 35 .............................. ATTTTATACTCTTGCTGTATTTAGTTAAAAAACAT 2639097 30 100.0 36 .............................. GATTATTTTCACAGAGAATATAAATTCTTCTTATTT 2639163 30 100.0 36 .............................. TAGCTTCTTCTACTTTATTATGTTGATTATACCCAA 2639229 30 100.0 38 .............................. GCAAATCTCTTCTCAGGTCTATACGCTTCAACCTTCTC 2639297 30 100.0 37 .............................. TTACTTGAACTAATTTATTATTAAGCTCTCTAACTAT 2639364 30 100.0 36 .............................. TGACAATGCAATGTAAAAAAAAGACTAACCAAAAAA 2639430 30 100.0 36 .............................. ATTTTTTAACGATGCATTCCTGAACAATAATTACAA 2639496 30 100.0 36 .............................. AGCCCTTTTTAAAAAAATTTTAAAAATTTTTTTCTT 2639562 30 96.7 35 .......A...................... AGACGACTTATATTCTGAGCTATGAACATATAATC 2639627 30 100.0 35 .............................. AACAGTAACAATTACATAGCCTATAATACCTAAAC 2639692 30 100.0 37 .............................. TAATGTTTAAGCGGCTCGCAATTGCGAGCCGCCGCTT 2639759 30 100.0 38 .............................. GTAAAAGTCCCTTCAGCTTCTTTAAATCCAAAACTTTC 2639827 30 100.0 38 .............................. ACATTTAGTAATAACTCCACCGTCCCCTCTTGCGGGTT 2639895 30 100.0 37 .............................. GGATACTTTTCATGGAATGCTAATCTTATGTATGCTT 2639962 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.8 37 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : GCCGTACAGCCTGAAGTCGTAGCAACTTTATATGGTATTCACATCATAAAGAAGAAGACTAATTCCAATTCACTTCTGATAAAATTTCCAAAGCAAAATTTATTTGAAGTGAAATGACTTTAAGAGATGTTTATGCTTTTCAAAGTACCTTTGATTCGGCTCAATTTCCCCGGAAAGTTAACAACAAGGCTTTTAGATTCGAACATGATCATATTATGTATATTTATCTATGAGATCCTGCATAATGTATTACTTTGACCAAAAGTCACATCCGTCGACCTCAGGTGCAAAATTTTTTGAGTTTGGTTTGTATTCGGTTTCATGTTTTTGGGATGTGGCTTTGAATAGGTTTCTGGCAGCAGTTGGATAGACGGAAGGCTTTTAAAGGCTTCTTCCTTTTGATGCAGCTGGATTTGTGTTGATTTTTAAGGGGTGTACTAAAATAAAAACATTGACAGGGGTGCATAAAGTTGATATAATAAAATCAAGCTTTTTAACCT # Right flank : CCTTCGAAAAGACTCAGCTATGCCTATCCCATGAGTGGCTGGGCAATTGGAGATAATGGAAACTACTAGAAATGCATTTCTTTTTTTAAAGATTCTGAAAGCTTTTCTTTTTTGTTTTCTGGGGCATAATAAAAAATGACAGGATTTCAGCAGGTGGCTTTCGTTTGTTACCCTTTTAAAAAATGATTTTTCTATTTTTTTATTTGCTGGAACCTGGAATTTTCAGTTTTAGATGTAGTTCAGTAAAAGTTAAAATTTGCAATAAAATGTTTGACGGCGTTTAAGTTTGAAGTTTACAGGTTAAACAGTAGTTCATGAGGAGCAAATCCGTATTTTGTGTGGACTACTATTTTTTCGTTTTTGTTCACAGTTTCAAAAGAATAATACTTGTAAGTTCGACATTCATAGTTTGCCTGTTAAGAGTTACACTTTGTAGGAGTTTGGCCCCTAAAGTGAATAATGCAATCCTGTAAAAGCTTTTTATGGTTGTCGGCACTTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //