Array 1 5342-6234 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXQL01000016.1 Riemerella anatipestifer strain RCAD0282 Scaffold16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 5342 47 100.0 29 ............................................... CTATTTTGTTTTTTAAGTGTGAATTGTGC 5418 47 100.0 30 ............................................... TTCTACAAAGTCTAGCCACGCACCCATAGC 5495 47 100.0 30 ............................................... ATATCACGAAAATTTAAAGTTTAGCGACAC 5572 47 100.0 30 ............................................... AGCCTCTAACTCATACGCACAGGCACAGGC 5649 47 100.0 30 ............................................... CGACAACTTTTTTTGGGTGGCGCCGCCAGA 5726 47 100.0 30 ............................................... TTTCGTACATAAATTACGCCTCGTGCGTGT 5803 47 100.0 30 ............................................... TCTTTATACTAAGAGCATTTAGCAACAATA 5880 47 100.0 30 ............................................... TATTTTCCAAACAGGCGATTTGGCGGGTTA 5957 47 100.0 30 ............................................... TTTATCGCTAAAATTATTAAGGGCAGGAAA 6034 47 100.0 30 ............................................... CCACCAGTAGGGTGGATGAAGAAACTGAGG 6111 47 100.0 30 ............................................... TAGAAAAACTAATCATATTATCCCCTACGT 6188 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 100.0 30 GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC # Left flank : ATCTTTGTGGTAGTTTGTAGCTTAAATTTATTTTTTATGAAGTTAGATTTTGAGTTCAAAATCAGTTTATGAAAATGAAAAAGGTTTTAAGTTTGTTGCGAAACTTAAAGCCGAGATGAAACAGAAAATTCCCAGTCTGTTATATCCTGAAACAAAGGAGGCTTTGTCCCCCTTACTTCTAAAGGCAAATTTAGAAATATTTTTTCAAATGAAAGAATTTATAAAATTGATTAAAAATATTTTCTCGAAAGAACCATTTGAGCAAGATATAACTATTAGATTTAGTTTATCTTTAGAGCAGATAATATTTATTTTTTAGCTTTAGCAGGAATGATATACATCTTCTTAAAATAATATTATGAAAATAGAAGATATACATACCTCGTGGATACAGGAACAGATAAAAGAGCTAGGTATTAAACGAAAAGACCTAACAAAAGACCTGTTACTAGATAGAAGTTATTTAAGCCATCTGTTTTCTAGTGATGACAAACCGCATA # Right flank : CCTCAAAAAATAAACCCGTTGTTTTTCAATGGGTTTTGCTTTTTATTAGGATTAGATTTTTCACTATTTCTTGTCTATTTCTACTTTAGTAAATCCTTTTTTCTGTTTCTAAAAAAGTTCTAATTGCTGATAGGTTGGTTTGGGTTCTTCTTTAGCTCTCGCAAAGAAAATTTCTATATCTCCAAACTGTTTATCTGTAATACTCATGATAGCCACCTTACCGTGCTTGGGAAGTATTGATTTTACTCTTTTGATGTGTACTTCTGCATTTTCACGACTTGGGCAATGCCGTATATAAATGGAAAATTGGAAAAGACTAAACCCATCGTCTTCAAGCCGTTTTCGGAATAGCTGAGCCGCTTTACGCATCGCTTTGGTTTCTGTTGGTAAATCATATAACACCATAACCCACATAACTCGATAAGCATTAAAACGATTAAACTTCATAAAACTCAGGCACAGATAGTTGTCTTTTTTCTCCGGTATAACATTTATAAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,4.5 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //