Array 1 1105381-1106019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061749.1 Escherichia coli O15:H12 strain 2273-PO3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1105381 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 1105442 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 1105503 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 1105564 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 1105625 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 1105686 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 1105747 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 1105808 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 1105869 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 1105930 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 1105991 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1131721-1132787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061749.1 Escherichia coli O15:H12 strain 2273-PO3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1131721 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 1131782 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 1131843 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 1131905 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 1131966 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 1132027 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 1132088 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 1132149 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 1132210 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 1132271 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 1132332 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 1132393 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 1132454 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 1132515 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 1132576 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 1132637 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 1132698 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 1132759 28 72.4 0 .AA........C..T....A..-.C...C | T [1132778] ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //