Array 1 162940-161042 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTO01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain inss29 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162939 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 162878 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 162817 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 162756 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 162694 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 162633 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 162572 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 162511 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 162450 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 162389 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 162328 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 162267 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 162206 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 162145 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 162084 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 162023 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 161962 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 161901 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 161840 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 161779 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 161721 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 161660 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 161599 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 161538 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 161477 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 161416 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 161355 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 161294 29 100.0 11 ............................. CGGCCAGCCAT Deletion [161255] 161254 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 161193 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 161132 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161071 29 93.1 0 A...........T................ | A [161044] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180838-179222 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTO01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain inss29 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180837 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 180775 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 180714 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 180653 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 180592 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 180531 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 180470 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 180409 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 180348 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 180287 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 180226 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 180165 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 180104 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 180043 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 179982 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 179921 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 179860 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 179799 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 179737 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 179676 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 179615 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 179554 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 179493 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 179432 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 179371 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 179310 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 179249 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //