Array 1 453936-455392 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKR01000001.1 Salmonella sp. S098_03630 NODE_1_length_579627_cov_169.876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================== ================== 453936 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 453997 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454058 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454119 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454180 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454241 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454302 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454363 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454424 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454485 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454546 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454607 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454668 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454729 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454790 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454851 29 100.0 58 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTGACATTTTATTCAGTTCGTTA 454938 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 454999 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455060 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455121 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455182 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455243 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455304 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455365 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================== ================== 24 29 98.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471524-473488 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKR01000001.1 Salmonella sp. S098_03630 NODE_1_length_579627_cov_169.876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 471524 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471585 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471646 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471707 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471768 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471829 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 471890 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 471952 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472013 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472074 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472135 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472196 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472257 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472318 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472379 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472440 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472501 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472562 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472623 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472684 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472745 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472807 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 472868 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [472910] 472910 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 472971 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473032 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473093 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473154 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473215 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473276 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473337 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473398 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473459 29 96.6 0 A............................ | A [473485] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //