Array 1 51-933 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMX01000078.1 Escherichia coli strain MOD1-EC5060 EC5060_78_length_39062_cov_54.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 112 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 173 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 234 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 295 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 356 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 417 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 478 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 539 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 600 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 661 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 722 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 783 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 844 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 905 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGAATTTTGGCAGCGTGTAAAATCCACTTTTCAGG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-445 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMX01000141.1 Escherichia coli strain MOD1-EC5060 EC5060_142_length_483_cov_92.56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 112 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 173 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 234 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 295 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 356 29 100.0 32 ............................. CCGCGCACGTCGTGCGGGAGGGGGGTTCTGCG 417 29 89.7 0 ..............C.........CC... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGACACCTCTACTGACGTTCCTGAACAAGAAGATG # Right flank : AGACCAGAACTGCGGTGCCTGAACAGGAAGATGAGTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //