Array 1 146795-146458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXHW010000006.1 Lactiplantibacillus argentoratensis strain BSR19 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 146794 28 100.0 33 ............................ CATCTCGTTCACTTGTTTGTCTTTTTCTAATTT 146733 28 100.0 33 ............................ TACATGGTATCAACCGTGTCAACAATCGTATTA 146672 28 100.0 34 ............................ CTAGCCACTGACAATCCGCAATTAGGTAATAATG 146610 28 100.0 33 ............................ TCAACAATTGATACACTCAGTCAAAAGGTTACC 146549 28 100.0 33 ............................ TCCACCAGTTACAGAGGAAGACATACCTTTGAT 146488 28 100.0 0 ............................ | ATG [146464] ========== ====== ====== ====== ============================ ================================== ================== 6 28 100.0 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCGGGGCTGGCTTTGAGCTGGTTGGTCATCGTGAGACGGAATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCTATGCTTCACCGAGCTAAAGGGCACGGCGTTCGTTTAAGTCGTGTGACATTTGAAGGGCTCCTATGTGTCAAGGACCTACCGACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTAATGACAGTCATTCCTGAAGTACAGTGATTGACTTTCATCGGTGTTTACTGGATTGGTGGGCCCGGAACCAGTGCTGGCGAACCAGGTATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGTTATCCTCGAAGTCAAGCTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGGGACGGGATCTGTCAAGT # Right flank : TTGGCTTGAATGCAGCAGTGACCCGTACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGAACCAACGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTAAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACGCCGGCGAACATTTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAGGTGATGAGCGAGATCAGGAAGATCAGCGTTGAGACAAAGAAGAATAGGGACCAGATGATGCTCAGCGTTTGATCAGTAATAAAAGCCCATTGCTTCAAATACTTGCCGGGATGACTGGCAACTCGTTTAAAGTTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155113-155751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXHW010000006.1 Lactiplantibacillus argentoratensis strain BSR19 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155113 29 96.6 32 ............................T GTGTCCCTACTGGTTTCAAAAACATACCGGGT 155174 29 100.0 32 ............................. TGTATGGTCGGTCGTGTAAACCCAAACATCAG 155235 29 96.6 32 ............................T CACCTGACCACAGATCATTATTACCTTGCTTT 155296 29 96.6 32 ............................A AACATTTGCCCCGCGTCATAATATCTTTTTAA 155357 29 100.0 32 ............................. ATAGAATGTTTGGACTCCATTTACTGCAAGTA 155418 29 100.0 32 ............................. AATCAGAACCGGTTAAACCGGCTGTAAAGGGG 155479 29 96.6 32 ............................T GAAACCTCTGTTACTGTGATCAATGGTTATGG 155540 29 100.0 32 ............................. ACTTGCCGCACGGCATTTTCATACTGACGAGC 155601 29 96.6 32 ..............C.............. GGTTTCAAAGCCGCTAAAGACACTAAGTCTGG 155662 29 93.1 32 ..........................T.T AAGCAGATTGCCACGTTACAAGAAACCATCAA 155723 29 86.2 0 ...............A.......A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : CGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAGCTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTATGTGAGCAAGAATCGTTGAAACAATAAATAATTTGCTTTACAGATGAGATATGCCTGTTGCAAACCTAGTACTTGGTGTTCACCGCATAGTTATTAATCATAAAGTTATCTCCTAGCATTTTGTATCACATAATTTGTGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCAATACCATGAAGGCCGCCTTGCTATAAGGCCCCCTTGCTTGTTTCGTCATATTAATAGTGTTTATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTGCTGCTATAATAGGCTTTGTTTAGT # Right flank : AAACAAAGCCATAGATAAAACAACAAATCACTTTCGAACAACTGCGACTTCACAAATATAAAAGTGCATATTTTACACATCAGCACTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATATGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCATTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTTACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCTTTCTATGTCATTTTCTATAAAAGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTATTACCAATAAAGACCTTCATTTCACTCAACGCCATAGCTATCGAAACGCCTTGCTCATTAAGCATGTCACGTGTGATTCCAGTAAGCGCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAGTCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 160236-160753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXHW010000006.1 Lactiplantibacillus argentoratensis strain BSR19 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 160236 28 100.0 33 ............................ CCGGGTATGCTGCGGTTTGATGGTGAGCACAAA 160297 28 100.0 33 ............................ CAGCAGTGGGACGCCCGTAGACAGACTTTTCGT 160358 28 100.0 34 ............................ TAGCCGTGAAGTTCTAATGAAAGTTAGTGATTCA 160420 28 100.0 34 ............................ TCACAACTTTGCTCATATTCGTGGCACCCGACTA 160482 28 100.0 33 ............................ TATGGTATTTTTCTCTCATCTCATCGCTTCCAT 160543 28 100.0 33 ............................ CCTAACGTGTGCTTGTGGCGGAATAGGTAGACG 160604 28 100.0 33 ............................ CTGTGGGAATCTTACCGACAGGGAAATGCAATT 160665 28 100.0 33 ............................ TTTACCACCAATTTATTGCTATGAAGTCCGGCT 160726 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ================================== ================== 9 28 99.2 33 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : AAAACCGGCGCCCAATCGATCTTAAAAAACTAACCAAGAAACGCGGAATATTTGCTTGGAAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACAATATCTTAGAAACCATTGCGGGTTTGCTTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAGATTGTGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGCAAGGTAGTTATTGAAGGATGGAAATGAGTTGGCGTGTATTACGGCTCGCGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTATTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : TAAGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGACTCGCTTATTTTAGCATCATTCCCCGCTAAAACTACCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTGAAATTGGCATTTAAAACACCACTGGCTGATCAAATGCGCCCGCAATCACTGGAACAGATGGTCGGGCAACAGGATCTGTTGAAGTCAGACCAGCCATTACGCCAGATTATTGATCAACATGTTAATATTCCCCTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTAGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACCAAAGCCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTAAAACATTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //