Array 1 55161-53617 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBDR01000006.1 Methanohalophilus euhalobius strain WG-1MB, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 55160 37 100.0 38 ..................................... AAAATAGATGATGACATACTCCAAGGCGGTATGCTTGA 55085 37 100.0 36 ..................................... CCAGATGCACCTGTCAGATCAAGCCCGTCACCACGT 55012 37 100.0 38 ..................................... TTACTATAGTATATGTCATCCCAATCCGGGCGGGCGAA 54937 37 100.0 38 ..................................... GCAAACCCATATGTCACGAATTTACCGTCATTTATTAT 54862 37 100.0 38 ..................................... AGCATGTATTGAGTGTACCGATTGTGGTACACTTTTAT 54787 37 100.0 43 ..................................... TAGATAGCAATTCGTGGACAGTCAGTCTGTCTTTTTGGACATT 54707 37 100.0 40 ..................................... TTAATCTCATCCTCTAGCTGTATAATGTCCGATTGAATCA 54630 37 100.0 40 ..................................... TGTACGTTTGTCATATTGATAAAACCTGTTTGCTACATCA 54553 37 100.0 40 ..................................... TTGCCTTCATTTTCTGTTTGTATTTCCTGCATGACGACTT 54476 37 100.0 38 ..................................... CCTGTGTGTTTCAGGTGGCCTTTCGGCATTGGCTTTTG 54401 37 100.0 37 ..................................... CATTTGCTTGTTTGCGAATTATCATATCATCAATTTC 54327 37 100.0 35 ..................................... ACAACTCCTTAGTAACAACCAATGTAGACTCATCT 54255 37 100.0 36 ..................................... TTTGGGTCCTGCGAGCCCAGGGATAGTGGAGATCCC 54182 37 100.0 39 ..................................... ATTTGATTTTTCTCATTGTTGGCACAAACTATATATATT 54106 37 100.0 40 ..................................... ATAAATCAATTCTGCTCCTGTAGGGAGATCGAAATATTCC 54029 37 100.0 42 ..................................... TTTGTTCTGTTTTCGGCCTGTGTCCAGGAAAATTCCACGTGG 53950 37 100.0 36 ..................................... CCAGTTCACCTGCGCAATATTTGAGATGAATATTGA 53877 37 100.0 41 ..................................... GCAGAGGACAGGCCAACATCTGCAAGAGTCGCAACAATTTC 53799 37 100.0 37 ..................................... TTGTCATTGTACTCTACCCTAGCTACTATTTCGTCGT 53725 37 81.1 35 .....A.GT...T....A..A..T............. TACTCAATCTCAAAATCTTTCTTTTCTGTGTTGTA 53653 37 81.1 0 .....A.GT...T....A..A..T............. | ========== ====== ====== ====== ===================================== =========================================== ================== 21 37 98.2 38 GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Left flank : TGACGTTTTGATTAGTGGATATATCCACCTGTACAACCGTGGTTATCATGACACTCTAAATAATAAGAAGAGGATTCATATAAACTTATTGTATTTATTCTGTACAGGGAGTTATTTCTACATGAATTAATGCAATAAACGCACCTATATGATTTTAAATCATGAATACGTCATAGATTTAATTCGATTAATGAACTATGTGTAAAGACCTTTATAAGGGGTTGAGCCAAAAGGAGGTCTGTACACACAGATTATCATTTTCAGGCAATTGTGGGTTTAATTTAACCTTAAACAGACATTGAATATTTATCAATCTTTTTATTATGAAGCCTGCAGATAGTGTTTTACTGATGTTAACAGCGTTAATTTTCACGACGCCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGTATTCTAAGGTCTCCAAAAAGGATTTAAAGGAAAAAAACATAGG # Right flank : TCGTCATCGACGAAATGGAGATCTATTCCTTGATTGATCAGTTTCAAATATAAATTCATCTCTTTTGAAACAGGAGATTCCTTCCGTAAGGTAGGAGAGATAAGAACAAATTTTATCGAAGTTCTGGAAGAGTAACGTTAATCTGAATCCTTAATACTACTTTTTCAAATTAAATCACCTCTAAAAAATACAATGAAGTCCTACCTCTCCTAAAAAACTGAAATAACAAAACTTATACAACTTACCATCAATCATTTGCTGGAAAAATAAAATATGAATGGGGTACTAAAAAGTGGGAGATATCAAACTCAATCCTTCACAATCACAGGCAGTTGATTATACAGACGGACCACTTCTAATACTAGCAGGTCCTGGTTCTGGCAAAACCCTGACCATTACGGAAAAGGTCGTAAACCTTGTGGATGAAGGATTTTCTCCTGACCGGATACTTGCCCTTACCTTCTCTGAAAAGGCCGCAGGTGAGATGGAGGAGAGAATTG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 68241-69196 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBDR01000006.1 Methanohalophilus euhalobius strain WG-1MB, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 68241 37 100.0 40 ..................................... ATAAGTTAAGTTAAATCAATATTAATTGATAAAGTAAAAT 68318 37 100.0 35 ..................................... ACTATATAAATTAATTCATGTTTAATTTCAGTTCT 68390 37 100.0 39 ..................................... TTACATATTGGTTACTATCATCCAATTCATATACGCTAA 68466 37 100.0 41 ..................................... ACCTGTGCACCCATTTCAGAAGTAGCATCTGCACGTATCTT 68544 37 100.0 38 ..................................... AACGGATAGTCATATTTTTTCATTACATGAGGATATAA 68619 37 100.0 40 ..................................... TCACCCTGAACTCATACGGTCAAATCTATACGCTTAATGT 68696 37 100.0 40 ..................................... TTAGCAGCCTCCGTTTTGCTCATTCCCAATTTAGTCTTAA 68773 37 100.0 39 ..................................... TACCTGTTAGGCCATACATAGGTAGTAGTGCTGTAATCT 68849 37 100.0 37 ..................................... AGAACTTAATTTTCCAAGGTCGAACGGTGCATTATAT 68923 37 100.0 46 ..................................... TCGTGTGGCTGTGGTGCCTTCTCCTTCCACGTTTCCAAATTTTTAA 69006 37 100.0 40 ..................................... CGCCTGCCTCATGCGCATAAAACTTATCACATAGATATGT 69083 37 100.0 40 ..................................... CATTTTCTGTTTTGAAATGGTAGTTTTTACCATTTTGGGA 69160 37 83.8 0 ....................A..T.......AC.TC. | ========== ====== ====== ====== ===================================== ============================================== ================== 13 37 98.8 40 GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Left flank : TGGTTTAATGAGAATTCAATATAGTGTTTTTGCAGGTGAAATTCCTTCGAATAAAATAAATGAATTGTCCTCCCTACTATTTGACAGTAATCTAGCAGAAACAGATAATATCACAGTATTTCCTTTATGCAGGGAATGTCTGAATAATGTCCTTACATTAGAACCATTGCCTCAGGAAATCAAGCATCTGTCATTATGATGTACAGACCTTTATAAGGGGTTGAGTAAAAAGGAGGTCTGTACACATATATTATCATTTGTAGGCATCAATGATAGAAATCTTGCCTTAAACGGACATCGACTTTATATTAATATTTTTTTGATGATGGCACTTGATAGTGTTTTACTGATGTTAACAGCGTTAATTTTCACGACGCCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGAGTTCTAATGCCTCCAAAAAGGATTTAAAGGAAAAAAACATAGGG # Right flank : CTTTTGCAATCTATTTAGACTATGTGACAAATTATCCACTCAAAGAACGATTTGCTCAATAATTATAGGTCGATGAACATGGAACTTAATGAAAAAATGTATTATGCTTGCTCATTATGCAGTACAGAAGATAAGGTTGTATGGCACAGACCAAAAACGAAGATCTGGCAAGAACACAGACGATACATCGATTTAGATCAGACAAATTCAGAGACTCCACAATACTTCTGGTGTCTAAAACACAATCGTGCACATTCATTGAAAAGAGAATGCCTGAAATATAAGGCTACAATTACTTTCAATGGTAATGAAGGAAATAGGGATTGTAATACAAAACAATTATCCCATAACGACACACTTGATGAAATCAGAAAAACCGTTACTGAAAAGTCCAATCAATTGGATTGGAAAAAAGTTATTGGCAGCAACAGTCTTCCATATCCCTGCACCAGGGAATCAAGGTTGATATTACCCGACATAATATATTGTCAGCGTGATCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2557-100 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBDR01000018.1 Methanohalophilus euhalobius strain WG-1MB, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2556 37 100.0 36 ..................................... CCCATACCTACTCTAATTTCTGTTGCCATTTGTTCA 2483 37 100.0 37 ..................................... ATCAATGCATTAATTGATTCATGATAACTTAGTAAGT 2409 37 100.0 37 ..................................... ATTCCATGTTCTTTAATTCCATTCATGATTAAAACCA 2335 37 100.0 35 ..................................... TCGATGTAGATTTCGTTTGGTTCAATCGTAGATTC 2263 37 100.0 35 ..................................... TTGTTTTCTTTTAGTTCACTGAGTAGTTCTCTTAC 2191 37 100.0 35 ..................................... AACAATGTAGTCCTTGCCATGTTCACACAACCTGT 2119 37 100.0 37 ..................................... CACTAATGGTACATTAGTACCAATTGCAACAAATCAA 2045 37 100.0 35 ..................................... TTGCGGCCTTCTTTTCACTTATACTGACATTGCTG 1973 37 100.0 35 ..................................... TTATCGTTCACCAGCAATACAGTTCCATATGGCAT 1901 37 100.0 37 ..................................... TTCATCACCTCAATACACAAATACATTTCCATCTGCT 1827 37 100.0 36 ..................................... TTGGTACATGAACATCTCTCATCAACGCTTCCGTTA 1754 37 100.0 38 ..................................... ATGTTATCATGATGTAGGTAGATGTTAGGTACATGATT 1679 37 100.0 38 ..................................... GATATTTTCTATAATCTGCTTTTAGGTATGGTTCACCT 1604 37 100.0 35 ..................................... TTAGTATTACCAACTGATGGATTAAATTGTGGGTT 1532 37 100.0 40 ..................................... GCGTCTGCAATTGCTTTACTGATATCTGTCTTAGACATGC 1455 37 100.0 36 ..................................... CTTTTACCTTTCTTTTTATAGGTAAACTTCTTCTCA 1382 37 100.0 38 ..................................... TGTCATGCTATGTAGTCATCAATCCAGTATTACGAATG 1307 37 100.0 37 ..................................... TTTGATGTAGTCTACATCTATGTACATGTATCATGGA 1233 37 100.0 37 ..................................... ATATTTTATTCGATTTGATACTAACAATAAAGGATAA 1159 37 100.0 36 ..................................... TGGATTGGTTTGACGGGGCTAGCCGTGAATGCAGCG 1086 37 100.0 35 ..................................... ATAAATATATGGTTCTGGACAGAGATGAAATTAGA 1014 37 100.0 34 ..................................... AACGCCACACAGACGCTCTCACAGCCCCAAATCA 943 37 100.0 35 ..................................... TAATCTCGCCGGACTTATACAAATGTATATAGGTT 871 37 100.0 39 ..................................... AAATCAGCATATCGAATATGGAATAGGTGAATAAAATGG 795 37 100.0 37 ..................................... ATTTCCTCTTGTTTTTCATACTCTCTGATAACATCGA 721 37 100.0 37 ..................................... TACTTATCATCCAATTGGTTGATTGCCTCACCCAATG 647 37 100.0 34 ..................................... AAATATATTCTAGGTAATACAAAGAAGGAAGAGT 576 37 100.0 38 ..................................... ATATCTCCGCCGTGAGTATCTCCCTCTGTCCATGTGGT 501 37 100.0 35 ..................................... TATGAATGAAGTCTCAATGCATGAGTATGATACTG 429 37 100.0 35 ..................................... CTTTGACAGGCTTTTCTTTTCGACTGCTGCTCTTA 357 37 100.0 37 ..................................... AAAAATATTCCTCTTGAAGCGGTGTCTTGTGTTGGAA 283 37 100.0 36 ..................................... AAAAATATTCCTCTTGAAGCGGTGTCTTGTGTTGGA 210 37 100.0 37 ..................................... TCTGAATTCGAATAACAGGTCTTCGAATTCGAATCGG 136 37 89.2 0 .............................GC.T...G | ========== ====== ====== ====== ===================================== ======================================== ================== 34 37 99.7 36 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ATATAAACGTCTTCAATTGGTTGGTGACAGACTTGCTGAAATTGAATCATTGATCGATTGGAAACCTTTTCGACCAATCTTAGAATCGATGTATAAGAATAGAACAGCTTCAGGCGGCAGACCTGAAGCTGATGTTATTGTGATGTTCAAAATGCTTGTTCTGCAGCAATGGCATGGTTTATCTGATCCAGAACTTGAAAGACAATGTATTGACAGAATATCATTTAGAAAATTCCTAGGATTTCCTGAATATGTACCAGACAATACAACTGTCTGGTCATTCAGAAAGAGAATTATTGATAATGGGAAAGAGAAGCAAATATGGAATGAGATGCAGAGACAGCTCAATGCTCTTGGTTTGGAAATCAAAAAAGGAACGATCCAGGATGCAACTTTCATTCACTCTAACCCTGGTCATGCTAAAGCTGACACACCCAGAGGAGAGGATGCTAAAACAACGAGAAGCAGAGATGGAACCTGGGTGAAAAAAGGAGGTAAAT # Right flank : GTACATTAATACAATTCAGGAGATAACCATGAACAACGCTGATGAAATCATAAAATACCTTGATATGAGCAAGCACCCCGAAGGTGGGTTTTTTAAAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 6082-5172 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBDR01000018.1 Methanohalophilus euhalobius strain WG-1MB, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6081 37 100.0 35 ..................................... AACGATTTCCCCGAGTTTGAGGACAAGGACATAAG 6009 37 100.0 35 ..................................... TTGATCATATGTATACGTTTCACTCCGTCTTTTTT 5937 37 100.0 35 ..................................... TCAATAGAAGAAGAAGCGGTTTTAAGTGCGTTAGT 5865 37 100.0 35 ..................................... ATGGATCGTTAAAATTAACTTAAAATTCTATGCTA 5793 37 100.0 37 ..................................... GACTCATGATACACATGCACAGCACATGCACCATAAT 5719 37 100.0 36 ..................................... AACAGTACCTGCCGATAGCGTTTTTAAATTAGTGCG 5646 37 100.0 38 ..................................... TTCAATGCATACATAGTTACCACTCATTGCTTAAAAGG 5571 37 100.0 36 ..................................... AAAATTCTGAATATCCGGGGCTTAATTTGTTCTTAG 5498 37 100.0 35 ..................................... TTTATGTCCTGGTTAAAGCCCAGGACCAGGACGCC 5426 37 100.0 37 ..................................... GATTTATGGTCTAAGGTTAGTCTTAAGCATGGTCTAA 5352 37 100.0 33 ..................................... ATCAACCCTTTTATCGCATAGTTGCGGTTGCTG 5282 37 100.0 37 ..................................... ATTCCATTAACCAGGAAATAAACATACTGGAACGTAT 5208 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 36 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ATCTAAAGAAAGAAATGTTTTTGTTGCCTCAAAAGTAAATCACATTAAAGGAATTGTTGATGAAGTATTGTTTCTCGAAGACGGGACCGCTGCTCCTCTTGAATATAAGTTTGCAGAATATAAAGACAAAATTTATATGACTCATAAATATCAGCTTTATTTGCAGGCATTGATGATTTCTGAGAATTATGATGTAGAAGTCAATAGAGCTTATATTTGTTATACACGAAGTAATAATATGGTCAAGTCTATTAAAATTGAACCTGAGGATGTGGATGAGGCTATAAAAGTTGCCAAAAAGACAATTGATATAATAGAAAAGGGAGTATATCCAAAGGCAACAAAGTATAAATCCAAATGCATTGATTGTTGTTATAGAAATATTTGCGTATAATTCTTGTATTTATAAGGGATCTGATAGAAATGGTTCAAGAATTGAGATACTTGAAAAGGAGGGATATTAGGGCTTCTTTTGGACAAAAGAGGGTGAAATTTGTGCT # Right flank : GCTAAGAGGAAGCTTGTATCCAAATATATTTCCGAGTATCAGGAAAACCATACGAAAGATGGCCTATGATCCGAAGGGATTTCTTAATTTTTTCTATTTTTGGCTTTGTAGAAATTTTCAATAATACAAAATATACAATCTTAACATACTGTCAAGATTGTGTATTAATACCTTGAATTTCACTTTTTTACCAGTGTACATCAAGCAAGTGTTCCACGTGTACCAACTGCTCCATCATTAATGGTTCCAAATGGAAGAAGATGGGGTTCTCTAAGGGTACGTTGCATTATATGAAGCGGAGGCAAGAAGTGGCAGTCGTTTGCTCTCATGCTCATGTAAGGGAGAGGTTAGAAGAGTTGGGGAGGGGCTGAATGAATCAAAACTCTTACTCATCAGATATAATTTCATCAGAAAAATTCTCATTTGTTTCTGTAAGGCATTCTGTTTCTTGAGAAGTTGTACAAAGACTGTGAATTAATTTTAATGTATAGATTAAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 3350-11116 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBDR01000002.1 Methanohalophilus euhalobius strain WG-1MB, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 3350 30 100.0 37 .............................. GAACTCTTGAGAGTTCATTGACGTCAGCCTTCTCAAT 3417 30 100.0 36 .............................. CACAGTTTGCAGAACTTGACGGCAGCGTATTGTCAA 3483 30 100.0 38 .............................. TTCTCTCACCTCATATTCGAATACTTGTTACACTGATA 3551 30 100.0 37 .............................. TAATACACATATCCATCTGCGCTGGATATATTATTGT 3618 30 100.0 34 .............................. TGTTGGCAAACAATCATTTATATGAAACAGACCA 3682 30 100.0 36 .............................. GTTACTTCCTGTGATGGTATAAATATTTCATCTACG 3748 30 100.0 35 .............................. GTTCCGTGGGTGCGTATTAATGATCCACAGCCTGC 3813 30 100.0 36 .............................. ACTCAAAAGGCGACACTTTCGAGATGCCTGTCAAGG 3879 30 100.0 38 .............................. TAAGCGCGCCGGGTTGCATTTCCTTTCCTCCTTTTTTT 3947 30 100.0 36 .............................. GCATTTAATTCTTTTTGGGAAACTATAAAAGATTTA 4013 30 100.0 36 .............................. AGTCTTACCTTCTATCTTACCTTCTTTCATGTCATC 4079 30 100.0 36 .............................. ACAGTATTTGAGGATTTAGAACATTACAAGAAACGT 4145 30 100.0 35 .............................. GTTTATGTCGATATGATAATGCATTGATACAATTA 4210 30 100.0 38 .............................. ATAAGTTCGGCTTCATTTTTATCTACCAAACCTTTCTT 4278 30 100.0 35 .............................. GTTATCGCTGTTTTTGTTACTGCATACGCCAGACA 4343 30 100.0 36 .............................. CATGCTATTTCGTTCTGGAATGGAACGACGTATTCC 4409 30 100.0 35 .............................. TTTCCTAGTCTTATACTATCTAAAACATTGCAATC 4474 30 100.0 37 .............................. TTAATCAGTTTGTACTTAGGTTGTTCGGGTTGCTTTG 4541 30 100.0 35 .............................. ACCAAGGCGTTTAGTATCGAAACCAGCAGGTATGT 4606 30 100.0 40 .............................. GACGATGACACAACGATGGAAATAATACATGTTGGTTCAC 4676 30 100.0 37 .............................. GATGCACTATCGACAGTATTATAAGTAATCTGTGGTA 4743 30 100.0 35 .............................. GAAATTCTGTTGTCTTCATCAAAAATAATATTATA 4808 30 100.0 37 .............................. TATTAAATATGTATAAGCATATAAATGAACTGAAAAA 4875 30 100.0 36 .............................. GACAGATTGGATTTAGTACAACTGCTGAAATGGAAG 4941 30 100.0 36 .............................. TCAAATAAGCATACCTTATATGGAACAATACTGATA 5007 30 100.0 36 .............................. GTAGTATGCTCACATTTCCGCATTGATATAGCACAT 5073 30 100.0 36 .............................. ATGACGTATCATTATCAGGTGTAACAAACTCAACAC 5139 30 100.0 38 .............................. ACATTAATGTACATACATGTACAATGAACAATGGCTAT 5207 30 100.0 35 .............................. GATATTGGTGGTAAAGAAGTTAGAGGTACGTTTAA 5272 30 100.0 37 .............................. TCGATTAAGCACATATCAAAGGTACTTATGCAATTCT 5339 30 100.0 36 .............................. CCTCATCAATGGCTACTCCAGACATACTCCAGTAGG 5405 30 100.0 35 .............................. TCAATTAAGCACATATCAAAGGTACTTATGCAATT 5470 30 100.0 36 .............................. TACATTACCCCAGAGATTTTCGATACCACGATAGAC 5536 30 100.0 35 .............................. ATGTTTGGCACTGAACACTCTAAAACAACGTTTGT 5601 30 100.0 36 .............................. ACAGGGGAGGGAAAAATAGAAGACTACACGGAACAT 5667 30 100.0 35 .............................. GCAACAGGTGAAGTTACTTATGGAAGCAATCCTAG 5732 30 100.0 36 .............................. ACTGTGTGGTAGAGTATTTCCCCAAAAAGCGCAATG 5798 30 100.0 35 .............................. AAAACAGAGCTGCATACCACGATGAGCCAGGGAAA 5863 30 100.0 35 .............................. GAAAACCACAGAGCAAGCCCCTGTGGATCAACAGG 5928 30 100.0 36 .............................. AAGCCAAACGGTGAACCGTCATCATTCATAATAGTC 5994 30 100.0 36 .............................. CCGGCGAGGATGTCGATGAAAAAAAGTATGATGATG 6060 30 100.0 36 .............................. ATAATAACGGATAAAATACAGAATAAAGTACAGAAT 6126 30 100.0 36 .............................. ATCGTCCACAATTCCATTAGGGGCAACCACTCCAGA 6192 30 100.0 36 .............................. GGACTTTCAATACTGGGCATTTCTATTTGTGGAGCA 6258 30 100.0 36 .............................. GAAGATGATGTCGGTGGAGGTGTCTTCTAATGCCAG 6324 30 100.0 36 .............................. GATATATGATGCATTGAGCCTGTAATCATAGGAATA 6390 30 100.0 36 .............................. ATAATAGGGGCCAGTAATCTTTTTAAGGTGATTATA 6456 30 100.0 38 .............................. ACATCAGAAAGGATCGATATGCTTTGTCGTGCAAAATC 6524 30 100.0 35 .............................. TAATAAGGATGTATGAAACATGCAACAAAAAATAA 6589 30 100.0 37 .............................. TCTGCTCATATTTCTTGTTGTTTTCCGTCTCGAGGTG 6656 30 100.0 36 .............................. TCTCTAATCTTTTCTTCAAGTACTGCTTCAAGATTA 6722 30 100.0 37 .............................. GGGAATCAAAGAAGGGCAAAAACTACCGTGATGCTGT 6789 30 100.0 36 .............................. CCATAGATTACGATATCTGCAGGCGATGAAAGGAAT 6855 30 100.0 35 .............................. GTAGTTATTCAACAATGGGTTATGCAGGGCGCTCT 6920 30 100.0 38 .............................. TTCAATTTGAAATTTGAGTGTGAAGAACCTTATGCATA 6988 30 100.0 36 .............................. TTATGCCTCACTCCTGATATACGAACGATGCATTGA 7054 30 100.0 36 .............................. ATTGATTGGGCAATTGAACTTGCTGACAACACACAA 7120 30 100.0 36 .............................. CGAGAATATACCCAATCAGACTCATGCCCGAAAAAA 7186 30 100.0 40 .............................. AACCTTTTTATTTTTATTTATTACTGGTGTACCTGATATT 7256 30 100.0 36 .............................. ATAGGTTAACGTATTTTATCCTAATTGTACTATCGT 7322 30 100.0 35 .............................. CTTGCTATATCTGTAGCACCATTATTGAAAATTCT 7387 30 100.0 36 .............................. AACTTTATGCGTGGAAATGAGGGTATTGAGGAAATA 7453 30 100.0 36 .............................. GTTTGTTTTTTACAATTTTAAGTCCACCCCGATTAC 7519 30 100.0 36 .............................. GTCATCAAAATCAGTTGCAGTAAGTACACCGCTTGA 7585 30 100.0 36 .............................. TTTTATCACCTTATTGTAGTCACCAATACTAAATAA 7651 30 100.0 37 .............................. TCATCATCTTCAAAATGATATGTGCATAACGTATCAA 7718 30 100.0 37 .............................. CATAAACAGAAACAATAAAAAGGATTGAACAAACATG 7785 30 100.0 36 .............................. ATTTGAGACAATACGATAGTACAATTAGGATAAAAT 7851 30 100.0 37 .............................. ATGTACTTGAATGTACATAGATGTAACTATTTGTGCC 7918 30 100.0 35 .............................. GGCAGTACATCAATACAGGAATTTGAGTTTGACGG 7983 30 100.0 38 .............................. CGATGCTTATGTGAAATCTTACGCTACAAGTCAGCCAA 8051 30 100.0 37 .............................. GGAGATAGAAGAAAAGGAGGAGACAAAATGAGTATTG 8118 30 100.0 37 .............................. ATACCTAGCAGTGCAAAAATACCATACAACGCATACT 8185 30 100.0 35 .............................. ATTTTCAAAAAACTGGAGAAATTACAGCAGTCATA 8250 30 100.0 38 .............................. ACTGAGCATACGTTTAATACAACATTGAATTTTGAGAT 8318 30 100.0 36 .............................. TATTTTTAAGGGATGTAGCACTAAATGACTTAAATC 8384 30 100.0 38 .............................. ATAGATACAAGTGCTGATTCAGTTATATCTATCATCAT 8452 30 100.0 36 .............................. TAGGATTGCAGTATTTTGAATGCTTCTTGGTCTATT 8518 30 100.0 35 .............................. AACTACATTAACAACTGAGGAAGTCGAAGATATTG 8583 30 100.0 35 .............................. TAGTAAGTATCTAAAATCATATCATGGATAGACCG 8648 30 100.0 37 .............................. CTGCGTCAGAGGGGCGATCTGTGAACGCTGTTTGTTT 8715 30 100.0 42 .............................. TGAGTCTAAAAGACTCATGATACACATGCACAGCACATGCAC 8787 30 100.0 37 .............................. TAAAATGATTAATAAAACAGATTAATCTAACTTAACT 8854 30 100.0 36 .............................. GACTTCTACCACACTCATTGGAGCATTGTAACCAAA 8920 30 100.0 37 .............................. TTGCCCTCCCGTTAGTAGCAGGTCTCGCAGCCGTTGG 8987 30 100.0 37 .............................. ATGATTATTCATTTGCTCTAATTCGGTAGGCGTGGAT 9054 30 100.0 36 .............................. TACTCTTTTATTCTTTAAAGGTTTATTTAATTGTGA 9120 30 100.0 36 .............................. CATAACATTGATTATTCATAGACGGATATAGTGCCA 9186 30 100.0 45 .............................. TTTTAAGTCTCTAATTAGTAATAGGTTGTCTAAGTTTAAAAGGCT 9261 30 100.0 35 .............................. TCAGCAACAAACACATTTGTAACTGAAAATGATGT 9326 30 100.0 51 .............................. ATTTCAAACTTCAAAGTGCAACGGGAAAACAACCCGTGACTGGAGACGTTG 9407 30 100.0 37 .............................. ACATTCTGGATCGTGAATGTGTCTCCGCCGATATTTG 9474 30 100.0 35 .............................. TATGTCTGTATTCCTTGTAGATGATCGAGATTCAA 9539 30 100.0 36 .............................. ATAACATGAACTATAGAAGTATAGTTCAAGGTTGGA 9605 30 100.0 37 .............................. TCTCCTCTATCAATTCCATACTTTTCCATAATTTTTT 9672 30 100.0 36 .............................. ATCTTGGCATGCTTGATTTCATGAGGGTCATATTTC 9738 30 100.0 36 .............................. ACTTATAAAACCGTGCAAGTACACGATTTATATACT 9804 30 100.0 36 .............................. TCTGCATAGGAGCCTTGCGCGCCCATTCTTGATTTT 9870 30 100.0 38 .............................. TTGATGCCATCTTGTCCTGTACCCGTTCCTTTGTCTTC 9938 30 100.0 35 .............................. TTCAGTGTTGCAGCCGAACTTGTTACGGTACCCAG 10003 30 100.0 37 .............................. CTCTTTGGAAATGCTTTTGGTCTGTTCTCTACAGCAG 10070 30 100.0 42 .............................. GATGATGTGATTGAAAATACATGGAATGAAAATGAGTATGAT 10142 30 100.0 34 .............................. ACACAATATAAAATATGGAATCAGTAGACATCAT 10206 30 100.0 39 .............................. TGTTACAACAAAAGGTAATGGTAACACGAGTAACCAAAA 10275 30 100.0 39 .............................. AAACGAGCGGGTGAACATGAAGAACGTAATCATCTTGAC 10344 30 100.0 38 .............................. AAACAGCCATAGATAATAGGAACATTCTTTCGGTCCCT 10412 30 100.0 35 .............................. TTCATGTACTGATAACGAACTATTTATGACTGGAT 10477 30 100.0 40 .............................. ATCTGCTTGTTGTTGTACGGATCTTTGTGTATCGATCCGT 10547 30 100.0 45 .............................. AAATGCGTAAACGGATCAAAATATATATCACTCGGTGACGATTGC 10622 30 100.0 36 .............................. GCGCTTCTTTGGCGGTGAATTCATCATCATACTTTT 10688 30 100.0 36 .............................. TTCGTTCCTATGTTTGTATCTGCTGAATCTGCACCT 10754 30 100.0 38 .............................. TTTCTTATATGTTTTTTATATTCTTTTATACTTTCATT 10822 30 100.0 36 .............................. TCAATAATTTGAATTTGTTGTTTTTGTGGTGGCTCA 10888 30 100.0 36 .............................. GCAATTATCATGTTTGTATGTTTCGTCTTGAACGGT 10954 30 100.0 35 .............................. TTATATGTATAAAAACATCTATAATAGAGTATATA 11019 30 100.0 38 .............................. GATTGAGTGTAATTTCAGTATTTCCGGCAACCTGACTG 11087 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================================== ================== 117 30 100.0 37 GTTATAATCAGACCTTAGAGGGATTGAAAT # Left flank : GCCACTAGTGATGTGGTGGTAATATGTATGTGATTGCTGTATATGATGTGGGGATTGATCGTCTGAATAAGGTTCGTATATTCCTTAAACAGTACCTCAATTGGGTTCAAAACAGTGTCTTTGAAGGAGAGCTTACAAAAGCTGAATACATAAAGGTAAGGTCAGAAGTAAAAGAACTCATTGATGAAGATGTTGATTGCGTCTTTTTTTATCATGTCAGGGATAAGAAATATCTTGGTTTTGATGAAATGGGTACCAGAAAAACAAATATTGATACGATAATCTGATGTTTCTATGACATTTTCGTGGATGTTTATAAAGCTACTTCCAAATTAAAGATCCACGAAAATGAGCAATTTGGATTTTGAATTTTTGTTACATTTGCAGACTATTCATTGAATTGCTTTTTTTGAATAAACGTAACTGGAGACGCAATTACACACTTTTTTGTTGAATTATATTCGTCTCAATAAGCCTAAAATAAGATGAAATCCATCTTG # Right flank : TTATTATTTAGACGCTATTTTAATAAACTAATCAATACAAAGTAAAATTAAACTTTCTGATTTAATATCGGAACTGTATATACAGTTTTGAAGTAGATTTATAACGATAAAAACATTTATTAATATGGCCAGAACTCTAAATATGAGGTCATTAGAAAATGGACGGGTTTGTGGGAGATCCCATCATAACTTCCGGCTTACTTGCGATTAAATTGAACACAGGTTTCAGTATTAGCGAATGCCCTGAAGATAAATTGAAGCAGGCAAGTGAACAACTTGTAGAATTATATCTAACTCCTGCTTGGTCAAAGGAGTTACAATCTATTTTTCCCAATAGTACTTACATTCAAAGTGCAAAAAATTATGATAAGAAAGGCAAATCGATAGAATTCTTGTATGAGCTTATAGAGGGCTTAAATTCTGAAAACAATAATGATGAGTATTGCGTATTTTGCGGCAGTCCTGCACATCAAAGAAATGATGGCAAGCCATTTGTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATCAGACCTTAGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //