Array 1 498-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKD01000109.1 Helicobacter cinaedi strain CCUG19503 entry109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 497 36 100.0 30 .................................... GAAGAATCTCGTAGGCAAGAAGTGATTTAG 431 36 100.0 30 .................................... TCTACATAATATTGCTTGTAAAATGCTCTT 365 36 100.0 30 .................................... AAGCAAAGATTGGAAGACGGAATGGACGCT 299 36 100.0 30 .................................... GTCATCTTTTAAAGTTTCTAAATCAAGTGT 233 36 100.0 30 .................................... TTCTTTAGCATTTCATTGGCAAAGCCTTTA 167 36 100.0 30 .................................... TTGCGGTTAAACTTGTTAAATTGTGCTAGA 101 36 100.0 30 .................................... TGTGGCAGTTTTTTGCTTTTTCATCTCTAT 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : | # Right flank : A # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1-167 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKD01000107.1 Helicobacter cinaedi strain CCUG19503 entry107, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 1 35 100.0 31 ................................... CTAAATCACTTCTTGCCTACGAGATTCTTCG 67 35 100.0 31 ................................... CAAACACGCTAGGTATCTAAATAGTGCTAAG 133 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 3 35 100.0 32 TTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Left flank : | # Right flank : TAGGCTCTCTGTTGGTGCCTATAGATAGGGATTTCAAAGGATTTTAAGCTGGAAATTACCTGAAATCCTTTATAATTCGCGACATAGAAGTTTAAGAAGGGACTAAAATAAGGGAGTAAGGGGTCTTCCGCAGGGTAAATCATATCCCTATCAAAACCCTAGAATTCAAATAGGCTTGGTTGCCTATTTTTGATTTTTTGTTTTGGTTGTGTAGTAGTTGTATTCAATTCTTCTTGTTTTTGATACTCCATACCATAGCGGTAATCACCCGCATTTTCGTCAAAGTCAAATAGCACAAGATTTTTATCTTCATTAACATTCTCATTAAATGATGGGTTTCCTAATAATATTTCTATATTGTCGAATTGTCTTTCTGTGATGATAAGTGCGCGGACATTACCATAAGGTGGAAGCACCTTTTTTACAACATTTAGAGAGCTTTTTGCCGAGCTTAACCCTTTGCATATTTTCATATACACGCTAAATTGCATCATAAAAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 301-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKD01000110.1 Helicobacter cinaedi strain CCUG19503 entry110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 300 36 100.0 30 .................................... CGAGTATAAAAACGGGTATAGACTTGTCAT 234 36 100.0 30 .................................... AAGATCCTCATCTCTATAGCGAGTATTCCA 168 36 100.0 31 .................................... AGTATTTCGCTACACCCTTTATATTATACCA 101 36 100.0 30 .................................... TGTGGCAGTTTTTTGCTTTTTCATCTCTAT 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 99.4 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : | # Right flank : A # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 363-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKD01000053.1 Helicobacter cinaedi strain CCUG19503 entry53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 362 35 100.0 31 ................................... ATCCAGCTATATCTTCAGCACTACAAGATGG 296 35 100.0 31 ................................... AGAGAAGAAACAGCAAGCTAATTAATCAAAG 230 35 100.0 31 ................................... TGATTTTGGCAAGTAATGATTATTTGGTAGG 164 35 100.0 31 ................................... TTGTTCTTTTAAGTTCCTGTGGAATATTTGG 98 35 100.0 31 ................................... TAACCTTTGCTTCTGTCCTTGCTATACTTGG 32 32 91.4 0 ................................--- | ========== ====== ====== ====== =================================== =============================== ================== 6 35 98.6 31 TTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 14878-15027 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKD01000082.1 Helicobacter cinaedi strain CCUG19503 entry82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================== ============================================== ================== 14878 20 100.0 46 .................... TGAATCTAGCTTATGGGCTGTGAGCGTGTAGTTGCAATCCCCTCAC 14944 20 100.0 46 .................... CAAGTATAGCAAGGACAGAAGCAAAGGTTAGTTGCAATCCCCTCAC 15010 18 90.0 0 ..................-- | ========== ====== ====== ====== ==================== ============================================== ================== 3 20 96.7 46 AAATCGGGTCCCACTAAAAC # Left flank : ACATAAGTGATGAGCTAGATTTAGAATCTGTGGTATTATGCTCTTGTGTGGGCGTGTTTGGTGGAAGTTTATTAAGATTATTAAGGATAGTAAAATTATCCAAAGGATTGCTTCTGGCCTTATTGCCAAGGAGCATTTCCGCCATCAGCATAGACGCACCAATGAGAATGGCTAAGATAAGATAAAAGATAACAAACGCTCCACCGCCATTTTCCCCCGCCATATAGGGAAACCGCCAAATATGTCCCAAGCCTATGGAGCTACCCAAAGTCGCCAAAACAAAGCCAATCTTACTGAAGTTATTCATCTATTTCCTTTTAAATATGTCATTTTTTAACACAGCATTCTAGCTAAATTTAAGAATCTTACAAGACTTTGTAGAAAAATAACAGGATTTTTGTTTGTGTGGATTATATACTTTGGCAAAGCCCTAGTAATGACATAAGATAGACAAACTTTGATACAACAAGTAAAAGCATTAGAGTGATACAAATCCCCTT # Right flank : | # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:-0.75, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATCGGGTCCCACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //