Array 1 42443-41452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCNC010000002.1 Escherichia coli strain PE01_647 .PE01_647.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42442 28 100.0 33 ............................ GGTTAGGGGTATCGGCGCGCTTGACCTCCTGAG 42381 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 42321 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 42261 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 42200 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 42140 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 42080 28 100.0 32 ............................ TTGTTGCGTGTTGTCGCATCCAGGATGCGACA 42020 28 100.0 32 ............................ TGTCAGGGCAGGCCCCGACACCCAGAACGTGC 41960 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 41900 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 41840 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 41780 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 41719 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 41659 28 96.4 32 .G.......................... AGTTCGCGGCAGACATACACGCCGGGAGTTTT 41599 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 41539 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 41479 27 92.9 0 .......................C-... | T [41460] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52482-51502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCNC010000002.1 Escherichia coli strain PE01_647 .PE01_647.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52481 28 100.0 32 ............................ TGGTATACCTGGAAGTTCGTCCTGTTAAACAG 52421 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 52361 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 52301 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 52241 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 52180 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 52120 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 52060 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 51999 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 51939 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 51879 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 51819 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 51759 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 51699 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 51639 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 51579 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [51532] 51531 28 78.6 0 CC..................T...C.CT | C,A [51505,51508] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.7 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //