Array 1 2260-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPM01000128.1 Methanosarcina mazei strain 3.H.A.1A.1 scaffold292_1_size2295-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2259 37 100.0 34 ..................................... TTAACGACCCAAAAAACAAAGCAGGACCAAAAAG 2188 37 100.0 35 ..................................... ACCACCTTAAACAAAAACTATATATAATATGTGTT 2116 37 100.0 34 ..................................... CATTCACCGTAAAAAGATTGCCTGTGCCGGTATC 2045 37 100.0 38 ..................................... AGTATTCATGACGGGCTGCTGAAATCTGATTACACTCT 1970 37 100.0 37 ..................................... ATACTCAAAAATCCAAACATAAAAAGCTCAAGAAAAC 1896 37 100.0 35 ..................................... CAGTTTTGAGTTCAGCTTTTGCAGAATCGAGTTCA 1824 37 100.0 35 ..................................... CTGTCATATTCGATGTCGTGGATAGTCGCTTTCAC 1752 37 100.0 34 ..................................... ACAAATTACCATCTGCTACAATAACTAAACCCAA 1681 37 100.0 35 ..................................... TTGTAGCCTCTAAAGCAGTACCGAGAGGTGCGAAT 1609 37 100.0 34 ..................................... ATATTTGGAATTATAGAAGCAATAACCCTAATAG 1538 37 100.0 41 ..................................... AAAAACAAATGATTAATAAGCTTAATGAGATAGACAGATTA 1460 37 100.0 36 ..................................... TTTAGTGCTATTCTGCCTTCCGTTTGTGTTCATTTG 1387 37 100.0 37 ..................................... CCTTATAGTCTGCAATATCTCTAAATGTTAAAGTCTT 1313 37 100.0 35 ..................................... TCAAACAACATTTCAAAAAAAGAATTTCTCACTAT 1241 37 100.0 34 ..................................... TCCATCCTGTTCTCGAACTGTTCCTCATAGAACG 1170 37 100.0 36 ..................................... TAATATGGCAACATTAACACTAACACCAGGCACTTT 1097 37 100.0 38 ..................................... GGATCTCGGTTGTTTGATTCCCATCTATCACGTAATAA 1022 37 100.0 35 ..................................... TAAAAAGTATTATTTCTTATGATAACGCCTTTTGC 950 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 878 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 807 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 733 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 659 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 586 37 100.0 34 ..................................... CTCTCGAAGAACCTTTTTTTTGTTTTCCCATCGG 515 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 440 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 368 37 100.0 37 ..................................... TACATGGTATTAATATGGAACCAAAAATCCCCCCACT 294 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 222 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 151 37 100.0 37 ..................................... TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 77 36 75.7 0 .....T.....T..........G.GCCT-.......A | C [45] ========== ====== ====== ====== ===================================== ========================================= ================== 31 37 99.2 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : CTCTCAAACAGACCTATACACCTTCAACCGATCCA # Right flank : AGTGTTGTGACCTGTGTAGATGCTGTCTCTTATACACATCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 3539-8777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPM01000068.1 Methanosarcina mazei strain 3.H.A.1A.1 scaffold225_1_size8925-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3539 37 100.0 37 ..................................... AACAGTTGAATGTCACTCGATGAGGAAAACGCTTTCT 3613 37 100.0 35 ..................................... AAAATAATGTAATTACATACGTAAAAAGACAGAAC 3685 37 100.0 35 ..................................... CCCTGTATCCGTCTTTTTTTGAATCCGATTTTATT 3757 37 100.0 35 ..................................... ACAATACTTTCGCTAATACTGGCTGGCATGGGATT 3829 37 100.0 36 ..................................... ATAATCCAGGAGCGAGAGGACCGGAAAGAAGGCGAA 3902 37 100.0 35 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAG 3974 37 100.0 38 ..................................... CGGACATTGACAGAATCATATCAAAGGGCAATTTTGGG 4049 37 100.0 33 ..................................... AAATGATGTCTTGATACATATCTTAGTTTTGTT 4119 37 100.0 34 ..................................... AGGGTTTCATGCTGTTTTCCGTTCATTCATACAC 4190 37 100.0 35 ..................................... TACGGACTGGAATTAAACACGGCTTCAAAGGCGAT 4262 37 100.0 36 ..................................... ATAGCGATTGTATGAACTCCGTGAACATCCTTCGGT 4335 37 100.0 37 ..................................... GATATTAACCACCCAGGCATGGGCGAGTCTGTTTTAT 4409 37 97.3 35 .....C............................... ATCTCCCTCTCTTTTTCATCTAGAGAATTCCGCAA 4481 37 100.0 34 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATT 4552 37 100.0 35 ..................................... CGGGTTCCACATGAACATGGATAGTACATGTTATA 4624 37 100.0 35 ..................................... TCTAATGTCAACTCTATGTATAAGTATGTACTATT 4696 37 100.0 35 ..................................... CATAGTAGCAGACGCATCCCCCGGCTTTGTTTCGG 4768 37 100.0 35 ..................................... ATCGCGTTCAGGTGCGAAGTTCCCATATCCTCCTT 4840 37 100.0 34 ..................................... ATGTATAGAGTTCATATTTTTGTACCATTATTTT 4911 37 100.0 35 ..................................... TGGATTCCTCCGAACGAATCAGTAGCTACAGGCAG 4983 37 100.0 36 ..................................... AAATTTTGATTCCTGGACGTTCTGAGCAGAAAATAG 5056 37 100.0 35 ..................................... CAGCTACTCCTGTAAAATCGTACACCGTTGTAGAA 5128 37 100.0 35 ..................................... TTGTTTACATCTATCATTTTCAATGAAAACGCAAG 5200 37 100.0 36 ..................................... TTATACAGTGCTTCAATAGGTCCGGTCATTTTCTTA 5273 37 100.0 37 ..................................... TAAAAAGAGTAAATGCGTTTTTTGCAGCTAGAGAACT 5347 37 100.0 35 ..................................... ACATACTCAAGTGCTTCAGGTGCAACGACAATAAG 5419 37 100.0 34 ..................................... AATATAATCAACATGGATACACATACATGAAAAA 5490 37 100.0 37 ..................................... CAATATCTTAAGGCTAAGTCCTTCAGAGCTGCACCTT 5564 37 100.0 35 ..................................... AGGCTATGCGTTTCTTAACTCGATTGTTCTATAGA 5636 37 100.0 35 ..................................... TGAACCGAGGGAAGATGATTGAATATATCTTACTT 5708 37 100.0 37 ..................................... ACATTCTTATAATTACCTTCGTTCTCCCAAAAAACAT 5782 37 100.0 35 ..................................... TTTTTATATCAAGTTCGTTCATTGTGTTTTCACCT 5854 37 100.0 34 ..................................... TTGATTCCGTCATTCTGATCTGTAGATGACCAAA 5925 37 100.0 37 ..................................... TATCGTATCCTAATTTTCATTAGGATATTCATGCTTC 5999 37 100.0 36 ..................................... CGTCAATTATTCCCTCCCAATCGACTACAGCAAAAA 6072 37 100.0 32 ..................................... TGGCATATGATTGATTAGATGTAATGAAGTGT 6141 37 100.0 35 ..................................... TCTGCTGTTTGCCCTCAGTGAGTTTCAGGAGATCT 6213 37 100.0 36 ..................................... ATCTTACGGGTTCTGTCATACAGGAACCTCCAATAT 6286 37 100.0 35 ..................................... ATAAAAGTAATCTCACTATATCAGGCACAAGAGGC 6358 37 100.0 33 ..................................... CTTCGTCGCCTGCTGAAAATGTATTTTCGTCGA 6428 37 100.0 36 ..................................... CCTCTCCTTATACTCCGGCAGCTTCTCCTGATATGG 6501 37 100.0 37 ..................................... CAAACCCGGGCAAGCCGGTTACAGGCATTTCAAGAAT 6575 37 100.0 37 ..................................... TCCCGAGCTTGAAAAAGCTTATCTGGCCTAATAAGGT 6649 37 100.0 34 ..................................... ATGCACAGCCAATCGATTCGAGGTCTGTAATACT 6720 37 100.0 35 ..................................... TAAAATGAATGCTGCTGCAGATATGAGACAAAATG 6792 37 100.0 35 ..................................... CTGCCCTATCATCCTGCACAGCATTTGATACAGCA 6864 37 100.0 37 ..................................... AAATCTAGCTTATGCGGTCTTTCTCTCCATTCTTCAA 6938 37 100.0 36 ..................................... TAAAATGAATGCTGCTGCAGATATGAGACAAAATGA 7011 37 100.0 35 ..................................... TGATCCAACCAATCACGCCCAACCGTTTTGTTGGT 7083 37 100.0 34 ..................................... CGATTACTCCAGGGTCACGGTGGAACCCGTCAGA 7154 37 100.0 34 ..................................... TCGTCTGGTAATACGGCATCCTGAGTGAAATAGA 7225 37 100.0 36 ..................................... CAATTATCTTCTTTCCTATCCTCATTACGTCAACTT 7298 37 100.0 34 ..................................... TTGATGGAATCCTGTAGTTTTGGACTCCGTGCGG 7369 37 100.0 34 ..................................... AGGCCAGGGATGAAAAGGGAATTCTCGCCTACCG 7440 37 100.0 35 ..................................... TTTTCGTCTATGTTGCCATGTGCATTACTAGTTTC 7512 37 97.3 35 .....C............................... CAGGTAACTCCTGTTTCTGAAGCATCCGGACCGAT 7584 37 97.3 36 .....C............................... ATCTCTTTGCGTTGTCTTCTAATTGTATCAGTATCT 7657 37 97.3 35 .....C............................... AATATAACTTGTGCGTATTATAGTATAGAGCAAAG 7729 37 97.3 36 .....C............................... AACCCTGCTTATCCTGATGACGGCATTATATTCGGA 7802 37 97.3 36 .....C............................... CTTGTTGCAGTTTGTTCTGTGACTTCTCTGCCATTC 7875 37 97.3 38 .....C............................... TATCGCATGTCATATGTTAAATTCCAGATCAGAACACT 7950 37 97.3 34 .....C............................... TAGTCGTCCAGTTCCGCCCACAGTTCAAACATTT 8021 37 97.3 33 .....C............................... AAAAGTCAGTCCCGGCCAGCCTATGCGCTAAGA 8091 37 97.3 33 .....C............................... TAATAATCTGTTTGACAGTTGCAATGGTTACGG 8161 37 97.3 37 .....C............................... TTCAGGTGTAAAACATGGCATATAAACAGCCTCAGGG 8235 37 97.3 36 .....C............................... AGCTGGGCATTTTGAATCGAATAAACTATATTGAAC 8308 37 97.3 35 .....C............................... TAAAATTTGACTGTTGAATTAATTTCGATGTTGTT 8380 37 97.3 38 .....C............................... CCGAACGTATTGTATTTGGTGGATTATACGACGGTAAT 8455 37 97.3 35 .....C............................... TTATTTAGATCGAAATGTCCTAAAATACCAGCTGC 8527 37 97.3 34 .....C............................... AAATAGCATTAACCTGTTTTGCTTCATCTTCGGT 8598 37 97.3 35 .....C............................... TACTCTTGATGCTTCAGCAAAAACAATATTACTCA 8670 37 97.3 34 .....C............................... AAATGCGACGGACACAGCCATTCAGATGATGTAC 8741 37 97.3 0 .....C............................... | ========== ====== ====== ====== ===================================== ====================================== ================== 73 37 99.3 35 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAAGCTAACCTGATTGACCTTGAGAGTTCGGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGAACCTTCTGTATAATTTATAATGGCAGGGTTATCAGCCATCACCCAATCAGTAATACAAGGTTTGAAAACATTATGAAAAAAATAATTCAATAGTCCATACCAGATTTCAAAACCCTTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : GATATTAACCACCCAGGCATGGGCGAGTCTGTTTTATATTCGCGAGCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 63-461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPM01000169.1 Methanosarcina mazei strain 3.H.A.1A.1 scaffold44_1_size23433-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 63 37 100.0 36 ..................................... TTTCCTAATTTGAATTTTAGAAATGGATTTGTATTT 136 37 100.0 35 ..................................... CACTATACAGAAACTTGCAGAAATTACACGATACA 208 37 100.0 35 ..................................... GCAAATTGATAGCAACAGCTAAAATCTATAAAGAT 280 37 100.0 37 ..................................... GCCAATAGTTCTCTTAGGTGATAGCCCTTACATACGT 354 37 100.0 34 ..................................... TATAAATCGCATCACATCAAGATCACTGCAAGGA 425 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 100.0 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GATCCACTAAAACAAGGATTGAAACGATATTAACCACCCAGGCATGGGCGAGTCTGTTTTATA # Right flank : CCTCATCTTTGAGTAAAATTTTTATTTAATTATTATTTTTTAGCTATTTTTATATTTATTTGATTTTAAACTATTGTAGTCAGCATTAAAATAAATTTTCATAATATTGACTAAATTTAGAAACTTTTATATGTAATCGAATATTTTTTAAGAGATAAATTATTTTAAAGGAGCATTTCCGATAATGAATGATGATGAACTTCAACTCATATTCTTGCTCCATGATCTTGGCATATTTTTTAAGAGAACAGGCTTGCCCCCCTTAGAAAAATTCAGTAAATTGACGGAAAATGAGATAGGTAATGGAGGGTCACACTCAATATGGAGTGCTTCATTTGCTGAAGAGCTTGGTCTGAGCCAGGATATCCAGAATATAATACTATACCACCATAATTACGATTCTTTGGAAGGAGAGAATGCAAGAATCGCAAGTGTACTTGGTCAAGCTGCTGAATTCTTCTCAGGAGAAGAAGAGTTGGGGCCGGTAAACCTTCTATCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 2 8153-8485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPM01000169.1 Methanosarcina mazei strain 3.H.A.1A.1 scaffold44_1_size23433-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8153 37 75.7 39 .CT.CA..ACG.......GC................. TTTGATTTAGGGGCAAGGATCCATTGTCTGTTCGCTCGT 8229 37 100.0 35 ..................................... CATATTGAAAAAATGAGAGAGGATCGGATTTTATT 8301 37 70.3 37 A.TCGTG..C.AGA....T.................. AGTGAAATGGGGTTTTTCAGTTTGAAGGTTTTTCCTT 8375 37 91.9 37 .........C..................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC 8449 37 59.5 0 A.TCGAT.AC.AGA....T........A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 79.5 37 GTCGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Left flank : TATTACTTTATCATTGTCAAAATCAGGAAAAATTCTACAAGGTTATTGATCTTAAAGATCCTCGTGAAGTAAGTTATGAATCTGAGACTTATGTAATTGCTCCTAAAACTATTCCAGAAGATCTTAACTTGGATGGCGGGAAAAAGTTAATCCTGCATATTGTCATATCTGCTCGCCATGTTGAAAACTTTCGGTTACATGATGATCATTTTAATGCAACCAATGTTGCTATAGTTTATAATGTAGACCTAGAGCCTAAAGATGACTGGTTACCTTACGTTCAGGAAATAGTTGAAATAGCAAAACCATTGATCCATCGTTATGAAGATGTTGATGTTTGTCTAATTTGCCCTTCAGTCGTAGCTTTTGCACTTGGAATGGCTTTCTCAAGAAAAGGATCTTTAAAAGTCTGTCATTATTTTAGTGATGGAAAATATAGGCCTGTATTTCAACTCTCCGAGATAGAAGGTCACCCCCCTTTCAGTTAACTGTGAGCTAGA # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAATTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATATTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:3, 4:-0.03, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2013-84 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPM01000300.1 Methanosarcina mazei strain 3.H.A.1A.1 scaffold70_1_size19157-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2012 37 100.0 37 ..................................... TTAACTGCTTTTGAATCAATCGCGGAATCGCTTAAGA 1938 37 100.0 34 ..................................... AAAAATTTAGTTTTGACAGCAAGCCGGGATTCTG 1867 37 100.0 35 ..................................... ACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAA 1795 37 100.0 35 ..................................... AAAAGAGTCTGACACCATAGATTTCCATAAAACGG 1723 37 100.0 36 ..................................... AAAGTTAGGAAGGCAGGGTATCAAGAACTGGTCTAA 1650 37 100.0 35 ..................................... CTCACTGTTCCCACGCTCCTGTTTTGGCGTTATAT 1578 37 100.0 34 ..................................... CTACATCTGTGCCAGCCTCCCCGATTGTGATTGT 1507 37 100.0 38 ..................................... ACTGTACTGTCCTCCCTCCCTTGCCTCTTTTTGTAGGA 1432 37 100.0 36 ..................................... GTAAGTATCATGCTTTCAGGGAACAATTCTACCGCT 1359 37 100.0 35 ..................................... TAAATCAAAAAATCAGAAAACGAGGACAGTATGAA 1287 37 100.0 36 ..................................... TTTGTCATTTTTTGTGACTTCCTTAAACTCAAACTT 1214 37 100.0 37 ..................................... ACAAGGGACTCCCATTCGTCTGAACCCCCATACGTAT 1140 37 100.0 35 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAA 1068 37 100.0 35 ..................................... GAAGACTCCGAGCAAGTGCCCCAGATGAAGGACGT 996 37 100.0 35 ..................................... GGATACCCGTATCTGTTTCATATCCAGGCTCTCCG 924 37 100.0 35 ..................................... TGCTTTGGTCCCGTACATAGCTATCTTGGCTATTG 852 37 100.0 35 ..................................... CTTCTAGTATTTTCACCTTGTTTCTCAGCGCATTT 780 37 100.0 34 ..................................... AAAAACGGGCAGAATAATAATACACTAGCGTATC 709 37 100.0 37 ..................................... TGCGAGTGGGAACCAGGTGCGGAGAAGTCACCGGATA 635 37 100.0 36 ..................................... TAAAAAATTAAGAACGTTGTCATTTTTGCGTTGTCT 562 37 100.0 37 ..................................... GAGGCTGGAGAGCTCGGATATGTCAGCGATACCAATA 488 37 100.0 36 ..................................... CTATCATGCTGACACACCCAATGCCCCACAAACCGC 415 37 100.0 37 ..................................... TTTTTGATTTTTCTTCCGGCATGAAATCCTTGATCTC 341 37 100.0 37 ..................................... CTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGAT 267 37 100.0 37 ..................................... AGAGTCTCCCAATAAGGTCGTCTTTGTGCCAACGAGT 193 37 100.0 36 ..................................... AAAAGTCAGTCACGGCCAGCCTATGCGCTAAGACTT 120 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : ATTAAAACAAGGATTGAAACAACCATTCGATATCCCTATGATACGTCTCTGAATAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTGTAATTCTGTCGCGGCGGGGCTGTTGAGTGCTGAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACAGGGTTTCAGAGGTCATTTTCACACCTCTACAAAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTAATGAATGCTCGTAAGGTTCTCAGGAGCAACATAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTAATAACACAATTCGGAGCAGTGGTATAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATNNNNNNNNNNNNNNNNNNNNNACAGAGTAGATCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCATTAAAACAAGGATTGAAACTAATAACACAATTCGGAGCAGTGGTATAGGCGGCA # Right flank : CTTAGGGTATTACAGAGCGTCTATTATATTCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 4273-2206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPM01000300.1 Methanosarcina mazei strain 3.H.A.1A.1 scaffold70_1_size19157-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4272 37 100.0 35 ..................................... TCTCGATTGAAAGAAGGAAGAAAACTCAGAAGAAA 4200 37 100.0 34 ..................................... TGGTGAGCATAGGGGATTTCGTGAACAATCCTTG 4129 37 100.0 35 ..................................... AAAATACTAGAAGTAAAACGGGACTAAGATAACAA 4057 37 100.0 35 ..................................... TTCCCTGCTCGCGAGTGTTAAAAGAGAGTGGCTTA 3985 37 100.0 36 ..................................... CACAGTTGCAAAGTAATGCAACTTGTGCGGGAATTG 3912 37 100.0 37 ..................................... ATTGACAGAGCAACCGATTCAATCAATGGAGAGCCGT 3838 37 100.0 35 ..................................... ATCGGCTCTGGATACTCAGACCAGCAGAAAAACTG 3766 37 100.0 34 ..................................... AGAAGAATGAAATCCACAAGTTCGACCCTAAAAA 3695 37 100.0 36 ..................................... ACAGCAATGCACGCCGCAAAACAGAAATTAATTTAA 3622 37 100.0 35 ..................................... TTCCCTTGTATAGCTCACGCGGGAACCGTAGAAAC 3550 37 100.0 37 ..................................... TAAACACCGTAAATAATTTGCTCCGGTGCGTATACTT 3476 37 100.0 36 ..................................... TTGATCCTTGCCCCTGCTGTGCTCCCTTTCATGCTT 3403 37 100.0 36 ..................................... TTATTCCCTTCTTATTTAGAATGTTAAAGAGTCATG 3330 37 100.0 37 ..................................... ATATATAGACTCGATTTTGTCGGGTATTCGTTTGCAA 3256 37 100.0 35 ..................................... AGTCGCATTTAGTAACTTCTCGGTTTTTTTCACAT 3184 37 100.0 39 ..................................... TTACATTATACTCTATTTGTGTTATTATATCTATATTAT 3108 37 100.0 35 ..................................... TAAACACTCTGCAACAACTGAGTATGCTAATCCAA 3036 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 2964 37 100.0 36 ..................................... CGGCGACTCCGGTAAATTCATACAAAGTTGTAGAAG 2891 37 100.0 36 ..................................... CTATTTTTAGAAGGGATCTATGATATCAATACCCGG 2818 37 100.0 37 ..................................... AGTTCGTGTCAGGGAATAGTTTGTGATAATCTGATGT 2744 37 100.0 34 ..................................... TGATAACGCCTTTTGCTGCATCCCTTGAAGTGTT 2673 37 100.0 35 ..................................... TTTCAATTACCACATTAGCTTCTAACTGTTCAATT 2601 37 100.0 35 ..................................... ATGCCCAGCCCTCGACACCCGGACATTTATCTTGA 2529 37 100.0 35 ..................................... AACCATTCGATATCCCTATGATACGTCTCTGAATA 2457 37 100.0 35 ..................................... TGTAATTCTGTCGCGGCGGGGCTGTTGAGTGCTGA 2385 37 100.0 34 ..................................... AGGGTTTCAGAGGTCATTTTCACACCTCTACAAA 2314 37 100.0 35 ..................................... TAATGAATGCTCGTAAGGTTCTCAGGAGCAACATA 2242 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 29 37 100.0 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TAATAACACAATTCGGAGCAGTGGTATAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATNNNNNNNNNNNNNNNNNNNNNACAGAGTAGATCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCATTAAAACAAGGATTGAAACTAATAACACAATTCGGAGCAGTGGTATAGGCGGCAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACTTAACTGCTTTTGAATCAATCGCGGAATCGCTTAAGAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACAAAAATTTAGTTTTGACAGCAAGCCGGGATTCTGATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAAATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAACAAAAGAGTCTGACACCATAGATTTCCATAAAACGGATTCGCGAGCAAGATCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //