Array 1 10780-12146 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKJJ01000033.1 Acetobacter tropicalis strain CS_006_W139 NODE_42_length_32611_cov_2.000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 10780 32 100.0 34 ................................ TAACATTACTCAACATTTGCAAAATGGTTAAACG 10846 32 100.0 35 ................................ CATTGCAATGCGGCGTGCATCAAATTCCTCATAGG 10913 32 100.0 35 ................................ GCTCATTGCCGAGGCAAATAGCCTCATGCCGCGTG 10980 32 100.0 35 ................................ CCTGCCACAATCAGACTGAGGTGCCTGAGTATGCG 11047 32 100.0 34 ................................ ACTTGTGTTCGGATACACAATTGATAGGGCCAAG 11113 32 100.0 36 ................................ ATCTGTTTACTTGCCCACAGAGTTGAGGTCTGCACG 11181 32 100.0 35 ................................ TTGAAAACGTGCCGACATATGCTGAAAGATCACCA 11248 32 100.0 34 ................................ ATTGCCCTAGATATTTCATCTGTCAAAGTATAAG 11314 32 100.0 35 ................................ TGCAAAAGAGTTTGGAAAAGAAGTGCGTTGGTGAG 11381 32 100.0 34 ................................ GGCGGCGGCTATTTGTGGCGTGGATAGTAACGGG 11447 32 100.0 34 ................................ TGCCAAAGTCTATCGTGATTTAGAATTTGGCGAG 11513 32 100.0 38 ................................ GAGGTTGTTACTGGCAGACGTGCAGACATTCGTGAGTG 11583 32 100.0 34 ................................ GAGCGCCATTATAATTATACCCGAAAATATTGAG 11649 32 100.0 35 ................................ GATTGATTACGTCAAAGAAAGCGGTTTTACGAATG 11716 32 100.0 35 ................................ TTGCCGAAGATATTAGCTGAAAGACCAGTATCTTG 11783 32 100.0 34 ................................ AGCACCTCACGTTGGGCGAGCTGTGCGGGCTAAG 11849 32 100.0 34 ................................ ATTTGTCAGATCACCAATGATGAGCTTGCCTCGT 11915 32 96.9 35 .............T.................. ACCGCCCTGCCTGGTTGGTTCCTAGTGGGTGCCGA 11982 32 100.0 34 ................................ CCGCTGCGCTGGCGTCTGCTGCACTGGCGGGACG 12048 32 100.0 35 ................................ GCGTCCTGACCCATGATGGTGAACCATGGTTTGTG 12115 32 93.8 0 ........T..........T............ | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 99.6 35 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : CAGCCTGTGGCAGGTTGGCAGGGGGCACAAGGTGCAGAGTATTGCCACCCGCGCCGAGCACCAGCAGGACCGCATAACACAGCAGGCAGATACGCCAGTTGACGAGAGGCTCCCGCATAATGTCAGTTGATGGCGGAAAGGATGAGGCGGATGCAGTATATAATCCGGGTGGTGTCGTCATTATAGTATGCTACCACCATGAAATCATGCTGTGTGCGACAAAATAGTGTGGCCCAGGTAGGAACGACCATGGCCACCTTATAGCTGACCGCTCCCTATTCCCTGCACGTAGCTATACTGCCCACCTATTTGCGGCAGACCAGCGCGAACCCCAATCACCCCTTAAAACCCCGCCAGATTCGCGCAAGATATAACCCTTTCAAACCAAAAGATTTTCTTCCAAACCGCCAGATGGAAGCGTAACAATTCCCCGCTTTCCACACAGGTTCGCGCACACCCGCACATTCCCCCAGTCCTTTTCTGCTGCTATGCTCCCACAG # Right flank : CTGCCTGTTCATAAGCTGTTTCGCTCCGCGTTGTGCGGATCGGTAGCCGGGGGAGGGCGAGTCTTATAGTCCCGTTGTGGTGGCGGGTGCTTTCTCTCCCCTGTGGCCGTCTTCTGTATTCAGGAAAACACGATTGTGCGGCGGCCGTTTAGCATAACACGTTGTTCCACATGCAGTTTTACCGCGCGGGCCAGAACTTGCGATTCAACGCCCCGGCCTGTGGCAATGTAGTCCTCGGGGGAGAGGTTGTGGGTGACGCGGGCGGTTTCCTGCTCAATGATAGGCCCTTCATCCAGATCAGCCGTTACGTAATGGGCCGTGGCGCCAATCAGCTTTACCCCGCGCGCGTAAGCCTGATGGTAAGGGCGTGCGCCCTTGAAGGAAGGCAGGAAGGAGTGGTGGATGTTGATGATCTGTCCGCTCAATTCAGCGGAAAGCCGGTCAGAGAGCACCTGCATGTATCGGGCCAGAACAATCAGGGAGGCCCCTGTTTCCTTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42940-43697 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKJJ01000049.1 Acetobacter tropicalis strain CS_006_W139 NODE_64_length_82425_cov_2.000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 42940 32 100.0 35 ................................ TTATGAAGGAACAGCAGACAGCGGAAGGCATAATG 43007 32 100.0 34 ................................ GTGCTATCAATAACGATACTGGCGAAACAACATA 43073 32 100.0 34 ................................ TTTAGTTTTTGGGTTTATAATTTCGCTTTCTTTA 43139 32 100.0 33 ................................ TCTAGCCTCTGATGGTAAAGCCATTATTGAAAG 43204 32 100.0 34 ................................ GGGCATTTCTTTGGTTGCCGGAACAAAAAATGCC 43270 32 100.0 34 ................................ AGCATTGCGTCAGTAGAAGGGAGATTCCCAGTGA 43336 32 100.0 33 ................................ GCTTTCTACGGCCCACAAAATCGGCAGGATTTG 43401 32 100.0 34 ................................ CCCAGAAAAAGGTCTATGCTGGCTATGGAAGGGT 43467 32 100.0 35 ................................ TCCGCGTGCCTTGGTGAGTACTGCGCGAGCTTCTG 43534 32 100.0 36 ................................ TGGAGTTGCAATGGGACCAGGTTGATTTTGAACGTA 43602 32 100.0 33 ................................ GTTGTCGATGCATCCGAGTGCGATATTAACTGC 43667 31 81.2 0 ......T...A......-C.....G......T | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.4 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : GCCAGATTCTGGTGGCCACCCGTGGGCGCGAACAGACACGCCAAAGCCTGCGCGTGGCGGCGGATGTCTGGTGGGTGGAAAGCCACTGGGTTATTCTGGAAATGGTAAAACACAATATAGGCTGGGCATTTGTCTCAGACCATGTGCTGGCGGCCTCTCCCACAGCGCCGGATATTGTGGCCCCCAACCTCCAGTTCGATGCCGGAGAACGCCTGACCCCTCTTGTCACCGTGTGGCACAAGAAGCATCCTCATGGTCCTGCCGCCCAATGGCTCCGCAACCGCCTGCGCCAAGGCGGTATTCCCGGTGTTACGCATCCGTCGCGCGAACCCTGATCACCCATCAAAATCCCGGCAGGGTCGCGCACGCGTCAACTCATTATAAAATAAGAATTTTTTCAAACACGCTGATCCCAAAGCGTTCAGCAGCAGCACTCGTAACCGCCAGTTCGCGCAAAAAGCGCATTCCGCCCAGCCCCAGACAGGTGCTAAACTTACAGC # Right flank : TATGGGGGGAGAGCACGAATTGGTCATGTTCTCTGGCGGGCCACATGCAGGCGCGTTGGCGTAAGCCGGGAGGAGAGAACTAAAGCTCTTACGGGCTTCAGGGCATCTATGCGCAAATTGGAGGTAAGGATTGCTTAATAAGCAATGGTGACAGGTCATTCTGAATGATTACATTTTATTAAGAATAAGTGATACCTGAGGGGAAGGGAGGTCAGTGGTTCTTTACGCGCACTCTCTCCCTGCCCCTGCAGACAAGGCGCGATGGGAACCTTTGCGAGAGCATCTTGAGTGTGTCGCGCAAAGAGGGGCGCTTTTTGCACAGCCATTCGGACTGGCCATGCTCGCGCGGGCTGCGGGGCTTTTGCATGATATTGGTAAAGCATCTGCGGCGTATCAGGCTTATATCAGTTCAGAAGTCAGCCAGAAGGGACCAGATCACAGCACGGCGGGGGCACGTGAGGCTGTAACGTTATATGGCCAGCAACTGGGGCGTTTACTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //