Array 1 534427-535919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYT010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S92 NODE_1_length_714505_cov_326.054879, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 534427 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 534488 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 534549 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 534610 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 534671 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 534732 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 534793 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 534854 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 534915 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 534976 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 535037 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 535098 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 535159 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 535220 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 535281 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 535342 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 535404 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 535465 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 535526 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 535587 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 535648 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 535709 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 535770 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 535831 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 535892 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 552051-553954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYT010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S92 NODE_1_length_714505_cov_326.054879, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 552051 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 552112 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 552173 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 552234 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 552295 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 552356 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 552417 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 552479 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 552540 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 552601 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 552662 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 552723 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 552784 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 552845 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 552906 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 552967 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 553028 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 553089 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 553150 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 553211 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 553273 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 553376 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 553437 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 553498 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 553559 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 553620 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 553681 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 553742 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 553803 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 553864 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 553925 29 96.6 0 A............................ | A [553951] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //