Array 1 149473-152156 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEHT01000017.1 Roseinatronobacter thiooxidans strain ALG1 ALG1_1_(paired)_trimmed_(paired)_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 149473 32 100.0 34 ................................ CTTCGCAAACTCGCCCCACGCCTTTTTCGCTCCG 149539 32 100.0 34 ................................ GCTTGTCTCTGCGCTTCTGTGCGGCTGTGCGGGC 149605 32 100.0 34 ................................ ATGCGCTGCCTGCAATATCCGGCCATCGTAAAAC 149671 32 100.0 34 ................................ CCACAAAATCTGGTGCAGCATGAAGAATTCCCCG 149737 32 100.0 35 ................................ ACCAGCACCAGCGCCCGCGCGCATTTGGAGCAGGC 149804 32 100.0 33 ................................ ACCTCATCTAGGCCATCATCAAGGGGCGCATTG 149869 32 100.0 35 ................................ TAGGCCAAGTCCGCAGCGGCGAAAACATGACCGAC 149936 32 100.0 34 ................................ CATATCATCTCTCCCGTCTCTGGGTGGAAGAGAA 150002 32 100.0 35 ................................ GCCCGCTCGACCAGCACCACCGAAGCCATATTGCC 150069 32 100.0 34 ................................ ATGACTATCTGCGCAATCAGGGCAACACTGGCGC 150135 32 100.0 35 ................................ ATGCGCTTATCCCCAAAGGCAGGCAAAACACCGTT 150202 32 100.0 32 ................................ AAGAGGCGCGCCAGACCTTGCGGTTGCCTCGC 150266 32 100.0 34 ................................ AAAGCCGAAATCAGCGGGGCCGGTTGCTGTCTGT 150332 32 100.0 35 ................................ GCAGATCAACGCGGGCGCTTGGGTCTGTCTGCATA 150399 32 100.0 37 ................................ TTCGGCCCGGCGCAAAATCGTGCTGACCGCCTGCCAG 150468 32 100.0 35 ................................ ATAGGCAGTGCGCCAATGCCGCGCATTTCGACCTT 150535 32 100.0 34 ................................ GTGATTGTCCAGTCCACAACACCCACCGGATCAG 150601 32 100.0 34 ................................ TTTTGTGTGTTGCTGCTGTGTTGGTCGCGTGTTG 150667 32 100.0 34 ................................ AGAATGACTATCGGTATTACCGATCCCCAATCAG 150733 32 100.0 34 ................................ CGCGCCATTGGCCTAAAGCTTCCCCGCTGCGGGC 150799 32 100.0 35 ................................ AAACAGCACATTGACGGCGGATGTTGATGTTCTGC 150866 32 100.0 34 ................................ ATGACGCAATCTGTGGCGCGTGCGCCGGACGGTG 150932 32 100.0 35 ................................ ATGATGAGACGAGATCGATCTTTCGAGGTTCACTT 150999 32 100.0 34 ................................ CTCAGGGAGGATGCGCGGTTATGCCCCCGCGCGT 151065 32 100.0 34 ................................ TGCTTATCTGTCCAGGGCGCGCCCGAAAGGACCG 151131 32 100.0 35 ................................ ATGACCAGATAGCGACAAGGATTTAACCAATGGCT 151198 32 100.0 35 ................................ CCCAGCCTTCTCAAGCAAGCGCAATTCACCCCAGC 151265 32 100.0 34 ................................ AAGTCATTTTCGGACATGCGCCGCGCAAGAGCGG 151331 32 100.0 34 ................................ AACACCTGCATAGAACCCGGCTGGCACGGCTGGC 151397 32 100.0 34 ................................ ATGCAAGCCATTGTTGTTTGGCAAGGCTGTCTGT 151463 32 100.0 34 ................................ ATTTTAATCTCCAATCAATAAGGGTTGTGCGCCA 151529 32 100.0 35 ................................ GTATGCCCGCCCATCCCGAATGCAGATCACTGGAC 151596 32 100.0 35 ................................ CTGCATAGACGACAGGGCGCGGCAAATTTCATCGA 151663 32 100.0 35 ................................ GGCGGGCGCAATGCTTGGCAGCGTTTGGCGGATCG 151730 32 100.0 33 ................................ TGGCGCGCTTGGTCTGACGATCTTGGCGCAGAC 151795 32 100.0 34 ................................ AACTCCGTCACGCGGGGCCGGATTGCCAGAATGG 151861 32 96.9 35 ...........T.................... TATCGCCCATGTGATAGCCGTGTGCTTGAGCGTGT 151928 32 96.9 33 ...........T.................... CGCTGATGGCAACTGACGTAATCGCCTTCCCGC 151993 32 96.9 34 ...........T.................... TGTGCAGCGCGGTCTTGCCCACATCGAGCAAGCC 152059 32 96.9 35 ...........T.................... TGCCCGTCAAATAAATGATGTCGCTTGGATTGCCC 152126 31 84.4 0 ....T......GG.-.........C....... | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 99.3 34 GTCGCCCCCCACACGGGGGCGTGGATTGAAAC # Left flank : AATGCTGGTTCTGATCACTTATGATGTCAAAACCGATACCGCCGCTGGGCGTCGCCGGTTGCGTCGGATAGCCCAAGCCTGTCTCGATTTCGGGCAGCGCGTGCAGTATTCGGTCTTCGAATGCGATGTCGACCCCGCAACCTTTACAGCATTGCGCGCGCGGCTGCTGTCAGAATATAACGAGAAGGAAGACAGCCTCAGATTTTACCACCTTGGATCAAACTGGAAGCGACGTGTAGAGCATCACGGTGCAAACCCCGCCACAGATTTCGACGGTGTCCTTATTATCTAACCGGTTTCGACGCAGGCCGGAAGCGGGTCCCGCGCACCCCAAGCGGACACCAAAACCCCGGTAGGTTCGCATTTCGCCCTGCTCTTTGAAATTGTTCATAATTTTTTCATACCGTTTGCCACATTGGGCACGCGATGACTTGGCTTTGACAGATGTTCGCAAAGAAACAGGGTTTTGCTCAATGAAAGCATTCTGTTAAGCCATAAGG # Right flank : CACGCGTGTCGGTGGCAATTTTTATCGCCCTGACAGCCTCCGCCCGACAAGCGCGCGTGAGCTTTTCTTCAACACGAATGCTGTAAAAGATGTGACTGAGAGGGTTTGTATCCTGTAGTGGGCTTGTTAACGTACCATCAAAAAGTCAATTTCCTTTGCCAGAACCGGACCAACGCCAAGCCTGATAGTTGTGAGTGCGAAAGCGTGTGGGGGCATTATTGGGGGCATGATGAACTTTATATCTTAAATTTAATATGATTAACAGTACGTTGGTTTTTGAAGTTGAGTCCCTTCAGCGCACCAGTTTAAGCTGAAACTGGATTGACACGGCATTTCCCTGATCTGTCTGATAAGATCGGGCTGAGGTTTTGGGCATGCCGTCTGCTAGGTCATTCTGACATAGATTTTTGCTAGGCTTTGGCGCAGTCTGGGGTAGACTGGGGCAATGCGCTGGTCTTTTGCATGGTACATCAGGGGTGTGTATTGGTGTCGGTTCAGCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //